Wall clock time and date at job start Tue Mar 31 2020 17:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99799 * 2 1 4 4 O 1.20820 * 120.00236 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99757 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.45633 * 300.02112 * 5 3 2 7 7 C 1.53037 * 109.46166 * 59.99237 * 5 3 2 8 8 C 1.53191 * 109.31390 * 181.36957 * 7 5 3 9 9 N 1.46927 * 108.77967 * 305.37226 * 8 7 5 10 10 C 1.34776 * 120.63014 * 233.58601 * 9 8 7 11 11 O 1.21585 * 120.00044 * 184.21439 * 10 9 8 12 12 C 1.47644 * 119.99945 * 4.20975 * 10 9 8 13 13 C 1.40015 * 119.89696 * 313.65358 * 12 10 9 14 14 C 1.36315 * 120.11049 * 179.97438 * 13 12 10 15 15 C 1.40895 * 119.88589 * 0.29811 * 14 13 12 16 16 C 1.41117 * 120.09822 * 179.69855 * 15 14 13 17 17 H 1.07999 * 119.99292 * 145.45620 * 16 15 14 18 18 C 1.40223 * 120.00136 * 325.45769 * 16 15 14 19 19 N 1.30643 * 119.99922 * 171.10648 * 18 16 15 20 20 Si 1.86799 * 120.00308 * 351.10769 * 18 16 15 21 21 H 1.48500 * 109.46869 * 95.80120 * 20 18 16 22 22 H 1.48491 * 109.47228 * 215.80620 * 20 18 16 23 23 H 1.48508 * 109.46922 * 335.80451 * 20 18 16 24 24 C 1.40889 * 119.79436 * 359.42327 * 15 14 13 25 25 C 1.36315 * 119.89171 * 0.55435 * 24 15 14 26 26 C 1.46922 * 118.74060 * 53.85232 * 9 8 7 27 27 C 1.53039 * 109.44722 * 180.02562 * 5 3 2 28 28 H 1.08999 * 109.50464 * 58.66953 * 27 5 3 29 29 C 1.52999 * 109.49769 * 298.56891 * 27 5 3 30 30 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47303 * 300.00855 * 1 2 3 32 32 H 1.09005 * 109.46957 * 60.00425 * 1 2 3 33 33 H 1.08997 * 109.49839 * 61.42434 * 7 5 3 34 34 H 1.08998 * 109.50416 * 301.32385 * 7 5 3 35 35 H 1.08998 * 109.59160 * 185.57709 * 8 7 5 36 36 H 1.09005 * 109.69848 * 65.22624 * 8 7 5 37 37 H 1.07996 * 119.94531 * 359.97438 * 13 12 10 38 38 H 1.07999 * 120.05926 * 180.02562 * 14 13 12 39 39 H 0.96999 * 120.00378 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.04908 * 180.29585 * 24 15 14 41 41 H 1.07995 * 119.94259 * 179.76534 * 25 24 15 42 42 H 1.09001 * 109.58720 * 65.93108 * 26 9 8 43 43 H 1.08997 * 109.59003 * 186.35952 * 26 9 8 44 44 H 1.09001 * 109.47021 * 59.99990 * 29 27 5 45 45 H 1.09002 * 109.47602 * 180.02562 * 29 27 5 46 46 H 1.09002 * 109.47445 * 300.00007 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9555 0.7805 0.8907 7 6 4.1138 0.5807 -1.2486 8 6 5.6446 0.6328 -1.2274 9 7 6.0682 2.0320 -1.0800 10 6 6.9350 2.5826 -1.9529 11 8 7.3371 3.7165 -1.7770 12 6 7.3963 1.8089 -3.1227 13 6 7.8157 0.4829 -2.9611 14 6 8.2420 -0.2356 -4.0382 15 6 8.2659 0.3603 -5.3147 16 6 8.7124 -0.3773 -6.4318 17 1 8.2614 -0.2169 -7.4000 18 6 9.7413 -1.3185 -6.2848 19 7 10.0370 -2.1225 -7.2712 20 14 10.6893 -1.4229 -4.6787 21 1 10.1001 -2.4849 -3.8242 22 1 12.1102 -1.7475 -4.9627 23 1 10.6112 -0.1190 -3.9721 24 6 7.8373 1.6930 -5.4733 25 6 7.4123 2.4034 -4.3903 26 6 5.5336 2.8176 0.0406 27 6 3.9996 2.7426 0.0011 28 1 3.5900 3.2427 0.8787 29 6 3.4832 3.4280 -1.2656 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.7448 1.0898 -2.1389 34 1 3.7853 -0.4586 -1.2608 35 1 6.0371 0.2286 -2.1605 36 1 6.0207 0.0469 -0.3886 37 1 7.8016 0.0286 -1.9814 38 1 8.5650 -1.2585 -3.9127 39 1 10.7490 -2.7734 -7.1697 40 1 7.8494 2.1524 -6.4507 41 1 7.0872 3.4262 -4.5103 42 1 5.8986 2.4068 0.9819 43 1 5.8526 3.8554 -0.0557 44 1 2.3950 3.3707 -1.2918 45 1 3.7924 4.4732 -1.2651 46 1 3.8946 2.9283 -2.1426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276656283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:24 Heat of formation + Delta-G solvation = -98.944242 kcal Electronic energy + Delta-G solvation = -28938.386769 eV Core-core repulsion = 24985.805792 eV Total energy + Delta-G solvation = -3952.580978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16800 -39.88852 -38.03837 -37.16994 -36.49076 -33.92177 -33.36027 -31.98130 -30.66906 -30.08101 -28.48453 -27.15494 -26.52375 -25.10117 -23.18623 -22.14488 -21.66354 -21.06915 -19.86836 -18.67324 -17.81105 -17.62931 -17.14789 -16.78915 -16.31474 -15.86825 -15.38370 -15.25187 -14.75254 -14.20229 -14.10981 -14.03481 -13.82491 -13.71324 -13.42304 -12.95555 -12.82730 -12.61913 -12.50570 -12.43308 -12.34081 -12.08956 -11.91823 -11.75166 -11.53599 -11.25714 -11.02683 -10.96781 -10.87262 -10.70306 -10.58625 -10.38475 -10.28257 -10.18996 -9.83009 -9.34401 -9.15530 -8.42130 -7.93127 -7.70208 -7.11509 -4.71258 1.97686 2.07305 2.46902 2.57683 2.96437 3.11097 3.20884 3.27262 3.48754 3.84670 4.28051 4.38416 4.50618 4.56111 4.82211 4.87724 4.90053 4.95771 5.08890 5.19345 5.21114 5.23947 5.39829 5.45701 5.52622 5.65334 5.72745 5.77379 5.86088 5.91393 5.92522 5.97202 6.02504 6.08304 6.23700 6.36994 6.43695 6.60087 6.65176 6.78100 6.96156 7.20248 7.30416 7.46335 7.53597 7.65846 7.82258 7.91109 8.13826 8.42944 8.57133 8.74327 9.89055 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.003191 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.164453 B = 8772.526116 C = 9517.586381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.502 6.502 5 C -0.075 4.075 6 H 0.109 0.891 7 C -0.129 4.129 8 C 0.097 3.903 9 N -0.616 5.616 10 C 0.580 3.420 11 O -0.558 6.558 12 C -0.269 4.269 13 C -0.049 4.049 14 C -0.236 4.236 15 C 0.105 3.895 16 C -0.432 4.432 17 H 0.095 0.905 18 C 0.081 3.919 19 N -0.801 5.801 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.236 1.236 24 C -0.211 4.211 25 C -0.028 4.028 26 C 0.118 3.882 27 C -0.087 4.087 28 H 0.085 0.915 29 C -0.156 4.156 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.289 0.711 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 0.234 14.203 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.389 6.389 5 C -0.094 4.094 6 H 0.127 0.873 7 C -0.167 4.167 8 C -0.026 4.026 9 N -0.349 5.349 10 C 0.374 3.626 11 O -0.438 6.438 12 C -0.273 4.273 13 C -0.068 4.068 14 C -0.255 4.255 15 C 0.102 3.898 16 C -0.460 4.460 17 H 0.113 0.887 18 C -0.139 4.139 19 N -0.424 5.424 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.217 1.217 23 H -0.159 1.159 24 C -0.230 4.230 25 C -0.047 4.047 26 C -0.005 4.005 27 C -0.106 4.106 28 H 0.104 0.896 29 C -0.213 4.213 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.894 0.928 14.111 19.137 hybrid contribution 0.150 -0.345 0.641 0.743 sum -12.744 0.582 14.752 19.503 Atomic orbital electron populations 1.23258 0.76496 1.03671 1.02468 1.86525 1.23298 1.33610 1.84023 1.23880 0.92075 0.81206 0.71906 1.90617 1.67222 1.36153 1.44951 1.21170 0.86706 0.99338 1.02180 0.87309 1.22014 0.96742 1.01433 0.96508 1.22147 0.93041 0.82698 1.04703 1.48010 1.45968 1.12464 1.28508 1.18663 0.76805 0.85630 0.81517 1.90673 1.57573 1.19998 1.75522 1.18864 1.19646 0.95853 0.92959 1.20445 0.96653 0.92454 0.97243 1.20693 1.11537 0.99270 0.94020 1.17867 0.88572 0.91139 0.92242 1.19685 1.15071 1.14400 0.96862 0.88716 1.26268 0.96952 0.92156 0.98538 1.69547 1.25728 1.14069 1.33071 0.86315 0.77352 0.81494 0.81282 1.19442 1.21685 1.15868 1.20764 1.10206 0.94469 0.97590 1.20335 0.95387 0.97517 0.91498 1.21635 0.91255 0.98469 0.89111 1.21447 0.95751 0.92702 1.00730 0.89625 1.22022 1.02215 1.00333 0.96727 0.88115 0.92038 0.91879 0.90210 0.89431 0.86451 0.91535 0.88056 0.87994 0.90028 0.87568 0.88186 0.91839 0.88518 0.90918 0.92572 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.58 10.44 -39.26 -0.41 -3.99 16 3 C 0.47 5.18 6.97 36.01 0.25 5.43 16 4 O -0.50 -6.67 13.50 -18.74 -0.25 -6.92 16 5 C -0.07 -0.74 2.37 -91.73 -0.22 -0.96 16 6 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 7 C -0.13 -1.37 4.96 -26.61 -0.13 -1.50 16 8 C 0.10 1.18 5.20 -3.71 -0.02 1.17 16 9 N -0.62 -9.04 2.40 -173.68 -0.42 -9.45 16 10 C 0.58 11.04 7.27 -12.42 -0.09 10.95 16 11 O -0.56 -12.25 16.42 5.29 0.09 -12.17 16 12 C -0.27 -5.44 5.19 -104.73 -0.54 -5.99 16 13 C -0.05 -0.96 7.24 -39.61 -0.29 -1.25 16 14 C -0.24 -5.14 6.73 -39.27 -0.26 -5.40 16 15 C 0.11 2.47 5.08 -106.80 -0.54 1.93 16 16 C -0.43 -10.90 9.60 -37.74 -0.36 -11.26 16 17 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.08 1.99 5.49 -17.31 -0.10 1.90 16 19 N -0.80 -20.13 13.92 55.56 0.77 -19.36 16 20 Si 0.91 19.46 24.45 -169.99 -4.16 15.30 16 21 H -0.27 -5.46 6.89 56.52 0.39 -5.07 16 22 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.24 -5.24 6.35 56.52 0.36 -4.88 16 24 C -0.21 -4.66 9.73 -39.27 -0.38 -5.05 16 25 C -0.03 -0.59 9.62 -39.61 -0.38 -0.98 16 26 C 0.12 1.46 5.86 -3.48 -0.02 1.44 16 27 C -0.09 -0.96 2.36 -90.27 -0.21 -1.18 16 28 H 0.09 0.88 8.07 -51.93 -0.42 0.47 16 29 C -0.16 -2.01 8.41 37.16 0.31 -1.70 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 33 H 0.08 0.97 6.33 -51.93 -0.33 0.64 16 34 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.12 1.66 4.25 -51.93 -0.22 1.44 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.69 6.61 -52.49 -0.35 1.34 16 38 H 0.10 2.18 4.72 -52.49 -0.25 1.93 16 39 H 0.29 6.56 8.29 -40.82 -0.34 6.22 16 40 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.36 7.03 -51.93 -0.36 1.00 16 44 H 0.07 0.97 5.64 -51.93 -0.29 0.68 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.84 5.97 -51.93 -0.31 0.53 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -29.22 360.24 -7.23 -36.45 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.37 Total: 5.82 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.92 Total: -11.11 kcal Atomic # 7 Polarization: -29.17 SS G_CDS: 0.36 Total: -28.81 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.58 Total: -23.08 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.16 Total: 15.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.22 -7.23 -36.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276656283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.490 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds