Wall clock time and date at job start Tue Mar 31 2020 17:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00263 * 2 1 4 4 O 1.20823 * 119.99655 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00143 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.70007 * 8.98466 * 5 3 2 7 7 C 1.53188 * 109.58845 * 129.34283 * 5 3 2 8 8 C 1.53031 * 109.31507 * 174.42181 * 7 5 3 9 9 H 1.09004 * 109.46225 * 58.65716 * 8 7 5 10 10 C 1.53000 * 109.45999 * 178.62625 * 8 7 5 11 11 C 1.53042 * 109.53755 * 298.63166 * 8 7 5 12 12 C 1.52763 * 109.38234 * 61.24365 * 11 8 7 13 13 N 1.46925 * 109.00441 * 305.58743 * 12 11 8 14 14 C 1.34780 * 120.62889 * 233.58807 * 13 12 11 15 15 O 1.21544 * 120.00075 * 186.74339 * 14 13 12 16 16 C 1.47891 * 120.00049 * 6.73474 * 14 13 12 17 17 C 1.39920 * 120.02325 * 53.65727 * 16 14 13 18 18 C 1.38321 * 120.35558 * 179.97438 * 17 16 14 19 19 C 1.37751 * 120.41511 * 359.97438 * 18 17 16 20 20 C 1.40744 * 120.04028 * 0.02562 * 19 18 17 21 21 C 1.41437 * 120.18239 * 180.27500 * 20 19 18 22 22 H 1.07999 * 120.00517 * 148.61323 * 21 20 19 23 23 C 1.39934 * 119.99564 * 328.61833 * 21 20 19 24 24 N 1.30831 * 120.00155 * 162.09819 * 23 21 20 25 25 Si 1.86798 * 120.00097 * 342.09585 * 23 21 20 26 26 H 1.48505 * 109.47021 * 90.85959 * 25 23 21 27 27 H 1.48504 * 109.47298 * 210.85750 * 25 23 21 28 28 H 1.48494 * 109.47229 * 330.86067 * 25 23 21 29 29 C 1.38992 * 120.02342 * 233.63858 * 16 14 13 30 30 H 1.08998 * 109.47196 * 299.99570 * 1 2 3 31 31 H 1.08997 * 109.46783 * 59.99998 * 1 2 3 32 32 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.49826 * 294.37298 * 7 5 3 34 34 H 1.09003 * 109.49645 * 54.46341 * 7 5 3 35 35 H 1.09001 * 109.47267 * 60.00418 * 10 8 7 36 36 H 1.09002 * 109.47356 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47122 * 299.99668 * 10 8 7 38 38 H 1.09010 * 109.49829 * 181.31503 * 11 8 7 39 39 H 1.08992 * 109.50107 * 301.41337 * 11 8 7 40 40 H 1.08999 * 109.50833 * 185.70776 * 12 11 8 41 41 H 1.08995 * 109.43421 * 65.41893 * 12 11 8 42 42 H 1.08005 * 119.81995 * 359.95472 * 17 16 14 43 43 H 1.08004 * 119.79133 * 179.97438 * 18 17 16 44 44 H 1.08002 * 119.97831 * 180.02562 * 19 18 17 45 45 H 0.97003 * 120.00109 * 179.97438 * 24 23 21 46 46 H 1.08003 * 120.20823 * 359.97438 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9864 0.2818 -0.1593 7 6 4.0318 2.2151 -1.1156 8 6 5.5480 2.4001 -1.0221 9 1 6.0382 1.4302 -1.1073 10 6 6.0212 3.3116 -2.1563 11 6 5.9042 3.0350 0.3241 12 6 5.4592 2.1092 1.4548 13 7 4.0313 1.8045 1.2898 14 6 3.1636 2.0124 2.2999 15 8 2.0101 1.6438 2.1958 16 6 3.6151 2.6889 3.5351 17 6 4.2479 3.9345 3.4599 18 6 4.6725 4.5735 4.6108 19 6 4.4769 3.9918 5.8441 20 6 3.8423 2.7392 5.9396 21 6 3.6348 2.1418 7.2047 22 1 2.7748 1.5095 7.3689 23 6 4.5438 2.3702 8.2438 24 7 4.1971 2.1271 9.4816 25 14 6.2526 3.0221 7.8634 26 1 6.2374 4.5064 7.9083 27 1 7.2147 2.5063 8.8702 28 1 6.6640 2.5721 6.5095 29 6 3.4107 2.0878 4.7716 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.7769 1.7846 -2.0840 34 1 3.5399 3.1816 -1.0058 35 1 5.5309 4.2814 -2.0716 36 1 7.1011 3.4439 -2.0897 37 1 5.7687 2.8592 -3.1153 38 1 6.9820 3.1879 0.3804 39 1 5.3947 3.9937 0.4203 40 1 5.6191 2.6026 2.4135 41 1 6.0367 1.1856 1.4158 42 1 4.4060 4.3994 2.4979 43 1 5.1603 5.5347 4.5421 44 1 4.8109 4.4972 6.7382 45 1 4.8274 2.2850 10.2019 46 1 2.9221 1.1267 4.8346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274842800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:47 Heat of formation + Delta-G solvation = -119.999936 kcal Electronic energy + Delta-G solvation = -29460.032805 eV Core-core repulsion = 25506.538784 eV Total energy + Delta-G solvation = -3953.494021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38636 -40.71498 -39.37315 -38.71175 -37.36853 -35.65204 -35.01766 -33.21502 -32.20482 -31.70279 -29.43064 -28.69339 -27.21286 -25.76462 -24.75526 -24.04051 -22.63795 -22.24234 -21.48719 -20.46660 -19.33307 -18.65190 -18.06166 -17.81278 -17.59990 -17.02927 -16.74737 -16.65669 -16.28055 -15.53414 -15.33127 -15.27862 -14.99858 -14.63641 -14.61802 -14.51848 -14.36351 -14.11850 -13.98905 -13.72635 -13.42342 -13.10554 -12.89656 -12.81942 -12.71266 -12.69384 -12.38693 -12.32042 -12.12611 -11.78679 -11.75590 -11.67600 -11.60970 -11.43127 -11.24648 -11.09690 -10.83200 -9.92033 -9.66204 -9.53709 -8.91464 -6.57959 0.29297 0.70497 1.03732 1.28215 1.42710 1.48277 1.58191 1.73547 1.97605 2.12830 2.54070 3.35926 3.43509 3.69589 3.71690 3.76492 3.94311 4.03059 4.10526 4.24614 4.24801 4.31538 4.36351 4.41050 4.56659 4.62087 4.63619 4.68167 4.72859 4.82797 4.87195 4.91261 4.96812 5.01635 5.10761 5.12678 5.20947 5.36307 5.39719 5.42073 5.48420 5.54601 5.61199 5.69955 5.82299 6.00964 6.16793 6.28385 6.62785 6.72295 6.75554 6.93333 8.17496 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003928 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.708333 B = 7125.876551 C = 8522.171099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.367 6.367 3 C 0.474 3.526 4 O -0.538 6.538 5 C 0.151 3.849 6 H 0.128 0.872 7 C -0.111 4.111 8 C -0.083 4.083 9 H 0.097 0.903 10 C -0.142 4.142 11 C -0.127 4.127 12 C 0.094 3.906 13 N -0.593 5.593 14 C 0.561 3.439 15 O -0.561 6.561 16 C -0.093 4.093 17 C -0.186 4.186 18 C -0.073 4.073 19 C -0.229 4.229 20 C 0.076 3.924 21 C -0.490 4.490 22 H 0.047 0.953 23 C 0.045 3.955 24 N -0.850 5.850 25 Si 0.970 3.030 26 H -0.247 1.247 27 H -0.276 1.276 28 H -0.246 1.246 29 C -0.177 4.177 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.147 0.853 44 H 0.110 0.890 45 H 0.296 0.704 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.273 0.179 -22.573 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.283 6.283 3 C 0.319 3.681 4 O -0.428 6.428 5 C 0.047 3.953 6 H 0.145 0.855 7 C -0.150 4.150 8 C -0.101 4.101 9 H 0.115 0.885 10 C -0.199 4.199 11 C -0.165 4.165 12 C -0.026 4.026 13 N -0.328 5.328 14 C 0.351 3.649 15 O -0.442 6.442 16 C -0.096 4.096 17 C -0.205 4.205 18 C -0.091 4.091 19 C -0.248 4.248 20 C 0.073 3.927 21 C -0.519 4.519 22 H 0.065 0.935 23 C -0.169 4.169 24 N -0.476 5.476 25 Si 0.791 3.209 26 H -0.172 1.172 27 H -0.203 1.203 28 H -0.169 1.169 29 C -0.197 4.197 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.165 0.835 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.442 0.210 -22.348 23.891 hybrid contribution -0.751 -0.124 0.956 1.222 sum 7.691 0.085 -21.392 22.733 Atomic orbital electron populations 1.23340 0.75342 1.05061 1.01581 1.86379 1.24656 1.33094 1.84190 1.23402 0.92202 0.81550 0.70928 1.90600 1.67642 1.37417 1.47116 1.21083 0.86442 1.01909 0.85835 0.85463 1.21999 0.98256 0.98522 0.96176 1.21127 0.92447 1.01277 0.95298 0.88485 1.21770 1.01932 0.98845 0.97332 1.21972 1.03297 0.98171 0.93013 1.22231 0.77054 1.01457 1.01888 1.48138 1.10063 1.64276 1.10282 1.19016 0.84544 0.77360 0.83950 1.90653 1.20505 1.52880 1.80118 1.19403 1.01933 0.97197 0.91080 1.20772 1.05694 0.95243 0.98819 1.20983 0.97574 0.99360 0.91159 1.21426 1.09125 0.96101 0.98137 1.17701 0.91102 0.91782 0.92089 1.19436 1.09750 1.28235 0.94513 0.93461 1.26955 1.04548 0.92085 0.93317 1.69730 1.38487 1.38164 1.01223 0.85457 0.75791 0.79850 0.79776 1.17179 1.20277 1.16923 1.21044 1.07521 0.99764 0.91390 0.94465 0.91358 0.85071 0.88143 0.92263 0.93375 0.90886 0.91705 0.87317 0.92142 0.88707 0.88750 0.84891 0.83530 0.87215 0.89389 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.56 113.37 1.20 2.26 16 2 O -0.37 -11.63 10.54 -46.98 -0.50 -12.13 16 3 C 0.47 16.06 4.19 71.23 0.30 16.36 16 4 O -0.54 -21.97 14.82 29.48 0.44 -21.53 16 5 C 0.15 3.83 3.36 44.23 0.15 3.98 16 6 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 7 C -0.11 -2.06 4.55 30.67 0.14 -1.92 16 8 C -0.08 -1.04 2.68 -10.77 -0.03 -1.07 16 9 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 10 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 11 C -0.13 -1.89 5.34 30.53 0.16 -1.72 16 12 C 0.09 2.02 5.82 86.22 0.50 2.52 16 13 N -0.59 -17.53 2.98 -803.36 -2.39 -19.93 16 14 C 0.56 22.74 6.92 86.80 0.60 23.34 16 15 O -0.56 -26.85 13.16 23.66 0.31 -26.54 16 16 C -0.09 -3.96 4.74 -20.13 -0.10 -4.05 16 17 C -0.19 -6.73 7.56 22.70 0.17 -6.55 16 18 C -0.07 -2.66 10.01 22.17 0.22 -2.44 16 19 C -0.23 -10.16 7.30 22.77 0.17 -10.00 16 20 C 0.08 3.88 5.06 -21.32 -0.11 3.77 16 21 C -0.49 -27.96 9.56 23.47 0.22 -27.74 16 22 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 23 C 0.05 2.41 5.40 85.25 0.46 2.87 16 24 N -0.85 -46.57 13.93 21.82 0.30 -46.26 16 25 Si 0.97 40.31 24.61 68.60 1.69 42.00 16 26 H -0.25 -9.41 6.51 99.48 0.65 -8.77 16 27 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 28 H -0.25 -10.08 7.06 99.48 0.70 -9.38 16 29 C -0.18 -8.75 9.50 23.01 0.22 -8.54 16 30 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.42 16 34 H 0.06 1.41 7.82 -2.39 -0.02 1.39 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 1.07 7.90 -2.39 -0.02 1.05 16 40 H 0.09 2.41 4.88 -2.39 -0.01 2.40 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.13 3.99 7.52 -2.91 -0.02 3.97 16 43 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.11 4.78 4.76 -2.91 -0.01 4.77 16 45 H 0.30 14.40 8.30 -92.71 -0.77 13.63 16 46 H 0.08 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -75.13 367.34 5.71 -69.41 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.92 Total: 24.64 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.94 Total: -9.66 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -2.09 Total: -66.19 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: 0.25 Total: -60.20 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.69 Total: 42.00 kcal Total: -75.13 5.71 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274842800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.588 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds