Wall clock time and date at job start Tue Mar 31 2020 17:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34221 * 117.00409 * 2 1 4 4 O 1.20829 * 120.00020 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00469 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.44624 * 59.96093 * 5 3 2 7 7 C 1.53044 * 109.45775 * 299.99998 * 5 3 2 8 8 C 1.53190 * 109.31192 * 178.61177 * 7 5 3 9 9 N 1.46920 * 108.77352 * 54.63884 * 8 7 5 10 10 C 1.34771 * 120.63499 * 126.37213 * 9 8 7 11 11 O 1.21583 * 120.00781 * 185.48478 * 10 9 8 12 12 C 1.47650 * 119.99742 * 5.47855 * 10 9 8 13 13 C 1.40010 * 119.89686 * 213.30044 * 12 10 9 14 14 C 1.36315 * 120.10735 * 180.02562 * 13 12 10 15 15 C 1.40887 * 119.89276 * 359.97438 * 14 13 12 16 16 C 1.41115 * 120.10815 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00288 * 212.21624 * 16 15 14 18 18 C 1.40227 * 119.99269 * 32.21324 * 16 15 14 19 19 N 1.30649 * 120.00622 * 25.26159 * 18 16 15 20 20 Si 1.86800 * 119.99539 * 205.25937 * 18 16 15 21 21 H 1.48502 * 109.47359 * 59.99968 * 20 18 16 22 22 H 1.48496 * 109.47239 * 300.00100 * 20 18 16 23 23 H 1.48498 * 109.47153 * 179.97438 * 20 18 16 24 24 C 1.40888 * 119.79318 * 0.24688 * 15 14 13 25 25 C 1.36322 * 119.88935 * 359.52001 * 24 15 14 26 26 C 1.46932 * 118.73851 * 306.63583 * 9 8 7 27 27 C 1.52761 * 109.00266 * 53.31693 * 26 9 8 28 28 H 1.09001 * 109.38846 * 65.51432 * 27 26 9 29 29 C 1.53001 * 109.56246 * 185.55188 * 27 26 9 30 30 H 1.09002 * 109.46509 * 60.00148 * 1 2 3 31 31 H 1.09000 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47266 * 300.00249 * 1 2 3 33 33 H 1.09002 * 109.49533 * 58.65963 * 7 5 3 34 34 H 1.09000 * 109.49897 * 298.56778 * 7 5 3 35 35 H 1.08994 * 109.58427 * 294.84540 * 8 7 5 36 36 H 1.09008 * 109.70042 * 174.49343 * 8 7 5 37 37 H 1.08001 * 119.94370 * 359.97438 * 13 12 10 38 38 H 1.08003 * 120.05861 * 179.97438 * 14 13 12 39 39 H 0.97000 * 119.99395 * 5.96162 * 19 18 16 40 40 H 1.07998 * 120.05766 * 179.74049 * 24 15 14 41 41 H 1.08002 * 119.94512 * 180.20611 * 25 24 15 42 42 H 1.08995 * 109.58408 * 173.14547 * 26 9 8 43 43 H 1.08995 * 109.58856 * 293.57965 * 26 9 8 44 44 H 1.09003 * 109.47352 * 179.97438 * 29 27 26 45 45 H 1.09000 * 109.47413 * 299.96334 * 29 27 26 46 46 H 1.09003 * 109.47339 * 59.96504 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9561 0.7798 -0.8889 7 6 4.1128 0.5812 1.2506 8 6 5.6437 0.6329 1.2305 9 7 6.0676 2.0319 1.0827 10 6 6.9332 2.5831 1.9563 11 8 7.1995 3.7672 1.8833 12 6 7.5580 1.7491 3.0023 13 6 7.8531 2.3039 4.2535 14 6 8.4304 1.5379 5.2221 15 6 8.7297 0.1859 4.9627 16 6 9.3278 -0.6110 5.9620 17 1 10.0081 -1.4030 5.6858 18 6 9.0389 -0.3744 7.3136 19 7 7.9117 0.1935 7.6510 20 14 10.2656 -0.8714 8.6317 21 1 11.5484 -0.1572 8.4088 22 1 10.4970 -2.3367 8.5655 23 1 9.7271 -0.5148 9.9689 24 6 8.4352 -0.3667 3.7006 25 6 7.8534 0.4059 2.7398 26 6 5.5254 2.8203 -0.0323 27 6 4.0001 2.7424 -0.0012 28 1 3.6311 3.2320 0.9001 29 6 3.4261 3.4430 -1.2343 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.7840 -0.4580 1.2631 34 1 3.7432 1.0909 2.1404 35 1 6.0181 0.0470 0.3911 36 1 6.0374 0.2284 2.1630 37 1 7.6237 3.3405 4.4512 38 1 8.6581 1.9668 6.1868 39 1 7.2381 0.3728 6.9765 40 1 8.6666 -1.4015 3.4958 41 1 7.6242 -0.0176 1.7731 42 1 5.8390 3.8593 0.0685 43 1 5.8899 2.4163 -0.9768 44 1 2.3378 3.3861 -1.2109 45 1 3.7352 4.4882 -1.2352 46 1 3.7962 2.9538 -2.1354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276656285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:28 Heat of formation + Delta-G solvation = -107.365885 kcal Electronic energy + Delta-G solvation = -28563.723251 eV Core-core repulsion = 24610.777083 eV Total energy + Delta-G solvation = -3952.946168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10284 -39.79992 -37.92171 -37.12527 -36.45796 -34.26573 -33.46044 -32.18664 -30.06220 -29.77352 -28.39646 -26.89863 -26.40661 -25.01806 -22.80051 -22.08495 -21.40748 -21.16120 -20.12947 -18.93367 -18.16513 -17.79755 -17.01840 -16.69866 -16.27350 -15.82979 -14.98187 -14.79522 -14.58394 -14.29954 -14.19981 -14.11710 -13.83226 -13.54491 -13.26789 -12.86723 -12.75699 -12.59930 -12.46683 -12.31629 -12.27633 -12.02739 -11.81022 -11.65957 -11.46158 -11.19594 -11.14871 -11.02324 -10.95410 -10.79060 -10.56394 -10.49332 -10.23175 -9.88817 -9.72228 -9.22445 -9.01864 -8.37785 -7.93113 -7.71205 -7.40161 -4.69232 1.98467 2.16259 2.48126 2.75432 3.03823 3.09247 3.26596 3.35076 3.66570 3.87403 4.29244 4.42185 4.53049 4.57512 4.83084 4.88006 4.90789 4.99431 5.19366 5.21366 5.24375 5.27653 5.40060 5.46920 5.49077 5.63385 5.68575 5.79959 5.84284 5.95376 5.96754 6.01769 6.08811 6.11595 6.19732 6.36205 6.58952 6.72770 6.85174 6.87847 7.20273 7.39960 7.51444 7.54934 7.55954 7.62256 7.92832 7.98157 8.07563 8.50338 8.63387 8.85934 9.82839 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.002803 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.884492 B = 9986.294970 C =10943.705023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.502 6.502 5 C -0.074 4.074 6 H 0.109 0.891 7 C -0.128 4.128 8 C 0.096 3.904 9 N -0.621 5.621 10 C 0.578 3.422 11 O -0.565 6.565 12 C -0.285 4.285 13 C -0.023 4.023 14 C -0.223 4.223 15 C 0.111 3.889 16 C -0.507 4.507 17 H 0.082 0.918 18 C 0.038 3.962 19 N -0.778 5.778 20 Si 1.066 2.934 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.231 4.231 25 C -0.054 4.054 26 C 0.120 3.880 27 C -0.088 4.088 28 H 0.083 0.917 29 C -0.159 4.159 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.301 0.699 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 -3.306 -12.783 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.389 6.389 5 C -0.093 4.093 6 H 0.127 0.873 7 C -0.166 4.166 8 C -0.026 4.026 9 N -0.355 5.355 10 C 0.373 3.627 11 O -0.445 6.445 12 C -0.289 4.289 13 C -0.042 4.042 14 C -0.242 4.242 15 C 0.108 3.892 16 C -0.534 4.534 17 H 0.100 0.900 18 C -0.186 4.186 19 N -0.399 5.399 20 Si 0.888 3.112 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.250 4.250 25 C -0.072 4.072 26 C -0.003 4.003 27 C -0.108 4.108 28 H 0.101 0.899 29 C -0.217 4.217 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.299 -2.308 -11.164 15.364 hybrid contribution -0.695 -0.081 -1.803 1.934 sum -10.994 -2.389 -12.967 17.168 Atomic orbital electron populations 1.23260 0.76494 1.03673 1.02485 1.86522 1.23304 1.33607 1.84013 1.23890 0.92077 0.81192 0.71861 1.90597 1.67248 1.36078 1.44985 1.21205 0.86678 0.99301 1.02143 0.87268 1.22004 0.96934 1.01479 0.96203 1.22299 0.92755 0.82916 1.04659 1.47984 1.46107 1.12318 1.29052 1.18685 0.77149 0.86814 0.80051 1.90650 1.63800 1.16779 1.73305 1.18808 1.19057 0.94982 0.96054 1.20358 0.94371 0.97605 0.91857 1.20828 1.09540 0.94176 0.99639 1.17814 0.87598 0.91439 0.92388 1.20766 1.24100 1.15846 0.92685 0.89992 1.27176 0.98650 0.92532 1.00249 1.70392 1.04273 1.24488 1.40795 0.83621 0.75110 0.77409 0.75034 1.19748 1.19910 1.19663 1.20736 1.09468 0.98626 0.96166 1.20647 0.96683 0.92417 0.97489 1.21445 0.91210 0.98467 0.89193 1.21324 0.95912 0.92639 1.00917 0.89889 1.22056 1.03216 1.00423 0.95970 0.92019 0.88106 0.91876 0.89320 0.90721 0.91599 0.86170 0.88371 0.87668 0.88594 0.88264 0.87885 0.88573 0.91937 0.89984 0.92204 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.73 10.44 -39.23 -0.41 -4.14 16 3 C 0.47 5.45 6.96 36.01 0.25 5.71 16 4 O -0.50 -6.93 13.33 -18.75 -0.25 -7.18 16 5 C -0.07 -0.80 2.14 -91.73 -0.20 -0.99 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.13 -1.46 5.30 -26.61 -0.14 -1.60 16 8 C 0.10 1.27 4.74 -3.71 -0.02 1.25 16 9 N -0.62 -9.92 2.98 -174.22 -0.52 -10.43 16 10 C 0.58 11.87 7.40 -12.42 -0.09 11.78 16 11 O -0.57 -13.24 16.18 5.29 0.09 -13.16 16 12 C -0.28 -6.18 5.39 -104.73 -0.56 -6.74 16 13 C -0.02 -0.53 9.53 -39.61 -0.38 -0.91 16 14 C -0.22 -5.45 8.02 -39.27 -0.32 -5.77 16 15 C 0.11 2.72 5.13 -106.80 -0.55 2.17 16 16 C -0.51 -12.44 8.94 -37.74 -0.34 -12.78 16 17 H 0.08 1.94 7.96 -52.49 -0.42 1.52 16 18 C 0.04 0.90 4.89 -17.31 -0.08 0.81 16 19 N -0.78 -19.42 12.56 55.56 0.70 -18.73 16 20 Si 1.07 20.10 30.00 -169.99 -5.10 15.00 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 C -0.23 -5.09 9.73 -39.27 -0.38 -5.47 16 25 C -0.05 -1.08 7.28 -39.61 -0.29 -1.37 16 26 C 0.12 1.62 5.70 -3.93 -0.02 1.60 16 27 C -0.09 -1.07 2.04 -90.72 -0.19 -1.26 16 28 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 29 C -0.16 -1.70 8.86 37.16 0.33 -1.37 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.12 1.82 4.29 -51.92 -0.22 1.60 16 37 H 0.10 2.25 7.96 -52.49 -0.42 1.83 16 38 H 0.11 2.65 6.99 -52.48 -0.37 2.29 16 39 H 0.30 7.70 7.00 -40.82 -0.29 7.41 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.10 1.72 5.77 -52.49 -0.30 1.42 16 42 H 0.10 1.47 6.99 -51.93 -0.36 1.11 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.98 5.41 -51.93 -0.28 0.70 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -29.30 369.22 -8.35 -37.66 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.52 Total: 9.01 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.91 Total: -13.60 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: 0.18 Total: -29.16 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.57 Total: -24.48 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.10 Total: 15.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.30 -8.35 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276656285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.708 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds