Wall clock time and date at job start Tue Mar 31 2020 17:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00065 * 2 1 4 4 O 1.20823 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99740 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.70203 * 19.78318 * 5 3 2 7 7 C 1.53194 * 109.58707 * 259.42561 * 5 3 2 8 8 C 1.53042 * 109.31359 * 185.58197 * 7 5 3 9 9 H 1.08994 * 109.45706 * 181.38373 * 8 7 5 10 10 C 1.53005 * 109.45826 * 301.34428 * 8 7 5 11 11 C 1.53039 * 109.53852 * 61.36172 * 8 7 5 12 12 C 1.53623 * 109.24483 * 298.51507 * 11 8 7 13 13 N 1.46929 * 109.58166 * 140.13767 * 5 3 2 14 14 C 1.34768 * 120.63179 * 353.37278 * 13 5 3 15 15 O 1.21549 * 120.00316 * 62.24738 * 14 13 5 16 16 C 1.47893 * 119.99899 * 242.24225 * 14 13 5 17 17 C 1.39926 * 120.02265 * 15.10626 * 16 14 13 18 18 C 1.38324 * 120.35485 * 180.02562 * 17 16 14 19 19 C 1.37754 * 120.41427 * 359.72010 * 18 17 16 20 20 C 1.40751 * 120.03640 * 0.55385 * 19 18 17 21 21 C 1.41440 * 120.17595 * 179.72123 * 20 19 18 22 22 H 1.08001 * 119.99783 * 352.55497 * 21 20 19 23 23 C 1.39938 * 120.00256 * 172.55586 * 21 20 19 24 24 N 1.30823 * 119.99711 * 323.18887 * 23 21 20 25 25 Si 1.86792 * 120.00177 * 143.17994 * 23 21 20 26 26 H 1.48507 * 109.46905 * 90.00469 * 25 23 21 27 27 H 1.48500 * 109.47637 * 330.00600 * 25 23 21 28 28 H 1.48502 * 109.47543 * 210.00064 * 25 23 21 29 29 C 1.38992 * 120.02424 * 195.12563 * 16 14 13 30 30 H 1.09000 * 109.46914 * 299.99744 * 1 2 3 31 31 H 1.08997 * 109.47164 * 60.00367 * 1 2 3 32 32 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.49637 * 305.53202 * 7 5 3 34 34 H 1.08998 * 109.49942 * 65.62758 * 7 5 3 35 35 H 1.09001 * 109.46569 * 59.99959 * 10 8 7 36 36 H 1.08995 * 109.46732 * 179.97438 * 10 8 7 37 37 H 1.08999 * 109.47178 * 300.00107 * 10 8 7 38 38 H 1.09008 * 109.49711 * 58.58766 * 11 8 7 39 39 H 1.08999 * 109.49997 * 178.64969 * 11 8 7 40 40 H 1.08996 * 109.73616 * 295.11809 * 12 11 8 41 41 H 1.09002 * 109.66677 * 174.54680 * 12 11 8 42 42 H 1.07994 * 119.81862 * 359.97438 * 17 16 14 43 43 H 1.07997 * 119.79176 * 179.97438 * 18 17 16 44 44 H 1.08004 * 119.98118 * 180.30068 * 19 18 17 45 45 H 0.97003 * 119.99810 * 355.30394 * 24 23 21 46 46 H 1.08000 * 120.20338 * 0.02562 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9839 0.3296 -0.3464 7 6 4.0648 1.5664 1.4195 8 6 5.5795 1.7831 1.3894 9 1 5.9402 1.9665 2.4014 10 6 6.2616 0.5359 0.8235 11 6 5.9066 2.9886 0.5051 12 6 5.4298 2.7094 -0.9283 13 7 4.0029 2.3615 -0.8867 14 6 3.1123 3.0228 -1.6521 15 8 2.2157 3.6569 -1.1310 16 6 3.2259 2.9771 -3.1259 17 6 4.0394 2.0159 -3.7359 18 6 4.1512 1.9672 -5.1138 19 6 3.4588 2.8604 -5.9015 20 6 2.6401 3.8380 -5.3056 21 6 1.9325 4.7602 -6.1114 22 1 2.1108 4.7949 -7.1760 23 6 1.0015 5.6277 -5.5292 24 7 0.2524 5.2147 -4.5394 25 14 0.8285 7.3755 -6.1652 26 1 -0.1880 7.4101 -7.2473 27 1 2.1345 7.8401 -6.6980 28 1 0.4013 8.2659 -5.0562 29 6 2.5250 3.8892 -3.9061 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.5764 2.4639 1.7994 34 1 3.8309 0.7222 2.0680 35 1 5.9005 0.3519 -0.1884 36 1 7.3403 0.6902 0.8015 37 1 6.0297 -0.3226 1.4537 38 1 5.4008 3.8727 0.8936 39 1 6.9835 3.1570 0.5033 40 1 5.9963 1.8789 -1.3494 41 1 5.5712 3.5992 -1.5418 42 1 4.5836 1.3087 -3.1276 43 1 4.7820 1.2218 -5.5750 44 1 3.5474 2.8130 -6.9769 45 1 0.2935 4.2885 -4.2539 46 1 1.8965 4.6333 -3.4395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274842803.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:51 Heat of formation + Delta-G solvation = -100.177412 kcal Electronic energy + Delta-G solvation = -29883.022655 eV Core-core repulsion = 25930.388203 eV Total energy + Delta-G solvation = -3952.634452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35205 -40.73124 -39.48220 -38.66291 -37.50466 -35.98365 -34.66040 -32.87105 -31.84384 -31.13806 -29.10247 -28.45264 -27.14139 -26.17812 -25.04568 -24.06233 -22.77926 -22.30291 -21.15865 -20.27932 -19.22476 -18.77234 -18.24842 -17.70809 -17.24248 -16.77795 -16.59926 -16.38707 -15.97381 -15.75470 -15.65443 -15.30631 -15.13711 -14.72049 -14.54844 -14.50676 -14.11963 -14.00288 -13.74389 -13.59759 -13.25570 -13.18181 -12.88929 -12.74306 -12.65099 -12.40871 -12.22515 -12.14634 -12.02343 -11.95154 -11.82912 -11.71239 -11.57392 -11.52411 -11.30874 -10.84279 -10.58916 -9.72668 -9.64439 -9.32513 -9.27125 -6.50110 0.15218 0.91956 0.92663 1.42218 1.48700 1.51211 1.73828 1.79023 2.10600 2.23807 2.56941 3.49621 3.52292 3.68533 3.80065 3.92586 3.98879 4.07171 4.12834 4.17359 4.20383 4.32554 4.38814 4.54132 4.55841 4.59026 4.73641 4.75693 4.78722 4.89803 4.93126 4.99019 5.03247 5.08753 5.18537 5.21240 5.27088 5.29411 5.37980 5.55604 5.59303 5.67001 5.82240 5.84111 5.91215 6.09165 6.25456 6.40855 6.56808 6.69657 6.85425 7.03471 7.82028 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.004114 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.428916 B = 6803.930309 C = 7446.416127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.419 3.581 4 O -0.493 6.493 5 C 0.181 3.819 6 H 0.130 0.870 7 C -0.117 4.117 8 C -0.076 4.076 9 H 0.096 0.904 10 C -0.152 4.152 11 C -0.129 4.129 12 C 0.136 3.864 13 N -0.670 5.670 14 C 0.571 3.429 15 O -0.490 6.490 16 C -0.121 4.121 17 C -0.202 4.202 18 C -0.081 4.081 19 C -0.230 4.230 20 C 0.059 3.941 21 C -0.553 4.553 22 H 0.082 0.918 23 C 0.005 3.995 24 N -0.795 5.795 25 Si 1.114 2.886 26 H -0.250 1.250 27 H -0.257 1.257 28 H -0.276 1.276 29 C -0.217 4.217 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.144 0.856 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.106 0.894 45 H 0.283 0.717 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.518 -11.655 11.037 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.260 3.740 4 O -0.378 6.378 5 C 0.078 3.922 6 H 0.147 0.853 7 C -0.155 4.155 8 C -0.095 4.095 9 H 0.114 0.886 10 C -0.209 4.209 11 C -0.167 4.167 12 C 0.015 3.985 13 N -0.414 5.414 14 C 0.362 3.638 15 O -0.362 6.362 16 C -0.125 4.125 17 C -0.221 4.221 18 C -0.099 4.099 19 C -0.249 4.249 20 C 0.056 3.944 21 C -0.579 4.579 22 H 0.100 0.900 23 C -0.215 4.215 24 N -0.416 5.416 25 Si 0.929 3.071 26 H -0.174 1.174 27 H -0.181 1.181 28 H -0.201 1.201 29 C -0.238 4.238 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.162 0.838 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.894 -9.609 11.614 18.031 hybrid contribution -0.308 -0.975 -0.400 1.098 sum 9.586 -10.584 11.213 18.156 Atomic orbital electron populations 1.23481 0.75211 1.05832 1.01609 1.86448 1.24556 1.32339 1.84048 1.24599 0.93671 0.81821 0.73889 1.90989 1.67871 1.36389 1.42574 1.20753 0.84556 0.92833 0.94078 0.85254 1.22008 0.98314 1.02738 0.92487 1.21023 0.92001 0.95810 1.00643 0.88561 1.21971 1.01187 0.96402 1.01332 1.22087 1.02515 0.98061 0.94058 1.21746 0.77609 1.01092 0.98014 1.46950 1.08223 1.39883 1.46352 1.18977 0.80302 0.77279 0.87215 1.90772 1.35555 1.33834 1.76003 1.20126 1.00742 0.99423 0.92222 1.20739 1.04460 1.02314 0.94615 1.20954 0.97842 0.97663 0.93445 1.21200 1.05565 0.99530 0.98639 1.17890 0.92922 0.91912 0.91636 1.20801 1.21778 1.17983 0.97379 0.89984 1.28667 0.90178 1.09808 0.92805 1.70593 1.28462 1.20483 1.22061 0.83116 0.78744 0.68254 0.76960 1.17376 1.18119 1.20113 1.21433 1.06007 1.02198 0.94131 0.91872 0.94359 0.83774 0.93507 0.87865 0.92557 0.90788 0.91161 0.93810 0.87639 0.88707 0.92242 0.84878 0.84316 0.87588 0.90434 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.02 16 2 O -0.36 -10.75 10.57 -51.45 -0.54 -11.30 16 3 C 0.42 15.06 6.40 71.23 0.46 15.52 16 4 O -0.49 -23.08 12.26 30.10 0.37 -22.71 16 5 C 0.18 5.07 2.90 44.23 0.13 5.20 16 6 H 0.13 2.80 6.69 -2.39 -0.02 2.78 16 7 C -0.12 -2.52 4.90 30.67 0.15 -2.37 16 8 C -0.08 -1.18 3.19 -10.76 -0.03 -1.21 16 9 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 10 C -0.15 -1.70 8.43 71.98 0.61 -1.09 16 11 C -0.13 -2.50 5.64 30.82 0.17 -2.32 16 12 C 0.14 3.43 5.05 86.51 0.44 3.87 16 13 N -0.67 -22.59 2.31 -801.67 -1.85 -24.45 16 14 C 0.57 26.67 5.41 86.80 0.47 27.14 16 15 O -0.49 -27.59 13.36 20.66 0.28 -27.31 16 16 C -0.12 -5.98 5.75 -20.13 -0.12 -6.09 16 17 C -0.20 -8.30 9.17 22.70 0.21 -8.09 16 18 C -0.08 -3.31 10.01 22.18 0.22 -3.08 16 19 C -0.23 -11.06 9.78 22.77 0.22 -10.83 16 20 C 0.06 3.30 5.58 -21.32 -0.12 3.18 16 21 C -0.55 -30.97 8.92 23.47 0.21 -30.76 16 22 H 0.08 4.37 8.05 -2.91 -0.02 4.35 16 23 C 0.00 0.25 4.88 85.25 0.42 0.67 16 24 N -0.79 -47.20 12.03 21.82 0.26 -46.94 16 25 Si 1.11 45.63 30.05 68.60 2.06 47.69 16 26 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 27 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 28 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 29 C -0.22 -12.49 7.74 23.01 0.18 -12.31 16 30 H 0.06 1.59 8.13 -2.39 -0.02 1.58 16 31 H 0.04 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 0.72 4.97 -2.39 -0.01 0.71 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.84 6.54 -2.39 -0.02 1.83 16 41 H 0.06 1.76 7.93 -2.39 -0.02 1.74 16 42 H 0.13 4.42 7.09 -2.91 -0.02 4.40 16 43 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 44 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 45 H 0.28 17.86 6.71 -92.71 -0.62 17.24 16 46 H 0.09 5.62 5.23 -2.91 -0.02 5.61 16 Total: -1.00 -79.74 366.92 6.51 -73.23 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 1.14 Total: 32.34 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.81 Total: -20.56 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.59 Total: -71.39 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: 0.10 Total: -61.32 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.06 Total: 47.69 kcal Total: -79.74 6.51 -73.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274842803.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.945 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds