Wall clock time and date at job start Tue Mar 31 2020 17:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00406 * 2 1 4 4 O 1.20836 * 119.99681 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00414 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.58856 * 66.47696 * 5 3 2 7 7 C 1.53192 * 109.70431 * 186.82999 * 5 3 2 8 8 C 1.53041 * 109.31135 * 174.48831 * 7 5 3 9 9 H 1.09004 * 109.45124 * 58.65348 * 8 7 5 10 10 C 1.53006 * 109.45933 * 178.61433 * 8 7 5 11 11 C 1.53038 * 109.54079 * 298.63394 * 8 7 5 12 12 C 1.53187 * 109.31236 * 61.36735 * 11 8 7 13 13 N 1.46923 * 109.58509 * 306.18874 * 5 3 2 14 14 C 1.34785 * 120.63207 * 6.44051 * 13 5 3 15 15 O 1.21577 * 119.99836 * 336.53715 * 14 13 5 16 16 C 1.47640 * 119.99752 * 156.53334 * 14 13 5 17 17 C 1.40007 * 119.89799 * 287.85995 * 16 14 13 18 18 C 1.36321 * 120.10412 * 179.72507 * 17 16 14 19 19 C 1.40884 * 119.89306 * 0.52411 * 18 17 16 20 20 C 1.41109 * 120.10612 * 179.76641 * 19 18 17 21 21 H 1.07990 * 120.00259 * 144.41562 * 20 19 18 22 22 C 1.40233 * 119.99719 * 324.41827 * 20 19 18 23 23 N 1.30647 * 120.00094 * 47.99139 * 22 20 19 24 24 Si 1.86798 * 119.99922 * 227.98496 * 22 20 19 25 25 H 1.48500 * 109.47161 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46762 * 120.00280 * 24 22 20 27 27 H 1.48497 * 109.47147 * 240.00204 * 24 22 20 28 28 C 1.40894 * 119.79357 * 359.75103 * 19 18 17 29 29 C 1.36312 * 119.88904 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47371 * 300.00489 * 1 2 3 32 32 H 1.09000 * 109.46844 * 60.00001 * 1 2 3 33 33 H 1.09005 * 109.49702 * 54.54369 * 7 5 3 34 34 H 1.09000 * 109.50248 * 294.44173 * 7 5 3 35 35 H 1.09001 * 109.47338 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.47374 * 60.06911 * 10 8 7 37 37 H 1.09003 * 109.47361 * 300.06942 * 10 8 7 38 38 H 1.09007 * 109.49793 * 181.31495 * 11 8 7 39 39 H 1.09000 * 109.50040 * 301.41383 * 11 8 7 40 40 H 1.09006 * 109.58909 * 65.14740 * 12 11 8 41 41 H 1.09002 * 109.59252 * 185.43578 * 12 11 8 42 42 H 1.07994 * 119.94741 * 359.97438 * 17 16 14 43 43 H 1.08003 * 120.05468 * 180.29420 * 18 17 16 44 44 H 0.96998 * 120.00192 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.05130 * 180.02562 * 28 19 18 46 46 H 1.07998 * 119.94587 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9523 0.8848 -0.9424 7 6 4.0072 2.7318 0.1711 8 6 5.5306 2.7869 0.3072 9 1 5.9903 2.3478 -0.5782 10 6 5.9777 4.2438 0.4442 11 6 5.9623 2.0023 1.5482 12 6 5.5436 0.5370 1.3922 13 7 4.1014 0.4842 1.1162 14 6 3.2847 -0.2749 1.8736 15 8 2.0998 -0.0112 1.9420 16 6 3.8290 -1.4266 2.6199 17 6 4.2211 -2.5815 1.9323 18 6 4.7295 -3.6453 2.6167 19 6 4.8498 -3.5854 4.0191 20 6 5.3708 -4.6857 4.7324 21 1 5.9843 -4.5215 5.6059 22 6 5.0920 -5.9926 4.3070 23 7 5.2393 -6.3158 3.0498 24 14 4.5101 -7.2714 5.5381 25 1 4.4250 -6.6569 6.8873 26 1 3.1706 -7.7711 5.1368 27 1 5.4717 -8.4025 5.5687 28 6 4.4485 -2.4232 4.7071 29 6 3.9466 -1.3624 4.0137 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.5467 3.1482 1.0670 34 1 3.6987 3.3104 -0.6997 35 1 7.0627 4.2833 0.5407 36 1 5.5186 4.6831 1.3298 37 1 5.6704 4.8029 -0.4396 38 1 7.0452 2.0615 1.6576 39 1 5.4833 2.4255 2.4311 40 1 6.0908 0.0868 0.5639 41 1 5.7618 -0.0054 2.3121 42 1 4.1243 -2.6281 0.8577 43 1 5.0361 -4.5339 2.0850 44 1 5.0468 -7.2198 2.7556 45 1 4.5393 -2.3726 5.7821 46 1 3.6391 -0.4710 4.5401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274744399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:32 Heat of formation + Delta-G solvation = -95.098060 kcal Electronic energy + Delta-G solvation = -29330.539477 eV Core-core repulsion = 25378.125282 eV Total energy + Delta-G solvation = -3952.414195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.87348 -39.07310 -37.84263 -36.95442 -35.95838 -33.95960 -33.72566 -31.67327 -30.16677 -29.51958 -28.27906 -27.53196 -25.88546 -24.26920 -23.29249 -22.01156 -20.97143 -20.65319 -20.34387 -18.86092 -17.57854 -17.28290 -16.96709 -16.26585 -15.77016 -15.67601 -15.22524 -14.82111 -14.47522 -14.20718 -14.10183 -13.82927 -13.60788 -13.32223 -12.98023 -12.88791 -12.66022 -12.50766 -12.22168 -12.20303 -12.03517 -11.90674 -11.63403 -11.50311 -11.38517 -11.23686 -11.08554 -10.97378 -10.73189 -10.57988 -10.46279 -10.27994 -10.15170 -10.14089 -9.68435 -9.09741 -8.83628 -8.30836 -7.69020 -7.47461 -7.17105 -4.47437 2.36987 2.49146 2.87159 2.98011 3.00645 3.02075 3.12939 3.30638 3.47820 3.78695 4.22440 4.54347 4.66192 4.70736 4.92478 5.09676 5.16243 5.36707 5.39280 5.40258 5.47204 5.52611 5.56192 5.61321 5.64425 5.73316 5.86080 5.89273 5.94597 6.02974 6.04438 6.09129 6.17424 6.22732 6.34391 6.70261 6.77333 6.80777 6.86746 7.09152 7.22028 7.54595 7.58498 7.85363 7.93200 7.95797 8.07146 8.11460 8.48141 8.67402 8.70257 8.84554 9.74703 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.003408 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.761671 B = 8214.168744 C = 9298.944597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.333 6.333 3 C 0.485 3.515 4 O -0.522 6.522 5 C 0.154 3.846 6 H 0.101 0.899 7 C -0.110 4.110 8 C -0.091 4.091 9 H 0.074 0.926 10 C -0.144 4.144 11 C -0.132 4.132 12 C 0.122 3.878 13 N -0.622 5.622 14 C 0.588 3.412 15 O -0.521 6.521 16 C -0.271 4.271 17 C -0.054 4.054 18 C -0.206 4.206 19 C 0.111 3.889 20 C -0.475 4.475 21 H 0.086 0.914 22 C 0.097 3.903 23 N -0.746 5.746 24 Si 0.900 3.100 25 H -0.254 1.254 26 H -0.268 1.268 27 H -0.273 1.273 28 C -0.227 4.227 29 C -0.049 4.049 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.140 0.860 44 H 0.285 0.715 45 H 0.096 0.904 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 10.503 -6.831 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.248 6.248 3 C 0.329 3.671 4 O -0.411 6.411 5 C 0.049 3.951 6 H 0.119 0.881 7 C -0.148 4.148 8 C -0.110 4.110 9 H 0.092 0.908 10 C -0.202 4.202 11 C -0.171 4.171 12 C -0.001 4.001 13 N -0.361 5.361 14 C 0.381 3.619 15 O -0.397 6.397 16 C -0.275 4.275 17 C -0.073 4.073 18 C -0.225 4.225 19 C 0.109 3.891 20 C -0.501 4.501 21 H 0.104 0.896 22 C -0.129 4.129 23 N -0.366 5.366 24 Si 0.722 3.278 25 H -0.177 1.177 26 H -0.193 1.193 27 H -0.198 1.198 28 C -0.246 4.246 29 C -0.068 4.068 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.157 0.843 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.883 10.730 -6.982 12.832 hybrid contribution -0.538 -0.596 0.366 0.882 sum 0.344 10.134 -6.616 12.108 Atomic orbital electron populations 1.22994 0.77100 1.02895 1.01275 1.86609 1.22874 1.32419 1.82883 1.22885 0.91024 0.81936 0.71250 1.90603 1.66748 1.36587 1.47191 1.20861 0.87461 0.94114 0.92663 0.88139 1.21853 0.95750 0.93319 1.03917 1.21131 0.94637 0.96380 0.98811 0.90759 1.21797 1.01083 0.95424 1.01865 1.22052 1.01386 0.95447 0.98171 1.21604 0.79190 0.96155 1.03111 1.48162 1.08890 1.47125 1.31875 1.18945 0.84945 0.81066 0.76920 1.90640 1.17543 1.70351 1.61150 1.18683 1.20080 0.95191 0.93508 1.20343 0.96595 0.93185 0.97165 1.21730 1.06900 0.99236 0.94591 1.17675 0.88860 0.90921 0.91678 1.19479 1.29597 0.89622 1.11448 0.89607 1.26145 0.91708 0.99695 0.95340 1.69894 1.27748 1.20867 1.18137 0.86412 0.79467 0.79270 0.82603 1.17699 1.19309 1.19805 1.20649 1.09944 0.96159 0.97855 1.20151 0.97537 0.97097 0.91979 0.88909 0.92070 0.93226 0.90561 0.90297 0.92435 0.92622 0.92661 0.90427 0.91396 0.91686 0.88201 0.89373 0.84266 0.90380 0.88552 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.21 101.05 1.03 1.82 16 2 O -0.33 -6.17 7.38 -47.70 -0.35 -6.52 16 3 C 0.49 8.62 5.68 36.00 0.20 8.83 16 4 O -0.52 -9.99 15.77 -18.76 -0.30 -10.29 16 5 C 0.15 2.25 3.40 -68.75 -0.23 2.01 16 6 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.11 -1.35 3.97 -26.61 -0.11 -1.46 16 8 C -0.09 -0.89 2.68 -90.58 -0.24 -1.14 16 9 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 10 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 11 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 12 C 0.12 1.64 6.20 -3.71 -0.02 1.62 16 13 N -0.62 -10.12 2.97 -167.71 -0.50 -10.61 16 14 C 0.59 11.93 6.32 -12.42 -0.08 11.85 16 15 O -0.52 -11.77 12.29 -20.20 -0.25 -12.02 16 16 C -0.27 -5.89 3.97 -104.73 -0.42 -6.30 16 17 C -0.05 -1.21 9.71 -39.61 -0.38 -1.59 16 18 C -0.21 -5.02 9.21 -39.27 -0.36 -5.38 16 19 C 0.11 2.78 5.62 -106.80 -0.60 2.18 16 20 C -0.48 -11.77 8.84 -37.74 -0.33 -12.11 16 21 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 22 C 0.10 2.26 5.18 -17.31 -0.09 2.17 16 23 N -0.75 -17.47 11.07 55.56 0.62 -16.86 16 24 Si 0.90 17.41 29.69 -169.99 -5.05 12.36 16 25 H -0.25 -4.94 7.11 56.52 0.40 -4.54 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 27 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 28 C -0.23 -5.27 9.73 -39.27 -0.38 -5.65 16 29 C -0.05 -1.07 9.68 -39.61 -0.38 -1.45 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 32 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.53 6.77 -51.93 -0.35 1.18 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.14 3.52 5.59 -52.48 -0.29 3.23 16 44 H 0.28 5.96 8.29 -40.82 -0.34 5.62 16 45 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 46 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -28.96 374.07 -9.35 -38.30 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.96 Total: 7.04 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.20 Total: -7.04 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.12 Total: -27.47 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.90 Total: -28.83 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.05 Total: 12.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.96 -9.35 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274744399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.793 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds