Wall clock time and date at job start Tue Mar 31 2020 17:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99799 * 2 1 4 4 O 1.20820 * 120.00236 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99757 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.45633 * 300.02112 * 5 3 2 7 7 C 1.53037 * 109.46166 * 59.99237 * 5 3 2 8 8 C 1.53191 * 109.31390 * 181.36957 * 7 5 3 9 9 N 1.46927 * 108.77967 * 305.37226 * 8 7 5 10 10 C 1.34776 * 120.63014 * 233.58601 * 9 8 7 11 11 O 1.21585 * 120.00044 * 184.21439 * 10 9 8 12 12 C 1.47644 * 119.99945 * 4.20975 * 10 9 8 13 13 C 1.40015 * 119.89696 * 313.65358 * 12 10 9 14 14 C 1.36315 * 120.11049 * 179.97438 * 13 12 10 15 15 C 1.40895 * 119.88589 * 0.29811 * 14 13 12 16 16 C 1.41117 * 120.09822 * 179.69855 * 15 14 13 17 17 H 1.07999 * 119.99292 * 145.45620 * 16 15 14 18 18 C 1.40223 * 120.00136 * 325.45769 * 16 15 14 19 19 N 1.30643 * 119.99922 * 171.10648 * 18 16 15 20 20 Si 1.86799 * 120.00308 * 351.10769 * 18 16 15 21 21 H 1.48500 * 109.46869 * 95.80120 * 20 18 16 22 22 H 1.48491 * 109.47228 * 215.80620 * 20 18 16 23 23 H 1.48508 * 109.46922 * 335.80451 * 20 18 16 24 24 C 1.40889 * 119.79436 * 359.42327 * 15 14 13 25 25 C 1.36315 * 119.89171 * 0.55435 * 24 15 14 26 26 C 1.46922 * 118.74060 * 53.85232 * 9 8 7 27 27 C 1.53039 * 109.44722 * 180.02562 * 5 3 2 28 28 H 1.08999 * 109.50464 * 58.66953 * 27 5 3 29 29 C 1.52999 * 109.49769 * 298.56891 * 27 5 3 30 30 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47303 * 300.00855 * 1 2 3 32 32 H 1.09005 * 109.46957 * 60.00425 * 1 2 3 33 33 H 1.08997 * 109.49839 * 61.42434 * 7 5 3 34 34 H 1.08998 * 109.50416 * 301.32385 * 7 5 3 35 35 H 1.08998 * 109.59160 * 185.57709 * 8 7 5 36 36 H 1.09005 * 109.69848 * 65.22624 * 8 7 5 37 37 H 1.07996 * 119.94531 * 359.97438 * 13 12 10 38 38 H 1.07999 * 120.05926 * 180.02562 * 14 13 12 39 39 H 0.96999 * 120.00378 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.04908 * 180.29585 * 24 15 14 41 41 H 1.07995 * 119.94259 * 179.76534 * 25 24 15 42 42 H 1.09001 * 109.58720 * 65.93108 * 26 9 8 43 43 H 1.08997 * 109.59003 * 186.35952 * 26 9 8 44 44 H 1.09001 * 109.47021 * 59.99990 * 29 27 5 45 45 H 1.09002 * 109.47602 * 180.02562 * 29 27 5 46 46 H 1.09002 * 109.47445 * 300.00007 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9555 0.7805 0.8907 7 6 4.1138 0.5807 -1.2486 8 6 5.6446 0.6328 -1.2274 9 7 6.0682 2.0320 -1.0800 10 6 6.9350 2.5826 -1.9529 11 8 7.3371 3.7165 -1.7770 12 6 7.3963 1.8089 -3.1227 13 6 7.8157 0.4829 -2.9611 14 6 8.2420 -0.2356 -4.0382 15 6 8.2659 0.3603 -5.3147 16 6 8.7124 -0.3773 -6.4318 17 1 8.2614 -0.2169 -7.4000 18 6 9.7413 -1.3185 -6.2848 19 7 10.0370 -2.1225 -7.2712 20 14 10.6893 -1.4229 -4.6787 21 1 10.1001 -2.4849 -3.8242 22 1 12.1102 -1.7475 -4.9627 23 1 10.6112 -0.1190 -3.9721 24 6 7.8373 1.6930 -5.4733 25 6 7.4123 2.4034 -4.3903 26 6 5.5336 2.8176 0.0406 27 6 3.9996 2.7426 0.0011 28 1 3.5900 3.2427 0.8787 29 6 3.4832 3.4280 -1.2656 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.7448 1.0898 -2.1389 34 1 3.7853 -0.4586 -1.2608 35 1 6.0371 0.2286 -2.1605 36 1 6.0207 0.0469 -0.3886 37 1 7.8016 0.0286 -1.9814 38 1 8.5650 -1.2585 -3.9127 39 1 10.7490 -2.7734 -7.1697 40 1 7.8494 2.1524 -6.4507 41 1 7.0872 3.4262 -4.5103 42 1 5.8986 2.4068 0.9819 43 1 5.8526 3.8554 -0.0557 44 1 2.3950 3.3707 -1.2918 45 1 3.7924 4.4732 -1.2651 46 1 3.8946 2.9283 -2.1426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276656283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:23 Heat of formation + Delta-G solvation = -114.778616 kcal Electronic energy + Delta-G solvation = -28939.073399 eV Core-core repulsion = 24985.805792 eV Total energy + Delta-G solvation = -3953.267608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09636 -41.12875 -39.45305 -38.51761 -37.42825 -35.63900 -34.61655 -33.00813 -32.31652 -31.74734 -29.25034 -28.41756 -27.60585 -26.45789 -24.23040 -23.61667 -23.02774 -22.35036 -21.17129 -19.69452 -19.45154 -18.68293 -18.36990 -17.74942 -17.39199 -17.15613 -16.82671 -16.41295 -15.93176 -15.63977 -15.45081 -15.31026 -14.93211 -14.75234 -14.60181 -14.35697 -14.26310 -14.07339 -13.92457 -13.69802 -13.56035 -13.19615 -12.90996 -12.73509 -12.72511 -12.67762 -12.40429 -12.18529 -12.12278 -11.88185 -11.75579 -11.59096 -11.58108 -11.57060 -11.24819 -11.05231 -10.67675 -9.65990 -9.59833 -9.41001 -8.92082 -6.59529 0.39242 0.85420 1.15275 1.27573 1.41995 1.52058 1.73562 1.85488 2.11385 2.14987 2.63478 3.39720 3.43247 3.64225 3.74394 3.84915 4.00450 4.14155 4.19509 4.22258 4.23946 4.31968 4.34026 4.40169 4.52214 4.64761 4.67385 4.72936 4.74083 4.75642 4.84703 4.87819 4.92660 4.93799 5.07399 5.08950 5.10833 5.20866 5.33116 5.48038 5.49658 5.57764 5.66347 5.78842 5.84178 6.15099 6.28649 6.45506 6.64013 6.72631 6.73289 7.29380 8.14624 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.003191 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.164453 B = 8772.526116 C = 9517.586381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.530 6.530 5 C -0.070 4.070 6 H 0.143 0.857 7 C -0.123 4.123 8 C 0.091 3.909 9 N -0.604 5.604 10 C 0.577 3.423 11 O -0.594 6.594 12 C -0.259 4.259 13 C -0.038 4.038 14 C -0.240 4.240 15 C 0.092 3.908 16 C -0.471 4.471 17 H 0.060 0.940 18 C 0.047 3.953 19 N -0.844 5.844 20 Si 0.961 3.039 21 H -0.244 1.244 22 H -0.283 1.283 23 H -0.248 1.248 24 C -0.221 4.221 25 C -0.037 4.037 26 C 0.118 3.882 27 C -0.080 4.080 28 H 0.100 0.900 29 C -0.152 4.152 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.297 0.703 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -0.974 18.356 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.420 6.420 5 C -0.088 4.088 6 H 0.161 0.839 7 C -0.161 4.161 8 C -0.030 4.030 9 N -0.336 5.336 10 C 0.370 3.630 11 O -0.476 6.476 12 C -0.263 4.263 13 C -0.056 4.056 14 C -0.259 4.259 15 C 0.089 3.911 16 C -0.500 4.500 17 H 0.078 0.922 18 C -0.169 4.169 19 N -0.469 5.469 20 Si 0.784 3.216 21 H -0.168 1.168 22 H -0.210 1.210 23 H -0.171 1.171 24 C -0.241 4.241 25 C -0.056 4.056 26 C -0.004 4.004 27 C -0.100 4.100 28 H 0.118 0.882 29 C -0.209 4.209 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.699 -0.322 18.280 22.845 hybrid contribution 0.142 0.190 -0.539 0.589 sum -13.556 -0.132 17.741 22.328 Atomic orbital electron populations 1.23511 0.75125 1.05558 1.02319 1.86509 1.24669 1.32861 1.83581 1.24056 0.92480 0.81131 0.71126 1.90617 1.67901 1.37099 1.46341 1.21174 0.86106 0.98379 1.03176 0.83897 1.21939 0.95507 1.02609 0.96021 1.22368 0.94108 0.81214 1.05338 1.48013 1.44156 1.13647 1.27792 1.18446 0.77701 0.85045 0.81850 1.90667 1.59249 1.21236 1.76434 1.19233 1.17529 0.96290 0.93212 1.20771 0.94642 0.91795 0.98432 1.20833 1.11491 0.99893 0.93702 1.17992 0.88816 0.91418 0.92833 1.19614 1.17200 1.16945 0.96198 0.92172 1.26913 0.97124 0.91551 1.01274 1.69580 1.27145 1.15440 1.34767 0.85545 0.76611 0.81316 0.78122 1.16813 1.21047 1.17131 1.20873 1.10547 0.94490 0.98174 1.20499 0.95335 0.97900 0.91827 1.21817 0.91842 0.97394 0.89358 1.21381 0.94763 0.93786 1.00025 0.88232 1.21958 1.01743 0.99892 0.97296 0.85268 0.91776 0.92519 0.92369 0.87245 0.88260 0.87664 0.84020 0.87174 0.89232 0.87655 0.87505 0.88341 0.90503 0.91542 0.93484 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.04 10.44 -51.41 -0.54 -6.57 16 3 C 0.47 9.02 6.97 71.24 0.50 9.51 16 4 O -0.53 -13.11 13.50 21.98 0.30 -12.81 16 5 C -0.07 -1.10 2.37 -11.51 -0.03 -1.12 16 6 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.12 -2.14 4.96 30.67 0.15 -1.99 16 8 C 0.09 1.82 5.20 86.36 0.45 2.27 16 9 N -0.60 -15.70 2.40 -821.68 -1.97 -17.67 16 10 C 0.58 20.75 7.27 86.73 0.63 21.38 16 11 O -0.59 -25.36 16.42 -3.98 -0.07 -25.42 16 12 C -0.26 -10.01 5.19 -19.93 -0.10 -10.12 16 13 C -0.04 -1.37 7.24 22.25 0.16 -1.21 16 14 C -0.24 -10.07 6.73 22.47 0.15 -9.92 16 15 C 0.09 4.41 5.08 -21.27 -0.11 4.31 16 16 C -0.47 -24.89 9.60 23.46 0.23 -24.66 16 17 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 18 C 0.05 2.37 5.49 85.35 0.47 2.84 16 19 N -0.84 -43.91 13.92 21.87 0.30 -43.60 16 20 Si 0.96 39.43 24.45 68.60 1.68 41.11 16 21 H -0.24 -8.96 6.89 99.48 0.69 -8.27 16 22 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.25 -10.52 6.35 99.48 0.63 -9.89 16 24 C -0.22 -10.04 9.73 22.47 0.22 -9.82 16 25 C -0.04 -1.53 9.62 22.25 0.21 -1.32 16 26 C 0.12 2.50 5.86 86.51 0.51 3.01 16 27 C -0.08 -1.54 2.36 -10.57 -0.02 -1.56 16 28 H 0.10 1.71 8.07 -2.39 -0.02 1.69 16 29 C -0.15 -3.77 8.41 71.98 0.61 -3.16 16 30 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 32 H 0.06 0.77 8.13 -2.38 -0.02 0.75 16 33 H 0.06 1.29 6.33 -2.39 -0.02 1.28 16 34 H 0.11 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.10 2.40 4.25 -2.39 -0.01 2.39 16 36 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.14 3.98 6.61 -2.91 -0.02 3.96 16 38 H 0.11 4.44 4.72 -2.91 -0.01 4.42 16 39 H 0.30 13.82 8.29 -92.71 -0.77 13.05 16 40 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 2.00 7.03 -2.39 -0.02 1.99 16 44 H 0.07 1.74 5.64 -2.39 -0.01 1.73 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 46 H 0.04 1.17 5.97 -2.39 -0.01 1.16 16 Total: -1.00 -66.36 360.24 5.82 -60.53 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.91 Total: 24.48 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 5.21 Total: -20.04 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -1.67 Total: -61.27 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.31 Total: -44.81 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.68 Total: 41.11 kcal Total: -66.36 5.82 -60.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276656283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.245 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds