Wall clock time and date at job start Tue Mar 31 2020 17:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99697 * 2 1 4 4 O 1.20829 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99936 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.69994 * 359.62367 * 5 3 2 7 7 C 1.52756 * 109.51044 * 239.50563 * 5 3 2 8 8 C 1.53046 * 109.38100 * 185.70840 * 7 5 3 9 9 H 1.09003 * 109.45566 * 301.21573 * 8 7 5 10 10 C 1.52995 * 109.44677 * 181.25036 * 8 7 5 11 11 C 1.53044 * 109.54062 * 61.23503 * 8 7 5 12 12 C 1.53188 * 109.31219 * 298.63825 * 11 8 7 13 13 N 1.46924 * 108.77853 * 54.63319 * 12 11 8 14 14 C 1.34778 * 120.63249 * 126.36966 * 13 12 11 15 15 O 1.21590 * 120.00266 * 188.66018 * 14 13 12 16 16 C 1.47640 * 119.99911 * 8.65966 * 14 13 12 17 17 C 1.40014 * 119.89524 * 196.82823 * 16 14 13 18 18 C 1.36315 * 120.10531 * 179.97438 * 17 16 14 19 19 C 1.40892 * 119.89400 * 0.02562 * 18 17 16 20 20 C 1.41108 * 120.10030 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00226 * 330.67156 * 20 19 18 22 22 C 1.40232 * 119.99528 * 150.67648 * 20 19 18 23 23 N 1.30638 * 120.00134 * 349.57699 * 22 20 19 24 24 Si 1.86796 * 119.99837 * 169.57305 * 22 20 19 25 25 H 1.48501 * 109.47579 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47566 * 300.00148 * 24 22 20 27 27 H 1.48502 * 109.47076 * 59.99748 * 24 22 20 28 28 C 1.40886 * 119.78981 * 0.27408 * 19 18 17 29 29 C 1.36314 * 119.89299 * 359.39852 * 28 19 18 30 30 H 1.09002 * 109.47156 * 60.00148 * 1 2 3 31 31 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47792 * 300.00339 * 1 2 3 33 33 H 1.08995 * 109.56991 * 65.66659 * 7 5 3 34 34 H 1.08999 * 109.38624 * 305.63006 * 7 5 3 35 35 H 1.08998 * 109.47601 * 299.93625 * 10 8 7 36 36 H 1.09004 * 109.47456 * 59.93829 * 10 8 7 37 37 H 1.09003 * 109.47187 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.49371 * 178.68301 * 11 8 7 39 39 H 1.08996 * 109.49285 * 58.58543 * 11 8 7 40 40 H 1.09006 * 109.58827 * 294.84764 * 12 11 8 41 41 H 1.08994 * 109.70316 * 174.49408 * 12 11 8 42 42 H 1.07999 * 119.94533 * 0.02562 * 17 16 14 43 43 H 1.07999 * 120.05322 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00497 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.05189 * 179.71861 * 28 19 18 46 46 H 1.08000 * 119.94633 * 180.34335 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9870 0.2694 0.0077 7 6 4.0370 2.0316 1.2413 8 6 5.5522 2.2344 1.1681 9 1 6.0456 1.2647 1.1020 10 6 6.0297 2.9647 2.4248 11 6 5.8980 3.0677 -0.0682 12 6 5.4492 2.3178 -1.3263 13 7 4.0224 1.9912 -1.1985 14 6 3.1477 2.3467 -2.1603 15 8 1.9533 2.2136 -1.9753 16 6 3.6397 2.8977 -3.4386 17 6 2.7626 3.5862 -4.2854 18 6 3.2125 4.0972 -5.4664 19 6 4.5623 3.9312 -5.8346 20 6 5.0327 4.4589 -7.0558 21 1 4.3617 4.5557 -7.8964 22 6 6.3717 4.8574 -7.1779 23 7 7.1299 4.9336 -6.1167 24 14 7.0711 5.2792 -8.8578 25 1 8.4972 5.6685 -8.7168 26 1 6.9663 4.0960 -9.7490 27 1 6.3056 6.4091 -9.4432 28 6 5.4395 3.2322 -4.9820 29 6 4.9820 2.7305 -3.8000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.7894 1.4581 2.1345 34 1 3.5418 3.0017 1.2831 35 1 5.5368 3.9346 2.4909 36 1 5.7836 2.3714 3.3055 37 1 7.1089 3.1090 2.3733 38 1 6.9749 3.2314 -0.1069 39 1 5.3851 4.0280 -0.0147 40 1 6.0265 1.3990 -1.4296 41 1 5.6030 2.9465 -2.2033 42 1 1.7283 3.7133 -4.0021 43 1 2.5353 4.6285 -6.1187 44 1 8.0559 5.2096 -6.2011 45 1 6.4739 3.0985 -5.2622 46 1 5.6551 2.1994 -3.1433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274744391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:23 Heat of formation + Delta-G solvation = -78.826572 kcal Electronic energy + Delta-G solvation = -29341.620876 eV Core-core repulsion = 25389.912266 eV Total energy + Delta-G solvation = -3951.708610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.30266 -40.64981 -39.20673 -38.53343 -37.26308 -35.74665 -35.02296 -33.30069 -31.58715 -31.31328 -29.51145 -28.67056 -27.63231 -25.40006 -24.92708 -23.74639 -22.66338 -21.98146 -21.39760 -20.23318 -19.35409 -18.79420 -18.02882 -17.56442 -17.34675 -16.94745 -16.80053 -16.18839 -16.13168 -15.49019 -15.28094 -15.10088 -14.92462 -14.69291 -14.45583 -14.36527 -14.25656 -13.92854 -13.60745 -13.40627 -13.15317 -13.02595 -12.82671 -12.80882 -12.71702 -12.60711 -12.40857 -12.34277 -12.05800 -11.81575 -11.74962 -11.64800 -11.49886 -11.20401 -11.14574 -10.80723 -10.28397 -9.74403 -9.48881 -9.33508 -8.71818 -6.49241 0.40572 1.09994 1.17165 1.40994 1.44866 1.52526 1.72526 2.02729 2.18067 2.23120 2.78113 3.57563 3.62136 3.74215 3.79107 3.94907 4.05405 4.07349 4.15236 4.27681 4.34005 4.34088 4.38763 4.41926 4.63159 4.65282 4.69158 4.72334 4.86591 4.93065 4.94391 4.99624 5.03840 5.11304 5.14373 5.19423 5.29037 5.38872 5.42997 5.52131 5.56941 5.60059 5.77330 5.92203 5.98705 6.22925 6.39643 6.54457 6.78784 6.87927 6.89751 7.33431 8.22360 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.003459 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.969560 B = 8092.769076 C = 9529.872487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.369 6.369 3 C 0.465 3.535 4 O -0.513 6.513 5 C 0.155 3.845 6 H 0.128 0.872 7 C -0.112 4.112 8 C -0.082 4.082 9 H 0.102 0.898 10 C -0.142 4.142 11 C -0.130 4.130 12 C 0.061 3.939 13 N -0.603 5.603 14 C 0.559 3.441 15 O -0.578 6.578 16 C -0.283 4.283 17 C -0.039 4.039 18 C -0.249 4.249 19 C 0.103 3.897 20 C -0.479 4.479 21 H 0.080 0.920 22 C 0.039 3.961 23 N -0.803 5.803 24 Si 0.987 3.013 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.264 1.264 28 C -0.185 4.185 29 C -0.086 4.086 30 H 0.037 0.963 31 H 0.135 0.865 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.296 0.704 45 H 0.121 0.879 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 -8.240 13.482 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.286 6.286 3 C 0.308 3.692 4 O -0.400 6.400 5 C 0.051 3.949 6 H 0.146 0.854 7 C -0.151 4.151 8 C -0.100 4.100 9 H 0.120 0.880 10 C -0.199 4.199 11 C -0.168 4.168 12 C -0.058 4.058 13 N -0.338 5.338 14 C 0.355 3.645 15 O -0.462 6.462 16 C -0.287 4.287 17 C -0.058 4.058 18 C -0.269 4.269 19 C 0.099 3.901 20 C -0.507 4.507 21 H 0.098 0.902 22 C -0.179 4.179 23 N -0.427 5.427 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.183 1.183 27 H -0.188 1.188 28 C -0.204 4.204 29 C -0.104 4.104 30 H 0.056 0.944 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.678 -7.946 13.693 16.253 hybrid contribution -0.702 0.805 -0.981 1.450 sum 2.976 -7.141 12.712 14.881 Atomic orbital electron populations 1.23348 0.75424 1.05107 1.01541 1.86394 1.24578 1.33009 1.84624 1.23441 0.92209 0.81523 0.72053 1.90630 1.67588 1.37466 1.44309 1.20871 0.86496 0.99459 0.88081 0.85437 1.21906 0.98130 1.00086 0.94942 1.21123 0.92677 1.00877 0.95313 0.88025 1.21781 1.01830 0.99861 0.96447 1.22062 1.02803 0.98275 0.93624 1.23349 0.78268 1.02479 1.01739 1.47838 1.09604 1.58717 1.17677 1.18751 0.85269 0.76395 0.84108 1.90785 1.17390 1.57364 1.80644 1.19106 0.95912 1.16244 0.97438 1.20432 0.97154 0.94603 0.93608 1.20870 0.97464 1.09938 0.98595 1.18164 0.91375 0.87451 0.93060 1.20041 0.96222 1.36254 0.98212 0.90154 1.26821 0.96219 0.92473 1.02425 1.69699 1.08820 1.32137 1.32085 0.85158 0.77826 0.79613 0.76639 1.18581 1.18302 1.18801 1.21139 1.00540 1.02542 0.96227 1.21886 0.93654 0.98487 0.96348 0.94387 0.84695 0.91802 0.87906 0.93239 0.93915 0.91274 0.90960 0.87786 0.93717 0.87905 0.85871 0.89119 0.88207 0.89236 0.86139 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.56 113.37 1.20 2.23 16 2 O -0.37 -11.72 10.56 -51.42 -0.54 -12.27 16 3 C 0.47 16.76 4.87 71.24 0.35 17.11 16 4 O -0.51 -22.82 13.71 30.02 0.41 -22.41 16 5 C 0.15 4.40 3.32 44.08 0.15 4.55 16 6 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 7 C -0.11 -2.52 4.58 30.53 0.14 -2.38 16 8 C -0.08 -1.38 2.68 -10.77 -0.03 -1.41 16 9 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 10 C -0.14 -1.99 9.19 71.98 0.66 -1.32 16 11 C -0.13 -2.76 5.36 30.67 0.16 -2.60 16 12 C 0.06 1.61 4.66 86.36 0.40 2.01 16 13 N -0.60 -20.34 2.98 -803.59 -2.39 -22.73 16 14 C 0.56 24.91 7.42 86.73 0.64 25.56 16 15 O -0.58 -29.40 11.61 20.39 0.24 -29.16 16 16 C -0.28 -13.27 5.73 -19.93 -0.11 -13.38 16 17 C -0.04 -1.95 9.52 22.25 0.21 -1.74 16 18 C -0.25 -12.75 9.73 22.47 0.22 -12.53 16 19 C 0.10 5.35 5.54 -21.28 -0.12 5.23 16 20 C -0.48 -24.34 9.05 23.46 0.21 -24.13 16 21 H 0.08 3.95 7.87 -2.91 -0.02 3.93 16 22 C 0.04 1.78 5.25 85.36 0.45 2.23 16 23 N -0.80 -37.48 10.86 21.87 0.24 -37.24 16 24 Si 0.99 34.78 29.57 68.60 2.03 36.81 16 25 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 26 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 27 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 28 C -0.19 -8.93 8.59 22.47 0.19 -8.74 16 29 C -0.09 -3.69 7.61 22.25 0.17 -3.52 16 30 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.42 7.94 -2.39 -0.02 1.40 16 35 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 2.03 8.01 -2.38 -0.02 2.01 16 41 H 0.12 3.92 3.52 -15.65 -0.06 3.86 16 42 H 0.09 4.60 7.73 -2.91 -0.02 4.58 16 43 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.30 12.29 8.29 -92.71 -0.77 11.52 16 45 H 0.12 5.80 6.26 -2.91 -0.02 5.79 16 46 H 0.17 5.73 4.17 -2.91 -0.01 5.72 16 Total: -1.00 -70.72 365.70 5.82 -64.90 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.95 Total: 34.93 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.90 Total: -12.83 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -2.16 Total: -59.97 kcal Atomic # 8 Polarization: -63.94 SS G_CDS: 0.11 Total: -63.84 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -70.72 5.82 -64.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274744391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.922 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds