Wall clock time and date at job start Tue Mar 31 2020 17:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00263 * 2 1 4 4 O 1.20823 * 119.99655 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00143 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.70007 * 8.98466 * 5 3 2 7 7 C 1.53188 * 109.58845 * 129.34283 * 5 3 2 8 8 C 1.53031 * 109.31507 * 174.42181 * 7 5 3 9 9 H 1.09004 * 109.46225 * 58.65716 * 8 7 5 10 10 C 1.53000 * 109.45999 * 178.62625 * 8 7 5 11 11 C 1.53042 * 109.53755 * 298.63166 * 8 7 5 12 12 C 1.52763 * 109.38234 * 61.24365 * 11 8 7 13 13 N 1.46925 * 109.00441 * 305.58743 * 12 11 8 14 14 C 1.34780 * 120.62889 * 233.58807 * 13 12 11 15 15 O 1.21544 * 120.00075 * 186.74339 * 14 13 12 16 16 C 1.47891 * 120.00049 * 6.73474 * 14 13 12 17 17 C 1.39920 * 120.02325 * 53.65727 * 16 14 13 18 18 C 1.38321 * 120.35558 * 179.97438 * 17 16 14 19 19 C 1.37751 * 120.41511 * 359.97438 * 18 17 16 20 20 C 1.40744 * 120.04028 * 0.02562 * 19 18 17 21 21 C 1.41437 * 120.18239 * 180.27500 * 20 19 18 22 22 H 1.07999 * 120.00517 * 148.61323 * 21 20 19 23 23 C 1.39934 * 119.99564 * 328.61833 * 21 20 19 24 24 N 1.30831 * 120.00155 * 162.09819 * 23 21 20 25 25 Si 1.86798 * 120.00097 * 342.09585 * 23 21 20 26 26 H 1.48505 * 109.47021 * 90.85959 * 25 23 21 27 27 H 1.48504 * 109.47298 * 210.85750 * 25 23 21 28 28 H 1.48494 * 109.47229 * 330.86067 * 25 23 21 29 29 C 1.38992 * 120.02342 * 233.63858 * 16 14 13 30 30 H 1.08998 * 109.47196 * 299.99570 * 1 2 3 31 31 H 1.08997 * 109.46783 * 59.99998 * 1 2 3 32 32 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.49826 * 294.37298 * 7 5 3 34 34 H 1.09003 * 109.49645 * 54.46341 * 7 5 3 35 35 H 1.09001 * 109.47267 * 60.00418 * 10 8 7 36 36 H 1.09002 * 109.47356 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47122 * 299.99668 * 10 8 7 38 38 H 1.09010 * 109.49829 * 181.31503 * 11 8 7 39 39 H 1.08992 * 109.50107 * 301.41337 * 11 8 7 40 40 H 1.08999 * 109.50833 * 185.70776 * 12 11 8 41 41 H 1.08995 * 109.43421 * 65.41893 * 12 11 8 42 42 H 1.08005 * 119.81995 * 359.95472 * 17 16 14 43 43 H 1.08004 * 119.79133 * 179.97438 * 18 17 16 44 44 H 1.08002 * 119.97831 * 180.02562 * 19 18 17 45 45 H 0.97003 * 120.00109 * 179.97438 * 24 23 21 46 46 H 1.08003 * 120.20823 * 359.97438 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9864 0.2818 -0.1593 7 6 4.0318 2.2151 -1.1156 8 6 5.5480 2.4001 -1.0221 9 1 6.0382 1.4302 -1.1073 10 6 6.0212 3.3116 -2.1563 11 6 5.9042 3.0350 0.3241 12 6 5.4592 2.1092 1.4548 13 7 4.0313 1.8045 1.2898 14 6 3.1636 2.0124 2.2999 15 8 2.0101 1.6438 2.1958 16 6 3.6151 2.6889 3.5351 17 6 4.2479 3.9345 3.4599 18 6 4.6725 4.5735 4.6108 19 6 4.4769 3.9918 5.8441 20 6 3.8423 2.7392 5.9396 21 6 3.6348 2.1418 7.2047 22 1 2.7748 1.5095 7.3689 23 6 4.5438 2.3702 8.2438 24 7 4.1971 2.1271 9.4816 25 14 6.2526 3.0221 7.8634 26 1 6.2374 4.5064 7.9083 27 1 7.2147 2.5063 8.8702 28 1 6.6640 2.5721 6.5095 29 6 3.4107 2.0878 4.7716 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.7769 1.7846 -2.0840 34 1 3.5399 3.1816 -1.0058 35 1 5.5309 4.2814 -2.0716 36 1 7.1011 3.4439 -2.0897 37 1 5.7687 2.8592 -3.1153 38 1 6.9820 3.1879 0.3804 39 1 5.3947 3.9937 0.4203 40 1 5.6191 2.6026 2.4135 41 1 6.0367 1.1856 1.4158 42 1 4.4060 4.3994 2.4979 43 1 5.1603 5.5347 4.5421 44 1 4.8109 4.4972 6.7382 45 1 4.8274 2.2850 10.2019 46 1 2.9221 1.1267 4.8346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274842800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:48 Heat of formation + Delta-G solvation = -102.479213 kcal Electronic energy + Delta-G solvation = -29459.273050 eV Core-core repulsion = 25506.538784 eV Total energy + Delta-G solvation = -3952.734266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08428 -39.31367 -38.00115 -37.21765 -36.04177 -34.07957 -33.65679 -31.98470 -30.52352 -30.08255 -28.45036 -27.64632 -25.36905 -24.63199 -23.59923 -22.78897 -20.99781 -20.74195 -20.50027 -19.12097 -17.87998 -17.26106 -16.54775 -16.40102 -16.04997 -15.82722 -15.29315 -15.11657 -14.83480 -14.44068 -14.23978 -13.91536 -13.82637 -13.56595 -13.17876 -13.07845 -12.84025 -12.74828 -12.71601 -12.13366 -12.07226 -12.02800 -11.85380 -11.69105 -11.48152 -11.29776 -11.12101 -10.92131 -10.83079 -10.65097 -10.57174 -10.46509 -10.04388 -10.04010 -9.80616 -9.41247 -9.17450 -8.66371 -7.92549 -7.75296 -7.03163 -4.59664 2.00230 2.33224 2.46206 2.86137 3.02541 3.11924 3.13674 3.21543 3.31902 3.88774 4.35460 4.48030 4.54613 4.57581 4.80297 4.96583 5.01064 5.14791 5.23222 5.25698 5.27342 5.38479 5.39121 5.42568 5.46007 5.56923 5.71314 5.73006 5.79415 5.86420 5.89472 5.92129 5.96224 6.06158 6.23662 6.34273 6.45945 6.57392 6.68805 6.69734 6.93113 7.18321 7.32757 7.45089 7.49058 7.71639 7.89254 8.06505 8.24829 8.40767 8.49069 8.67723 9.99193 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003928 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.708333 B = 7125.876551 C = 8522.171099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.361 6.361 3 C 0.481 3.519 4 O -0.501 6.501 5 C 0.156 3.844 6 H 0.098 0.902 7 C -0.118 4.118 8 C -0.089 4.089 9 H 0.075 0.925 10 C -0.145 4.145 11 C -0.132 4.132 12 C 0.103 3.897 13 N -0.603 5.603 14 C 0.570 3.430 15 O -0.519 6.519 16 C -0.092 4.092 17 C -0.215 4.215 18 C -0.079 4.079 19 C -0.225 4.225 20 C 0.089 3.911 21 C -0.445 4.445 22 H 0.093 0.907 23 C 0.084 3.916 24 N -0.804 5.804 25 Si 0.913 3.087 26 H -0.267 1.267 27 H -0.289 1.289 28 H -0.246 1.246 29 C -0.152 4.152 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.287 0.713 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -1.244 -19.013 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.277 6.277 3 C 0.324 3.676 4 O -0.388 6.388 5 C 0.051 3.949 6 H 0.116 0.884 7 C -0.157 4.157 8 C -0.108 4.108 9 H 0.094 0.906 10 C -0.202 4.202 11 C -0.170 4.170 12 C -0.019 4.019 13 N -0.340 5.340 14 C 0.362 3.638 15 O -0.396 6.396 16 C -0.095 4.095 17 C -0.235 4.235 18 C -0.097 4.097 19 C -0.244 4.244 20 C 0.086 3.914 21 C -0.473 4.473 22 H 0.111 0.889 23 C -0.136 4.136 24 N -0.428 5.428 25 Si 0.739 3.261 26 H -0.193 1.193 27 H -0.217 1.217 28 H -0.170 1.170 29 C -0.172 4.172 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.823 -1.206 -18.754 19.402 hybrid contribution 0.474 0.334 0.093 0.587 sum 5.297 -0.872 -18.661 19.418 Atomic orbital electron populations 1.23129 0.76465 1.02885 1.02460 1.86382 1.23359 1.33356 1.84620 1.22637 0.90737 0.81928 0.72252 1.90632 1.66447 1.36238 1.45466 1.20646 0.88580 0.99580 0.86081 0.88398 1.21964 0.96665 1.00480 0.96547 1.21112 0.94382 0.99873 0.95438 0.90623 1.21802 1.01175 0.99655 0.97606 1.21966 1.01763 0.99603 0.93708 1.21934 0.78994 0.99524 1.01462 1.48095 1.09307 1.65892 1.10712 1.19124 0.84485 0.76996 0.83226 1.90664 1.18712 1.51122 1.79125 1.19187 1.02637 0.96371 0.91290 1.20333 1.09058 0.96849 0.97282 1.20524 0.98579 0.97985 0.92612 1.21260 1.09660 0.97022 0.96502 1.17641 0.90191 0.90771 0.92797 1.19502 1.09386 1.26201 0.92258 0.88909 1.26169 1.01323 0.92118 0.93972 1.69692 1.36840 1.35979 1.00260 0.86313 0.80557 0.79360 0.79839 1.19314 1.21666 1.16964 1.21110 1.06112 0.99849 0.90160 0.91474 0.92611 0.88719 0.90354 0.89904 0.92497 0.92325 0.92634 0.90210 0.91001 0.86889 0.91273 0.88211 0.88137 0.87595 0.90290 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.66 16 2 O -0.36 -5.77 10.54 -43.91 -0.46 -6.24 16 3 C 0.48 8.24 4.19 36.00 0.15 8.39 16 4 O -0.50 -10.08 14.82 -26.59 -0.39 -10.47 16 5 C 0.16 2.15 3.36 -68.75 -0.23 1.92 16 6 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.12 -1.28 4.55 -26.62 -0.12 -1.41 16 8 C -0.09 -0.77 2.68 -90.58 -0.24 -1.02 16 9 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 10 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 11 C -0.13 -1.30 5.34 -26.83 -0.14 -1.44 16 12 C 0.10 1.29 5.82 -3.93 -0.02 1.27 16 13 N -0.60 -9.50 2.98 -167.89 -0.50 -10.00 16 14 C 0.57 11.57 6.92 -12.31 -0.09 11.48 16 15 O -0.52 -12.02 13.16 -23.45 -0.31 -12.32 16 16 C -0.09 -1.96 4.74 -105.04 -0.50 -2.46 16 17 C -0.22 -4.21 7.56 -38.92 -0.29 -4.51 16 18 C -0.08 -1.58 10.01 -39.73 -0.40 -1.98 16 19 C -0.23 -5.15 7.30 -38.81 -0.28 -5.43 16 20 C 0.09 2.20 5.06 -106.87 -0.54 1.66 16 21 C -0.45 -11.81 9.56 -37.73 -0.36 -12.17 16 22 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 23 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 24 N -0.80 -20.94 13.93 55.55 0.77 -20.17 16 25 Si 0.91 19.77 24.61 -169.99 -4.18 15.58 16 26 H -0.27 -5.58 6.51 56.52 0.37 -5.22 16 27 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 28 H -0.25 -5.34 7.06 56.52 0.40 -4.94 16 29 C -0.15 -3.59 9.50 -38.44 -0.37 -3.96 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 40 H 0.11 1.63 4.88 -51.93 -0.25 1.38 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.72 7.52 -52.48 -0.39 1.33 16 43 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 44 H 0.11 2.41 4.76 -52.49 -0.25 2.16 16 45 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 46 H 0.11 2.55 8.06 -52.48 -0.42 2.12 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -31.25 367.34 -8.46 -39.71 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.80 Total: 5.04 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.12 Total: -6.67 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.27 Total: -30.17 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.17 Total: -29.03 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.18 Total: 15.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.25 -8.46 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274842800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.770 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds