Wall clock time and date at job start Tue Mar 31 2020 17:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00406 * 2 1 4 4 O 1.20836 * 119.99681 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00414 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.58856 * 66.47696 * 5 3 2 7 7 C 1.53192 * 109.70431 * 186.82999 * 5 3 2 8 8 C 1.53041 * 109.31135 * 174.48831 * 7 5 3 9 9 H 1.09004 * 109.45124 * 58.65348 * 8 7 5 10 10 C 1.53006 * 109.45933 * 178.61433 * 8 7 5 11 11 C 1.53038 * 109.54079 * 298.63394 * 8 7 5 12 12 C 1.53187 * 109.31236 * 61.36735 * 11 8 7 13 13 N 1.46923 * 109.58509 * 306.18874 * 5 3 2 14 14 C 1.34785 * 120.63207 * 6.44051 * 13 5 3 15 15 O 1.21577 * 119.99836 * 336.53715 * 14 13 5 16 16 C 1.47640 * 119.99752 * 156.53334 * 14 13 5 17 17 C 1.40007 * 119.89799 * 287.85995 * 16 14 13 18 18 C 1.36321 * 120.10412 * 179.72507 * 17 16 14 19 19 C 1.40884 * 119.89306 * 0.52411 * 18 17 16 20 20 C 1.41109 * 120.10612 * 179.76641 * 19 18 17 21 21 H 1.07990 * 120.00259 * 144.41562 * 20 19 18 22 22 C 1.40233 * 119.99719 * 324.41827 * 20 19 18 23 23 N 1.30647 * 120.00094 * 47.99139 * 22 20 19 24 24 Si 1.86798 * 119.99922 * 227.98496 * 22 20 19 25 25 H 1.48500 * 109.47161 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46762 * 120.00280 * 24 22 20 27 27 H 1.48497 * 109.47147 * 240.00204 * 24 22 20 28 28 C 1.40894 * 119.79357 * 359.75103 * 19 18 17 29 29 C 1.36312 * 119.88904 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47371 * 300.00489 * 1 2 3 32 32 H 1.09000 * 109.46844 * 60.00001 * 1 2 3 33 33 H 1.09005 * 109.49702 * 54.54369 * 7 5 3 34 34 H 1.09000 * 109.50248 * 294.44173 * 7 5 3 35 35 H 1.09001 * 109.47338 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.47374 * 60.06911 * 10 8 7 37 37 H 1.09003 * 109.47361 * 300.06942 * 10 8 7 38 38 H 1.09007 * 109.49793 * 181.31495 * 11 8 7 39 39 H 1.09000 * 109.50040 * 301.41383 * 11 8 7 40 40 H 1.09006 * 109.58909 * 65.14740 * 12 11 8 41 41 H 1.09002 * 109.59252 * 185.43578 * 12 11 8 42 42 H 1.07994 * 119.94741 * 359.97438 * 17 16 14 43 43 H 1.08003 * 120.05468 * 180.29420 * 18 17 16 44 44 H 0.96998 * 120.00192 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.05130 * 180.02562 * 28 19 18 46 46 H 1.07998 * 119.94587 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9523 0.8848 -0.9424 7 6 4.0072 2.7318 0.1711 8 6 5.5306 2.7869 0.3072 9 1 5.9903 2.3478 -0.5782 10 6 5.9777 4.2438 0.4442 11 6 5.9623 2.0023 1.5482 12 6 5.5436 0.5370 1.3922 13 7 4.1014 0.4842 1.1162 14 6 3.2847 -0.2749 1.8736 15 8 2.0998 -0.0112 1.9420 16 6 3.8290 -1.4266 2.6199 17 6 4.2211 -2.5815 1.9323 18 6 4.7295 -3.6453 2.6167 19 6 4.8498 -3.5854 4.0191 20 6 5.3708 -4.6857 4.7324 21 1 5.9843 -4.5215 5.6059 22 6 5.0920 -5.9926 4.3070 23 7 5.2393 -6.3158 3.0498 24 14 4.5101 -7.2714 5.5381 25 1 4.4250 -6.6569 6.8873 26 1 3.1706 -7.7711 5.1368 27 1 5.4717 -8.4025 5.5687 28 6 4.4485 -2.4232 4.7071 29 6 3.9466 -1.3624 4.0137 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.5467 3.1482 1.0670 34 1 3.6987 3.3104 -0.6997 35 1 7.0627 4.2833 0.5407 36 1 5.5186 4.6831 1.3298 37 1 5.6704 4.8029 -0.4396 38 1 7.0452 2.0615 1.6576 39 1 5.4833 2.4255 2.4311 40 1 6.0908 0.0868 0.5639 41 1 5.7618 -0.0054 2.3121 42 1 4.1243 -2.6281 0.8577 43 1 5.0361 -4.5339 2.0850 44 1 5.0468 -7.2198 2.7556 45 1 4.5393 -2.3726 5.7821 46 1 3.6391 -0.4710 4.5401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274744399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:31 Heat of formation + Delta-G solvation = -108.010437 kcal Electronic energy + Delta-G solvation = -29331.099399 eV Core-core repulsion = 25378.125282 eV Total energy + Delta-G solvation = -3952.974118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21533 -40.52309 -39.23466 -38.55020 -37.32451 -35.69811 -34.90672 -32.88855 -31.82967 -31.32515 -29.36531 -28.73246 -27.54503 -25.43642 -24.39404 -23.54231 -22.78047 -22.07174 -21.40670 -20.21034 -19.39756 -18.64721 -18.36224 -17.61412 -17.34662 -16.95438 -16.80809 -16.12601 -15.89544 -15.43180 -15.33999 -15.09585 -14.97226 -14.58094 -14.48463 -14.14052 -14.10046 -13.94928 -13.90343 -13.77338 -13.25897 -13.06576 -12.85531 -12.82220 -12.66636 -12.63545 -12.38924 -12.26242 -12.06273 -11.91782 -11.66833 -11.54810 -11.46234 -11.39963 -11.35065 -10.70822 -10.60323 -9.61618 -9.51413 -9.30109 -8.92001 -6.32528 0.75315 1.05018 1.15702 1.32896 1.44181 1.55244 1.65953 1.85807 2.14029 2.16690 2.48075 3.41580 3.54449 3.75353 3.77806 3.95003 4.08360 4.09538 4.12190 4.23835 4.33947 4.40010 4.44570 4.45625 4.63525 4.66243 4.70905 4.74656 4.88974 4.98121 5.00152 5.05549 5.09091 5.11084 5.18535 5.26774 5.38387 5.39777 5.45812 5.51661 5.56663 5.71972 5.84408 6.08476 6.12204 6.28921 6.36011 6.63602 6.72099 6.83455 6.99981 7.16560 8.03719 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.003408 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.761671 B = 8214.168744 C = 9298.944597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.351 6.351 3 C 0.477 3.523 4 O -0.543 6.543 5 C 0.150 3.850 6 H 0.134 0.866 7 C -0.103 4.103 8 C -0.084 4.084 9 H 0.097 0.903 10 C -0.141 4.141 11 C -0.126 4.126 12 C 0.116 3.884 13 N -0.614 5.614 14 C 0.586 3.414 15 O -0.552 6.552 16 C -0.266 4.266 17 C -0.050 4.050 18 C -0.226 4.226 19 C 0.087 3.913 20 C -0.508 4.508 21 H 0.082 0.918 22 C 0.062 3.938 23 N -0.769 5.769 24 Si 0.970 3.030 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.257 1.257 28 C -0.237 4.237 29 C -0.051 4.051 30 H 0.110 0.890 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.296 0.704 45 H 0.104 0.896 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 10.997 -7.858 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.266 6.266 3 C 0.322 3.678 4 O -0.434 6.434 5 C 0.047 3.953 6 H 0.151 0.849 7 C -0.142 4.142 8 C -0.102 4.102 9 H 0.115 0.885 10 C -0.198 4.198 11 C -0.164 4.164 12 C -0.005 4.005 13 N -0.352 5.352 14 C 0.378 3.622 15 O -0.430 6.430 16 C -0.270 4.270 17 C -0.069 4.069 18 C -0.245 4.245 19 C 0.085 3.915 20 C -0.534 4.534 21 H 0.100 0.900 22 C -0.163 4.163 23 N -0.390 5.390 24 Si 0.790 3.210 25 H -0.180 1.180 26 H -0.192 1.192 27 H -0.181 1.181 28 C -0.256 4.256 29 C -0.070 4.070 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.145 0.855 44 H 0.108 0.892 45 H 0.122 0.878 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.866 11.240 -8.032 13.940 hybrid contribution -0.841 -0.687 0.614 1.247 sum 1.026 10.553 -7.418 12.940 Atomic orbital electron populations 1.23155 0.76003 1.04163 1.01320 1.86587 1.24264 1.33025 1.82732 1.23532 0.92334 0.81442 0.70459 1.90579 1.67557 1.37075 1.48178 1.21244 0.85487 0.95524 0.93073 0.84887 1.21859 0.97508 0.91497 1.03292 1.21137 0.92607 0.97472 0.99018 0.88522 1.21769 1.01986 0.94170 1.01919 1.22027 1.02803 0.93316 0.98215 1.21826 0.77567 0.98149 1.02927 1.48093 1.09689 1.46008 1.31382 1.18684 0.84785 0.81277 0.77458 1.90635 1.18719 1.71154 1.62517 1.18872 1.18658 0.95783 0.93641 1.20425 0.95905 0.92786 0.97767 1.21679 1.08584 0.99579 0.94649 1.17952 0.89721 0.91689 0.92154 1.19665 1.31106 0.90793 1.11828 0.90025 1.26981 0.91211 1.01001 0.97077 1.69863 1.27701 1.22005 1.19418 0.85364 0.79008 0.76939 0.79730 1.18031 1.19196 1.18087 1.20777 1.10310 0.96151 0.98374 1.20324 0.97057 0.97216 0.92405 0.87133 0.93877 0.91274 0.93188 0.88883 0.90883 0.93584 0.91708 0.87814 0.92951 0.89498 0.90404 0.88049 0.85496 0.89194 0.87809 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.44 10.21 113.37 1.16 2.60 16 2 O -0.35 -12.89 7.38 -43.33 -0.32 -13.21 16 3 C 0.48 16.64 5.68 71.23 0.40 17.05 16 4 O -0.54 -20.66 15.77 21.93 0.35 -20.32 16 5 C 0.15 4.12 3.40 44.23 0.15 4.27 16 6 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 7 C -0.10 -2.32 3.97 30.67 0.12 -2.20 16 8 C -0.08 -1.37 2.68 -10.77 -0.03 -1.40 16 9 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 10 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 11 C -0.13 -2.40 5.36 30.67 0.16 -2.23 16 12 C 0.12 2.93 6.20 86.36 0.54 3.46 16 13 N -0.61 -19.22 2.97 -802.78 -2.39 -21.61 16 14 C 0.59 23.63 6.32 86.72 0.55 24.18 16 15 O -0.55 -25.12 12.29 20.43 0.25 -24.87 16 16 C -0.27 -11.59 3.97 -19.93 -0.08 -11.67 16 17 C -0.05 -2.26 9.71 22.25 0.22 -2.04 16 18 C -0.23 -11.27 9.21 22.47 0.21 -11.06 16 19 C 0.09 4.47 5.62 -21.28 -0.12 4.35 16 20 C -0.51 -25.74 8.84 23.46 0.21 -25.54 16 21 H 0.08 4.05 8.06 -2.92 -0.02 4.03 16 22 C 0.06 2.87 5.18 85.35 0.44 3.32 16 23 N -0.77 -36.29 11.07 21.87 0.24 -36.05 16 24 Si 0.97 35.51 29.69 68.60 2.04 37.54 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 26 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 28 C -0.24 -11.22 9.73 22.47 0.22 -11.00 16 29 C -0.05 -2.27 9.68 22.25 0.22 -2.06 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.05 1.40 8.06 -2.38 -0.02 1.38 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.08 2.33 6.77 -2.39 -0.02 2.31 16 42 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.13 6.61 5.59 -2.91 -0.02 6.59 16 44 H 0.30 12.33 8.29 -92.71 -0.77 11.57 16 45 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 46 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -64.22 374.07 6.17 -58.05 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.97 Total: 31.67 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.02 Total: -11.21 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -2.14 Total: -57.66 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: 0.28 Total: -58.39 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.04 Total: 37.54 kcal Total: -64.22 6.17 -58.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274744399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.957 kcal (2) G-P(sol) polarization free energy of solvation -64.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds