Wall clock time and date at job start Tue Mar 31 2020 17:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34221 * 117.00409 * 2 1 4 4 O 1.20829 * 120.00020 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00469 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.44624 * 59.96093 * 5 3 2 7 7 C 1.53044 * 109.45775 * 299.99998 * 5 3 2 8 8 C 1.53190 * 109.31192 * 178.61177 * 7 5 3 9 9 N 1.46920 * 108.77352 * 54.63884 * 8 7 5 10 10 C 1.34771 * 120.63499 * 126.37213 * 9 8 7 11 11 O 1.21583 * 120.00781 * 185.48478 * 10 9 8 12 12 C 1.47650 * 119.99742 * 5.47855 * 10 9 8 13 13 C 1.40010 * 119.89686 * 213.30044 * 12 10 9 14 14 C 1.36315 * 120.10735 * 180.02562 * 13 12 10 15 15 C 1.40887 * 119.89276 * 359.97438 * 14 13 12 16 16 C 1.41115 * 120.10815 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00288 * 212.21624 * 16 15 14 18 18 C 1.40227 * 119.99269 * 32.21324 * 16 15 14 19 19 N 1.30649 * 120.00622 * 25.26159 * 18 16 15 20 20 Si 1.86800 * 119.99539 * 205.25937 * 18 16 15 21 21 H 1.48502 * 109.47359 * 59.99968 * 20 18 16 22 22 H 1.48496 * 109.47239 * 300.00100 * 20 18 16 23 23 H 1.48498 * 109.47153 * 179.97438 * 20 18 16 24 24 C 1.40888 * 119.79318 * 0.24688 * 15 14 13 25 25 C 1.36322 * 119.88935 * 359.52001 * 24 15 14 26 26 C 1.46932 * 118.73851 * 306.63583 * 9 8 7 27 27 C 1.52761 * 109.00266 * 53.31693 * 26 9 8 28 28 H 1.09001 * 109.38846 * 65.51432 * 27 26 9 29 29 C 1.53001 * 109.56246 * 185.55188 * 27 26 9 30 30 H 1.09002 * 109.46509 * 60.00148 * 1 2 3 31 31 H 1.09000 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47266 * 300.00249 * 1 2 3 33 33 H 1.09002 * 109.49533 * 58.65963 * 7 5 3 34 34 H 1.09000 * 109.49897 * 298.56778 * 7 5 3 35 35 H 1.08994 * 109.58427 * 294.84540 * 8 7 5 36 36 H 1.09008 * 109.70042 * 174.49343 * 8 7 5 37 37 H 1.08001 * 119.94370 * 359.97438 * 13 12 10 38 38 H 1.08003 * 120.05861 * 179.97438 * 14 13 12 39 39 H 0.97000 * 119.99395 * 5.96162 * 19 18 16 40 40 H 1.07998 * 120.05766 * 179.74049 * 24 15 14 41 41 H 1.08002 * 119.94512 * 180.20611 * 25 24 15 42 42 H 1.08995 * 109.58408 * 173.14547 * 26 9 8 43 43 H 1.08995 * 109.58856 * 293.57965 * 26 9 8 44 44 H 1.09003 * 109.47352 * 179.97438 * 29 27 26 45 45 H 1.09000 * 109.47413 * 299.96334 * 29 27 26 46 46 H 1.09003 * 109.47339 * 59.96504 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9561 0.7798 -0.8889 7 6 4.1128 0.5812 1.2506 8 6 5.6437 0.6329 1.2305 9 7 6.0676 2.0319 1.0827 10 6 6.9332 2.5831 1.9563 11 8 7.1995 3.7672 1.8833 12 6 7.5580 1.7491 3.0023 13 6 7.8531 2.3039 4.2535 14 6 8.4304 1.5379 5.2221 15 6 8.7297 0.1859 4.9627 16 6 9.3278 -0.6110 5.9620 17 1 10.0081 -1.4030 5.6858 18 6 9.0389 -0.3744 7.3136 19 7 7.9117 0.1935 7.6510 20 14 10.2656 -0.8714 8.6317 21 1 11.5484 -0.1572 8.4088 22 1 10.4970 -2.3367 8.5655 23 1 9.7271 -0.5148 9.9689 24 6 8.4352 -0.3667 3.7006 25 6 7.8534 0.4059 2.7398 26 6 5.5254 2.8203 -0.0323 27 6 4.0001 2.7424 -0.0012 28 1 3.6311 3.2320 0.9001 29 6 3.4261 3.4430 -1.2343 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.7840 -0.4580 1.2631 34 1 3.7432 1.0909 2.1404 35 1 6.0181 0.0470 0.3911 36 1 6.0374 0.2284 2.1630 37 1 7.6237 3.3405 4.4512 38 1 8.6581 1.9668 6.1868 39 1 7.2381 0.3728 6.9765 40 1 8.6666 -1.4015 3.4958 41 1 7.6242 -0.0176 1.7731 42 1 5.8390 3.8593 0.0685 43 1 5.8899 2.4163 -0.9768 44 1 2.3378 3.3861 -1.2109 45 1 3.7352 4.4882 -1.2352 46 1 3.7962 2.9538 -2.1354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276656285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:27 Heat of formation + Delta-G solvation = -122.402425 kcal Electronic energy + Delta-G solvation = -28564.375284 eV Core-core repulsion = 24610.777083 eV Total energy + Delta-G solvation = -3953.598201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07989 -41.15730 -39.40503 -38.52904 -37.48586 -35.95468 -34.76541 -33.22276 -31.85931 -31.47992 -29.19636 -28.20130 -27.49505 -26.47846 -24.05780 -23.35978 -22.86393 -22.60457 -21.22278 -20.31562 -19.92472 -18.73288 -18.15469 -17.77991 -17.31713 -17.21520 -16.57247 -16.31267 -15.76119 -15.68588 -15.41494 -15.25825 -15.14620 -14.63270 -14.48061 -14.37274 -14.18670 -14.07072 -13.90488 -13.39849 -13.32558 -13.14936 -13.00789 -12.84317 -12.78311 -12.72789 -12.51810 -12.09744 -11.99244 -11.89608 -11.73910 -11.60099 -11.55689 -11.50983 -11.21919 -10.95083 -10.67695 -9.79133 -9.67345 -9.47308 -9.24024 -6.56919 0.40698 0.94026 1.10228 1.51523 1.55791 1.69814 1.80768 1.93512 2.12710 2.31266 2.68685 3.36399 3.44390 3.59996 3.68927 3.82107 3.96488 4.11553 4.18922 4.24052 4.25411 4.29891 4.31738 4.37605 4.48116 4.58881 4.65218 4.67713 4.71165 4.76724 4.81273 4.88560 4.95102 5.01753 5.04421 5.06228 5.20832 5.23996 5.36647 5.49459 5.57107 5.60703 5.69039 5.75967 5.83509 6.14260 6.24562 6.43797 6.66440 6.69387 6.82672 7.27963 7.95519 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.002803 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.884492 B = 9986.294970 C =10943.705023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.530 6.530 5 C -0.069 4.069 6 H 0.145 0.855 7 C -0.121 4.121 8 C 0.091 3.909 9 N -0.611 5.611 10 C 0.573 3.427 11 O -0.603 6.603 12 C -0.284 4.284 13 C -0.037 4.037 14 C -0.238 4.238 15 C 0.089 3.911 16 C -0.538 4.538 17 H 0.087 0.913 18 C 0.005 3.995 19 N -0.803 5.803 20 Si 1.115 2.885 21 H -0.265 1.265 22 H -0.251 1.251 23 H -0.274 1.274 24 C -0.237 4.237 25 C -0.036 4.036 26 C 0.119 3.881 27 C -0.082 4.082 28 H 0.049 0.951 29 C -0.153 4.153 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.285 0.715 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.757 -5.759 -15.464 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.419 6.419 5 C -0.088 4.088 6 H 0.162 0.838 7 C -0.159 4.159 8 C -0.031 4.031 9 N -0.343 5.343 10 C 0.367 3.633 11 O -0.487 6.487 12 C -0.288 4.288 13 C -0.057 4.057 14 C -0.258 4.258 15 C 0.086 3.914 16 C -0.565 4.565 17 H 0.105 0.895 18 C -0.213 4.213 19 N -0.425 5.425 20 Si 0.931 3.069 21 H -0.190 1.190 22 H -0.175 1.175 23 H -0.199 1.199 24 C -0.256 4.256 25 C -0.054 4.054 26 C -0.003 4.003 27 C -0.102 4.102 28 H 0.068 0.932 29 C -0.210 4.210 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.136 0.864 41 H 0.165 0.835 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.655 -4.805 -13.890 18.153 hybrid contribution -0.758 0.730 -1.149 1.558 sum -11.413 -4.075 -15.039 19.314 Atomic orbital electron populations 1.23530 0.75015 1.05661 1.02340 1.86504 1.24758 1.32676 1.83540 1.24007 0.92393 0.81190 0.71154 1.90602 1.67906 1.37068 1.46333 1.21195 0.86305 0.98166 1.03126 0.83782 1.21930 0.95562 1.02833 0.95579 1.22517 0.93950 0.81287 1.05316 1.48005 1.44275 1.13712 1.28263 1.18542 0.78045 0.86149 0.80578 1.90633 1.65438 1.18168 1.74447 1.19105 1.18104 0.96059 0.95577 1.20441 0.94944 0.97376 0.92926 1.20720 1.11028 0.94846 0.99163 1.18132 0.88012 0.91367 0.93909 1.20969 1.25284 1.16764 0.93438 0.89531 1.28514 0.99141 0.91341 1.02325 1.70505 1.04993 1.26873 1.40124 0.83030 0.73068 0.78453 0.72302 1.19011 1.17465 1.19921 1.21000 1.09275 0.99782 0.95558 1.20974 0.94446 0.91183 0.98798 1.21625 0.91953 0.97232 0.89446 1.21198 0.94798 0.93912 1.00293 0.93195 1.21986 1.02380 1.00493 0.96141 0.91669 0.85084 0.92610 0.86708 0.93260 0.87388 0.88114 0.89153 0.89697 0.90339 0.86360 0.83509 0.90867 0.88292 0.91118 0.92436 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.42 10.44 -51.33 -0.54 -6.96 16 3 C 0.47 9.87 6.96 71.24 0.50 10.37 16 4 O -0.53 -14.09 13.33 21.96 0.29 -13.80 16 5 C -0.07 -1.26 2.14 -11.51 -0.02 -1.28 16 6 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 7 C -0.12 -2.40 5.30 30.67 0.16 -2.23 16 8 C 0.09 2.05 4.74 86.36 0.41 2.46 16 9 N -0.61 -18.19 2.98 -823.38 -2.45 -20.64 16 10 C 0.57 23.29 7.40 86.73 0.64 23.93 16 11 O -0.60 -28.76 16.18 -3.98 -0.06 -28.83 16 12 C -0.28 -12.30 5.39 -19.93 -0.11 -12.41 16 13 C -0.04 -1.83 9.53 22.25 0.21 -1.62 16 14 C -0.24 -12.24 8.02 22.47 0.18 -12.06 16 15 C 0.09 4.46 5.13 -21.28 -0.11 4.35 16 16 C -0.54 -26.84 8.94 23.46 0.21 -26.63 16 17 H 0.09 4.11 7.96 -2.91 -0.02 4.09 16 18 C 0.01 0.25 4.89 85.35 0.42 0.66 16 19 N -0.80 -41.74 12.56 21.87 0.27 -41.47 16 20 Si 1.11 40.58 30.00 68.60 2.06 42.64 16 21 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 22 H -0.25 -8.15 7.11 99.48 0.71 -7.44 16 23 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 24 C -0.24 -10.20 9.73 22.47 0.22 -9.98 16 25 C -0.04 -1.36 7.28 22.25 0.16 -1.20 16 26 C 0.12 2.94 5.70 86.22 0.49 3.43 16 27 C -0.08 -1.85 2.04 -10.86 -0.02 -1.87 16 28 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 29 C -0.15 -2.93 8.86 71.98 0.64 -2.29 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.11 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.66 8.03 -2.39 -0.02 1.64 16 36 H 0.10 2.74 4.29 -2.38 -0.01 2.73 16 37 H 0.09 4.42 7.96 -2.91 -0.02 4.40 16 38 H 0.08 4.60 6.99 -2.91 -0.02 4.58 16 39 H 0.28 15.42 7.00 -92.71 -0.65 14.77 16 40 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.15 4.27 5.77 -2.91 -0.02 4.25 16 42 H 0.07 2.19 6.99 -2.39 -0.02 2.17 16 43 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 1.58 5.41 -2.39 -0.01 1.57 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.83 369.22 5.86 -61.97 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 1.11 Total: 31.90 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 5.17 Total: -24.83 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -2.18 Total: -62.10 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.31 Total: -49.58 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.06 Total: 42.64 kcal Total: -67.83 5.86 -61.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276656285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.432 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds