Wall clock time and date at job start Tue Mar 31 2020 17:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.57916 * 2 1 4 4 C 1.53093 * 109.52236 * 120.15456 * 2 1 3 5 5 O 1.42910 * 109.41466 * 177.51203 * 4 2 1 6 6 C 1.42901 * 114.09913 * 298.84369 * 5 4 2 7 7 C 1.53098 * 109.48758 * 61.11060 * 6 5 4 8 8 C 1.53177 * 109.52296 * 239.83989 * 2 1 3 9 9 H 1.09005 * 109.54457 * 303.07125 * 8 2 1 10 10 N 1.46494 * 109.54317 * 63.24753 * 8 2 1 11 11 C 1.34777 * 120.00176 * 204.82612 * 10 8 2 12 12 O 1.21724 * 120.00227 * 359.97438 * 11 10 8 13 13 C 1.46254 * 120.00339 * 179.97438 * 11 10 8 14 14 C 1.35019 * 120.00472 * 179.97438 * 13 11 10 15 15 C 1.46955 * 120.00396 * 179.97438 * 14 13 11 16 16 C 1.40026 * 120.10309 * 180.02562 * 15 14 13 17 17 C 1.37596 * 119.89983 * 179.97438 * 16 15 14 18 18 C 1.39183 * 120.09847 * 0.02562 * 17 16 15 19 19 O 1.35573 * 119.89238 * 179.97438 * 18 17 16 20 20 C 1.34773 * 117.00439 * 354.44777 * 19 18 17 21 21 H 1.07997 * 120.00068 * 5.07196 * 20 19 18 22 22 C 1.38723 * 120.00288 * 185.06906 * 20 19 18 23 23 N 1.31501 * 120.00128 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99794 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47305 * 89.99784 * 24 22 20 26 26 H 1.48499 * 109.47275 * 210.00388 * 24 22 20 27 27 H 1.48506 * 109.47334 * 330.00003 * 24 22 20 28 28 C 1.39168 * 120.20525 * 359.97438 * 18 17 16 29 29 C 1.37603 * 120.10443 * 0.02562 * 28 18 17 30 30 H 1.08995 * 109.47379 * 180.16013 * 1 2 3 31 31 H 1.09005 * 109.47258 * 300.15832 * 1 2 3 32 32 H 1.08998 * 109.47451 * 60.16101 * 1 2 3 33 33 H 1.08995 * 109.48291 * 297.49635 * 4 2 1 34 34 H 1.09004 * 109.48374 * 57.52458 * 4 2 1 35 35 H 1.08994 * 109.47751 * 181.14228 * 6 5 4 36 36 H 1.08998 * 109.48008 * 301.17264 * 6 5 4 37 37 H 1.08998 * 109.60231 * 182.57815 * 7 6 5 38 38 H 1.08997 * 109.45770 * 62.38367 * 7 6 5 39 39 H 0.96999 * 120.00275 * 24.82024 * 10 8 2 40 40 H 1.08007 * 119.99584 * 359.97438 * 13 11 10 41 41 H 1.07998 * 119.99671 * 0.02562 * 14 13 11 42 42 H 1.08003 * 120.04713 * 359.96102 * 16 15 14 43 43 H 1.07996 * 119.95396 * 179.72789 * 17 16 15 44 44 H 0.97000 * 119.99934 * 179.97438 * 23 22 20 45 45 H 1.08002 * 119.95345 * 180.02562 * 28 18 17 46 46 H 1.07992 * 120.05555 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 3.4694 -0.7743 1.2163 6 6 4.0043 -1.4816 0.0958 7 6 3.5715 -0.7892 -1.1993 8 6 2.0418 -0.7253 -1.2483 9 1 1.6354 -1.7364 -1.2749 10 7 1.6199 0.0042 -2.4465 11 6 1.4973 -0.6440 -3.6219 12 8 1.7376 -1.8355 -3.6878 13 6 1.0755 0.0841 -4.8181 14 6 0.9532 -0.5650 -5.9956 15 6 0.5288 0.1665 -7.1974 16 6 0.4008 -0.5048 -8.4196 17 6 0.0026 0.1842 -9.5421 18 6 -0.2721 1.5464 -9.4642 19 8 -0.6636 2.2212 -10.5730 20 6 -0.6556 1.5423 -11.7372 21 1 -0.4257 0.4871 -11.7455 22 6 -0.9426 2.1989 -12.9250 23 7 -0.9352 1.5364 -14.0610 24 14 -1.3410 4.0239 -12.9107 25 1 -0.0884 4.8053 -13.0705 26 1 -2.2661 4.3374 -14.0292 27 1 -1.9853 4.3799 -11.6209 28 6 -0.1463 2.2178 -8.2517 29 6 0.2513 1.5370 -7.1239 30 1 -0.3634 -1.0276 0.0029 31 1 -0.3634 0.5163 0.8886 32 1 -0.3634 0.5113 -0.8914 33 1 1.7159 -0.1885 2.1389 34 1 1.6430 -1.7392 1.2679 35 1 5.0925 -1.4904 0.1573 36 1 3.6315 -2.5059 0.1008 37 1 3.9402 -1.3529 -2.0562 38 1 3.9792 0.2214 -1.2244 39 1 1.4286 0.9537 -2.3941 40 1 0.8619 1.1413 -4.7595 41 1 1.1664 -1.6221 -6.0541 42 1 0.6144 -1.5617 -8.4810 43 1 -0.0922 -0.3318 -10.4861 44 1 -1.1363 1.9955 -14.8915 45 1 -0.3609 3.2748 -8.1958 46 1 0.3483 2.0587 -6.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278547642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:34 Heat of formation + Delta-G solvation = -80.113146 kcal Electronic energy + Delta-G solvation = -26717.010862 eV Core-core repulsion = 22765.246461 eV Total energy + Delta-G solvation = -3951.764400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49817 -39.41619 -38.94675 -37.09158 -35.76195 -33.29435 -33.17920 -32.50069 -31.66426 -30.55083 -28.52015 -27.20659 -25.85297 -25.07613 -22.96029 -22.71463 -22.29203 -20.78879 -20.72050 -19.28047 -18.10104 -17.50287 -17.14663 -16.88899 -16.54084 -15.65927 -15.26815 -15.13514 -14.99866 -14.75025 -14.31422 -14.18287 -14.06715 -14.00857 -13.86794 -13.47669 -13.18240 -12.86817 -12.64468 -12.51841 -12.43310 -12.42098 -11.92659 -11.83706 -11.76483 -11.52314 -11.22363 -11.19866 -11.03759 -10.79354 -10.73649 -10.29820 -10.18040 -9.73552 -9.68273 -9.56823 -9.20100 -8.93382 -8.49270 -7.26631 -6.62078 -4.25835 0.95875 2.01281 2.44629 3.07315 3.10450 3.14374 3.27459 3.47543 3.48087 4.07232 4.13857 4.35111 4.39504 4.42437 4.61017 4.68896 4.77484 4.84573 4.92246 4.97771 5.04997 5.13094 5.14602 5.24543 5.27037 5.39236 5.40590 5.45403 5.51438 5.57419 5.59395 5.67804 5.76997 5.89328 5.92111 5.99872 6.26284 6.30064 6.42283 6.50724 6.65161 6.76534 6.90571 7.06709 7.13866 7.39704 7.46761 7.60919 7.82279 8.26053 8.71137 9.31268 10.44120 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.001738 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.219712 B =16110.102789 C =16495.763068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 H 0.084 0.916 4 C 0.069 3.931 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.168 4.168 8 C 0.151 3.849 9 H 0.088 0.912 10 N -0.727 5.727 11 C 0.557 3.443 12 O -0.557 6.557 13 C -0.280 4.280 14 C 0.037 3.963 15 C -0.190 4.190 16 C -0.037 4.037 17 C -0.230 4.230 18 C 0.173 3.827 19 O -0.202 6.202 20 C -0.392 4.392 21 H 0.111 0.889 22 C 0.066 3.934 23 N -0.866 5.866 24 Si 0.907 3.093 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.258 1.258 28 C -0.200 4.200 29 C -0.045 4.045 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.283 0.717 45 H 0.121 0.879 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -1.743 26.491 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 H 0.103 0.897 4 C -0.008 4.008 5 O -0.301 6.301 6 C -0.014 4.014 7 C -0.207 4.207 8 C 0.046 3.954 9 H 0.106 0.894 10 N -0.378 5.378 11 C 0.349 3.651 12 O -0.438 6.438 13 C -0.301 4.301 14 C 0.017 3.983 15 C -0.191 4.191 16 C -0.055 4.055 17 C -0.249 4.249 18 C 0.119 3.881 19 O -0.105 6.105 20 C -0.467 4.467 21 H 0.128 0.872 22 C -0.139 4.139 23 N -0.502 5.502 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.182 1.182 28 C -0.219 4.219 29 C -0.063 4.063 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.234 0.766 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.008 -2.258 26.252 26.821 hybrid contribution -0.424 1.033 -0.552 1.246 sum 4.584 -1.225 25.701 26.135 Atomic orbital electron populations 1.21752 0.93695 1.02524 1.02410 1.22093 0.97105 1.01111 0.95107 0.89717 1.22628 0.81063 0.99835 0.97320 1.87941 1.20165 1.76419 1.45615 1.22577 0.99324 0.94678 0.84815 1.22637 0.96342 1.02591 0.99096 1.20928 0.93719 0.96995 0.83800 0.89396 1.45889 1.70622 1.12811 1.08448 1.18417 0.76359 0.86872 0.83483 1.90777 1.51626 1.15526 1.85843 1.22459 1.14182 1.00583 0.92842 1.22301 0.86420 0.98818 0.90773 1.18524 1.13336 0.94007 0.93257 1.21046 0.94416 0.98665 0.91375 1.21225 1.09207 0.94478 0.99979 1.19364 0.90753 0.90758 0.87241 1.83501 1.72222 1.40109 1.14637 1.20877 1.49169 0.95874 0.80767 0.87187 1.24542 0.95506 1.00449 0.93443 1.69612 1.44907 1.37523 0.98139 0.86155 0.79091 0.82793 0.78773 1.19629 1.20503 1.18210 1.20143 1.10649 1.00073 0.91020 1.20879 0.95526 0.93022 0.96891 0.92330 0.92137 0.91832 0.88428 0.92815 0.88509 0.92865 0.90012 0.90817 0.76622 0.85897 0.85796 0.86525 0.84487 0.90637 0.86121 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.07 37.15 0.34 -0.54 16 2 C -0.13 -0.89 2.48 -90.48 -0.22 -1.11 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.07 0.45 6.13 37.21 0.23 0.68 16 5 O -0.38 -3.31 10.77 -35.23 -0.38 -3.69 16 6 C 0.06 0.48 6.84 37.21 0.25 0.74 16 7 C -0.17 -1.45 5.72 -26.59 -0.15 -1.60 16 8 C 0.15 1.32 1.95 -67.75 -0.13 1.19 16 9 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 10 N -0.73 -6.85 4.47 -55.07 -0.25 -7.10 16 11 C 0.56 7.22 7.71 -13.04 -0.10 7.12 16 12 O -0.56 -9.16 15.90 5.17 0.08 -9.08 16 13 C -0.28 -3.53 9.41 -37.51 -0.35 -3.89 16 14 C 0.04 0.53 9.45 -37.20 -0.35 0.17 16 15 C -0.19 -3.06 5.87 -105.03 -0.62 -3.68 16 16 C -0.04 -0.63 9.78 -39.15 -0.38 -1.02 16 17 C -0.23 -4.66 9.15 -39.47 -0.36 -5.02 16 18 C 0.17 3.75 6.66 -38.89 -0.26 3.50 16 19 O -0.20 -5.01 8.57 0.75 0.01 -5.01 16 20 C -0.39 -10.45 9.94 30.91 0.31 -10.14 16 21 H 0.11 2.99 5.41 -52.49 -0.28 2.70 16 22 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 23 N -0.87 -23.80 13.96 55.48 0.77 -23.02 16 24 Si 0.91 20.49 28.62 -169.99 -4.86 15.63 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 28 C -0.20 -3.66 9.97 -39.47 -0.39 -4.05 16 29 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 2.84 8.55 -40.82 -0.35 2.49 16 40 H 0.12 1.30 6.07 -52.48 -0.32 0.98 16 41 H 0.12 1.79 7.52 -52.49 -0.39 1.39 16 42 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 43 H 0.14 2.90 5.61 -52.49 -0.29 2.61 16 44 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 46 H 0.12 1.49 6.16 -52.49 -0.32 1.17 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -29.94 380.91 -8.09 -38.03 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.54 Total: 5.56 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.66 Total: -17.06 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.53 Total: -30.12 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.29 Total: -17.78 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.86 Total: 15.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.94 -8.09 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278547642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.082 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds