Wall clock time and date at job start Tue Mar 31 2020 17:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00065 * 2 1 4 4 O 1.20823 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99740 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.70203 * 19.78318 * 5 3 2 7 7 C 1.53194 * 109.58707 * 259.42561 * 5 3 2 8 8 C 1.53042 * 109.31359 * 185.58197 * 7 5 3 9 9 H 1.08994 * 109.45706 * 181.38373 * 8 7 5 10 10 C 1.53005 * 109.45826 * 301.34428 * 8 7 5 11 11 C 1.53039 * 109.53852 * 61.36172 * 8 7 5 12 12 C 1.53623 * 109.24483 * 298.51507 * 11 8 7 13 13 N 1.46929 * 109.58166 * 140.13767 * 5 3 2 14 14 C 1.34768 * 120.63179 * 353.37278 * 13 5 3 15 15 O 1.21549 * 120.00316 * 62.24738 * 14 13 5 16 16 C 1.47893 * 119.99899 * 242.24225 * 14 13 5 17 17 C 1.39926 * 120.02265 * 15.10626 * 16 14 13 18 18 C 1.38324 * 120.35485 * 180.02562 * 17 16 14 19 19 C 1.37754 * 120.41427 * 359.72010 * 18 17 16 20 20 C 1.40751 * 120.03640 * 0.55385 * 19 18 17 21 21 C 1.41440 * 120.17595 * 179.72123 * 20 19 18 22 22 H 1.08001 * 119.99783 * 352.55497 * 21 20 19 23 23 C 1.39938 * 120.00256 * 172.55586 * 21 20 19 24 24 N 1.30823 * 119.99711 * 323.18887 * 23 21 20 25 25 Si 1.86792 * 120.00177 * 143.17994 * 23 21 20 26 26 H 1.48507 * 109.46905 * 90.00469 * 25 23 21 27 27 H 1.48500 * 109.47637 * 330.00600 * 25 23 21 28 28 H 1.48502 * 109.47543 * 210.00064 * 25 23 21 29 29 C 1.38992 * 120.02424 * 195.12563 * 16 14 13 30 30 H 1.09000 * 109.46914 * 299.99744 * 1 2 3 31 31 H 1.08997 * 109.47164 * 60.00367 * 1 2 3 32 32 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.49637 * 305.53202 * 7 5 3 34 34 H 1.08998 * 109.49942 * 65.62758 * 7 5 3 35 35 H 1.09001 * 109.46569 * 59.99959 * 10 8 7 36 36 H 1.08995 * 109.46732 * 179.97438 * 10 8 7 37 37 H 1.08999 * 109.47178 * 300.00107 * 10 8 7 38 38 H 1.09008 * 109.49711 * 58.58766 * 11 8 7 39 39 H 1.08999 * 109.49997 * 178.64969 * 11 8 7 40 40 H 1.08996 * 109.73616 * 295.11809 * 12 11 8 41 41 H 1.09002 * 109.66677 * 174.54680 * 12 11 8 42 42 H 1.07994 * 119.81862 * 359.97438 * 17 16 14 43 43 H 1.07997 * 119.79176 * 179.97438 * 18 17 16 44 44 H 1.08004 * 119.98118 * 180.30068 * 19 18 17 45 45 H 0.97003 * 119.99810 * 355.30394 * 24 23 21 46 46 H 1.08000 * 120.20338 * 0.02562 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9839 0.3296 -0.3464 7 6 4.0648 1.5664 1.4195 8 6 5.5795 1.7831 1.3894 9 1 5.9402 1.9665 2.4014 10 6 6.2616 0.5359 0.8235 11 6 5.9066 2.9886 0.5051 12 6 5.4298 2.7094 -0.9283 13 7 4.0029 2.3615 -0.8867 14 6 3.1123 3.0228 -1.6521 15 8 2.2157 3.6569 -1.1310 16 6 3.2259 2.9771 -3.1259 17 6 4.0394 2.0159 -3.7359 18 6 4.1512 1.9672 -5.1138 19 6 3.4588 2.8604 -5.9015 20 6 2.6401 3.8380 -5.3056 21 6 1.9325 4.7602 -6.1114 22 1 2.1108 4.7949 -7.1760 23 6 1.0015 5.6277 -5.5292 24 7 0.2524 5.2147 -4.5394 25 14 0.8285 7.3755 -6.1652 26 1 -0.1880 7.4101 -7.2473 27 1 2.1345 7.8401 -6.6980 28 1 0.4013 8.2659 -5.0562 29 6 2.5250 3.8892 -3.9061 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.5764 2.4639 1.7994 34 1 3.8309 0.7222 2.0680 35 1 5.9005 0.3519 -0.1884 36 1 7.3403 0.6902 0.8015 37 1 6.0297 -0.3226 1.4537 38 1 5.4008 3.8727 0.8936 39 1 6.9835 3.1570 0.5033 40 1 5.9963 1.8789 -1.3494 41 1 5.5712 3.5992 -1.5418 42 1 4.5836 1.3087 -3.1276 43 1 4.7820 1.2218 -5.5750 44 1 3.5474 2.8130 -6.9769 45 1 0.2935 4.2885 -4.2539 46 1 1.8965 4.6333 -3.4395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274842803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:52 Heat of formation + Delta-G solvation = -82.640889 kcal Electronic energy + Delta-G solvation = -29882.262214 eV Core-core repulsion = 25930.388203 eV Total energy + Delta-G solvation = -3951.874011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97101 -39.26073 -37.99826 -36.97827 -36.07649 -34.08919 -33.35926 -31.71562 -30.03644 -29.22468 -28.00389 -27.50992 -25.31042 -24.90024 -23.91127 -22.49837 -20.96706 -20.77981 -19.78940 -18.63703 -17.99532 -17.32593 -16.72560 -16.34427 -15.58464 -15.39825 -15.26772 -14.79491 -14.58380 -14.33805 -14.12990 -13.95466 -13.84841 -13.58816 -13.20849 -12.91195 -12.75206 -12.38293 -12.19819 -12.12917 -11.96289 -11.77687 -11.64595 -11.41805 -11.24012 -11.03025 -10.92055 -10.88440 -10.65409 -10.59318 -10.52431 -10.40664 -10.30090 -9.88224 -9.68692 -8.96872 -8.88103 -7.94916 -7.76856 -7.70913 -7.30080 -4.46441 2.00395 2.29913 2.69586 2.80393 3.12412 3.21792 3.35868 3.49875 3.56128 3.96894 4.45578 4.57158 4.67668 4.71684 4.97079 5.02543 5.10757 5.19443 5.28955 5.31616 5.39509 5.46297 5.53857 5.56091 5.60741 5.65948 5.73175 5.85904 5.88775 5.97233 6.04914 6.09843 6.13465 6.32065 6.39248 6.49961 6.65498 6.93766 6.97538 7.13773 7.23590 7.55795 7.64262 7.76264 7.79009 7.86835 7.95461 8.08123 8.23205 8.66513 8.73036 8.79970 9.87909 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.004114 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.428916 B = 6803.930309 C = 7446.416127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.426 3.574 4 O -0.441 6.441 5 C 0.185 3.815 6 H 0.096 0.904 7 C -0.122 4.122 8 C -0.084 4.084 9 H 0.075 0.925 10 C -0.155 4.155 11 C -0.134 4.134 12 C 0.144 3.856 13 N -0.672 5.672 14 C 0.567 3.433 15 O -0.441 6.441 16 C -0.109 4.109 17 C -0.228 4.228 18 C -0.086 4.086 19 C -0.224 4.224 20 C 0.085 3.915 21 C -0.516 4.516 22 H 0.079 0.921 23 C 0.040 3.960 24 N -0.764 5.764 25 Si 1.063 2.937 26 H -0.275 1.275 27 H -0.272 1.272 28 H -0.271 1.271 29 C -0.180 4.180 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.305 0.695 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -8.885 10.539 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.281 6.281 3 C 0.264 3.736 4 O -0.322 6.322 5 C 0.080 3.920 6 H 0.114 0.886 7 C -0.161 4.161 8 C -0.102 4.102 9 H 0.093 0.907 10 C -0.213 4.213 11 C -0.173 4.173 12 C 0.022 3.978 13 N -0.416 5.416 14 C 0.358 3.642 15 O -0.309 6.309 16 C -0.113 4.113 17 C -0.248 4.248 18 C -0.104 4.104 19 C -0.244 4.244 20 C 0.082 3.918 21 C -0.542 4.542 22 H 0.097 0.903 23 C -0.186 4.186 24 N -0.386 5.386 25 Si 0.886 3.114 26 H -0.201 1.201 27 H -0.197 1.197 28 H -0.196 1.196 29 C -0.200 4.200 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.473 -6.773 11.112 14.535 hybrid contribution 0.634 -1.617 -0.324 1.767 sum 7.106 -8.391 10.788 15.404 Atomic orbital electron populations 1.23220 0.76385 1.03298 1.02740 1.86447 1.23364 1.33577 1.84733 1.23795 0.92259 0.82035 0.75475 1.90986 1.66572 1.34587 1.40059 1.20292 0.86552 0.92626 0.92549 0.88648 1.21975 0.96738 1.03004 0.94342 1.21004 0.93908 0.95654 0.99649 0.90710 1.21990 1.00431 0.97081 1.01749 1.22101 1.01068 0.98181 0.95901 1.21423 0.79578 1.00799 0.96039 1.46946 1.07651 1.40044 1.46994 1.19022 0.80356 0.77531 0.87258 1.90778 1.33050 1.31619 1.75462 1.19763 1.00984 0.99557 0.90995 1.20289 1.06738 1.03702 0.94037 1.20465 0.98513 0.97832 0.93579 1.20882 1.06089 0.99887 0.97516 1.17543 0.91923 0.90867 0.91499 1.20596 1.20335 1.16103 0.97127 0.90251 1.27176 0.91381 1.06347 0.93699 1.70469 1.26353 1.21843 1.19890 0.83698 0.77468 0.73273 0.77009 1.20072 1.19722 1.19586 1.21593 1.04057 1.00882 0.93450 0.92108 0.91717 0.88260 0.90518 0.90593 0.91801 0.92420 0.92601 0.91345 0.90761 0.91794 0.90095 0.88785 0.89063 0.88893 0.88075 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.36 -5.64 10.57 -39.27 -0.41 -6.06 16 3 C 0.43 7.60 6.40 36.00 0.23 7.83 16 4 O -0.44 -9.73 12.26 -27.24 -0.33 -10.06 16 5 C 0.18 2.75 2.90 -68.75 -0.20 2.55 16 6 H 0.10 1.23 6.69 -51.93 -0.35 0.88 16 7 C -0.12 -1.45 4.90 -26.61 -0.13 -1.58 16 8 C -0.08 -0.81 3.19 -90.58 -0.29 -1.10 16 9 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 10 C -0.16 -1.30 8.43 37.16 0.31 -0.98 16 11 C -0.13 -1.47 5.64 -26.39 -0.15 -1.62 16 12 C 0.14 1.98 5.05 -3.48 -0.02 1.96 16 13 N -0.67 -11.61 2.31 -167.35 -0.39 -11.99 16 14 C 0.57 12.78 5.41 -12.31 -0.07 12.72 16 15 O -0.44 -11.52 13.36 -20.33 -0.27 -11.80 16 16 C -0.11 -2.63 5.75 -105.03 -0.60 -3.23 16 17 C -0.23 -4.95 9.17 -38.92 -0.36 -5.31 16 18 C -0.09 -1.87 10.01 -39.73 -0.40 -2.27 16 19 C -0.22 -5.46 9.78 -38.81 -0.38 -5.84 16 20 C 0.08 2.27 5.58 -106.87 -0.60 1.68 16 21 C -0.52 -13.76 8.92 -37.73 -0.34 -14.10 16 22 H 0.08 2.04 8.05 -52.49 -0.42 1.61 16 23 C 0.04 1.03 4.88 -17.34 -0.08 0.95 16 24 N -0.76 -21.01 12.03 55.55 0.67 -20.34 16 25 Si 1.06 21.85 30.05 -169.99 -5.11 16.74 16 26 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 C -0.18 -4.86 7.74 -38.44 -0.30 -5.16 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.60 4.97 -51.93 -0.26 0.34 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 41 H 0.08 1.23 7.93 -51.93 -0.41 0.81 16 42 H 0.09 1.79 7.09 -52.49 -0.37 1.42 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 45 H 0.30 8.73 6.71 -40.82 -0.27 8.46 16 46 H 0.12 3.59 5.23 -52.49 -0.27 3.31 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -32.37 366.92 -9.18 -41.55 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.57 Total: 8.38 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.29 Total: -11.95 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.28 Total: -32.34 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.02 Total: -27.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.11 Total: 16.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.37 -9.18 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274842803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.088 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds