Wall clock time and date at job start Tue Mar 31 2020 17:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.57916 * 2 1 4 4 C 1.53093 * 109.52236 * 120.15456 * 2 1 3 5 5 O 1.42910 * 109.41466 * 177.51203 * 4 2 1 6 6 C 1.42901 * 114.09913 * 298.84369 * 5 4 2 7 7 C 1.53098 * 109.48758 * 61.11060 * 6 5 4 8 8 C 1.53177 * 109.52296 * 239.83989 * 2 1 3 9 9 H 1.09005 * 109.54457 * 303.07125 * 8 2 1 10 10 N 1.46494 * 109.54317 * 63.24753 * 8 2 1 11 11 C 1.34777 * 120.00176 * 204.82612 * 10 8 2 12 12 O 1.21724 * 120.00227 * 359.97438 * 11 10 8 13 13 C 1.46254 * 120.00339 * 179.97438 * 11 10 8 14 14 C 1.35019 * 120.00472 * 179.97438 * 13 11 10 15 15 C 1.46955 * 120.00396 * 179.97438 * 14 13 11 16 16 C 1.40026 * 120.10309 * 180.02562 * 15 14 13 17 17 C 1.37596 * 119.89983 * 179.97438 * 16 15 14 18 18 C 1.39183 * 120.09847 * 0.02562 * 17 16 15 19 19 O 1.35573 * 119.89238 * 179.97438 * 18 17 16 20 20 C 1.34773 * 117.00439 * 354.44777 * 19 18 17 21 21 H 1.07997 * 120.00068 * 5.07196 * 20 19 18 22 22 C 1.38723 * 120.00288 * 185.06906 * 20 19 18 23 23 N 1.31501 * 120.00128 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99794 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47305 * 89.99784 * 24 22 20 26 26 H 1.48499 * 109.47275 * 210.00388 * 24 22 20 27 27 H 1.48506 * 109.47334 * 330.00003 * 24 22 20 28 28 C 1.39168 * 120.20525 * 359.97438 * 18 17 16 29 29 C 1.37603 * 120.10443 * 0.02562 * 28 18 17 30 30 H 1.08995 * 109.47379 * 180.16013 * 1 2 3 31 31 H 1.09005 * 109.47258 * 300.15832 * 1 2 3 32 32 H 1.08998 * 109.47451 * 60.16101 * 1 2 3 33 33 H 1.08995 * 109.48291 * 297.49635 * 4 2 1 34 34 H 1.09004 * 109.48374 * 57.52458 * 4 2 1 35 35 H 1.08994 * 109.47751 * 181.14228 * 6 5 4 36 36 H 1.08998 * 109.48008 * 301.17264 * 6 5 4 37 37 H 1.08998 * 109.60231 * 182.57815 * 7 6 5 38 38 H 1.08997 * 109.45770 * 62.38367 * 7 6 5 39 39 H 0.96999 * 120.00275 * 24.82024 * 10 8 2 40 40 H 1.08007 * 119.99584 * 359.97438 * 13 11 10 41 41 H 1.07998 * 119.99671 * 0.02562 * 14 13 11 42 42 H 1.08003 * 120.04713 * 359.96102 * 16 15 14 43 43 H 1.07996 * 119.95396 * 179.72789 * 17 16 15 44 44 H 0.97000 * 119.99934 * 179.97438 * 23 22 20 45 45 H 1.08002 * 119.95345 * 180.02562 * 28 18 17 46 46 H 1.07992 * 120.05555 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 3.4694 -0.7743 1.2163 6 6 4.0043 -1.4816 0.0958 7 6 3.5715 -0.7892 -1.1993 8 6 2.0418 -0.7253 -1.2483 9 1 1.6354 -1.7364 -1.2749 10 7 1.6199 0.0042 -2.4465 11 6 1.4973 -0.6440 -3.6219 12 8 1.7376 -1.8355 -3.6878 13 6 1.0755 0.0841 -4.8181 14 6 0.9532 -0.5650 -5.9956 15 6 0.5288 0.1665 -7.1974 16 6 0.4008 -0.5048 -8.4196 17 6 0.0026 0.1842 -9.5421 18 6 -0.2721 1.5464 -9.4642 19 8 -0.6636 2.2212 -10.5730 20 6 -0.6556 1.5423 -11.7372 21 1 -0.4257 0.4871 -11.7455 22 6 -0.9426 2.1989 -12.9250 23 7 -0.9352 1.5364 -14.0610 24 14 -1.3410 4.0239 -12.9107 25 1 -0.0884 4.8053 -13.0705 26 1 -2.2661 4.3374 -14.0292 27 1 -1.9853 4.3799 -11.6209 28 6 -0.1463 2.2178 -8.2517 29 6 0.2513 1.5370 -7.1239 30 1 -0.3634 -1.0276 0.0029 31 1 -0.3634 0.5163 0.8886 32 1 -0.3634 0.5113 -0.8914 33 1 1.7159 -0.1885 2.1389 34 1 1.6430 -1.7392 1.2679 35 1 5.0925 -1.4904 0.1573 36 1 3.6315 -2.5059 0.1008 37 1 3.9402 -1.3529 -2.0562 38 1 3.9792 0.2214 -1.2244 39 1 1.4286 0.9537 -2.3941 40 1 0.8619 1.1413 -4.7595 41 1 1.1664 -1.6221 -6.0541 42 1 0.6144 -1.5617 -8.4810 43 1 -0.0922 -0.3318 -10.4861 44 1 -1.1363 1.9955 -14.8915 45 1 -0.3609 3.2748 -8.1958 46 1 0.3483 2.0587 -6.1833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278547642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:33 Heat of formation + Delta-G solvation = -98.498174 kcal Electronic energy + Delta-G solvation = -26717.808096 eV Core-core repulsion = 22765.246461 eV Total energy + Delta-G solvation = -3952.561635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31940 -40.94140 -39.87222 -38.59900 -36.55706 -34.77064 -34.22041 -33.84291 -32.46152 -32.00745 -29.87728 -27.79960 -27.45444 -26.05352 -24.14366 -23.74760 -23.35256 -21.97106 -21.48487 -20.53236 -19.64460 -19.15960 -18.26595 -17.69319 -17.14834 -16.72129 -16.49942 -16.26087 -16.02737 -15.80451 -15.64663 -15.56745 -15.38529 -15.10788 -14.89290 -14.46657 -14.32378 -14.23950 -14.06183 -13.80213 -13.39723 -13.18905 -13.03071 -12.98341 -12.73452 -12.63685 -12.42479 -12.36172 -12.08179 -11.94325 -11.80602 -11.39529 -11.31238 -11.16243 -11.06566 -10.67918 -10.54246 -10.06064 -9.92600 -8.74905 -8.54126 -6.25971 -0.28898 0.54290 1.09923 1.32305 1.37100 1.52024 2.20518 2.25838 2.34763 2.79778 2.91993 2.99782 3.14627 3.53299 3.74076 3.79198 3.84359 3.91586 4.03583 4.04563 4.21375 4.25290 4.31918 4.40952 4.43690 4.46619 4.58984 4.63429 4.65495 4.76091 4.82662 4.83269 4.92327 5.02643 5.04511 5.11435 5.19243 5.20845 5.27438 5.33574 5.38465 5.50543 5.58596 5.69825 5.79259 5.82905 6.13798 6.19768 6.59845 6.78960 7.28051 7.50100 8.56665 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.001738 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.219712 B =16110.102789 C =16495.763068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 H 0.095 0.905 4 C 0.064 3.936 5 O -0.396 6.396 6 C 0.064 3.936 7 C -0.163 4.163 8 C 0.148 3.852 9 H 0.068 0.932 10 N -0.707 5.707 11 C 0.550 3.450 12 O -0.594 6.594 13 C -0.239 4.239 14 C 0.010 3.990 15 C -0.160 4.160 16 C -0.047 4.047 17 C -0.244 4.244 18 C 0.136 3.864 19 O -0.233 6.233 20 C -0.404 4.404 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.917 5.917 24 Si 0.972 3.028 25 H -0.265 1.265 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.194 4.194 29 C -0.039 4.039 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.415 0.585 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.138 0.862 43 H 0.113 0.887 44 H 0.286 0.714 45 H 0.139 0.861 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 0.065 31.175 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.113 0.887 4 C -0.013 4.013 5 O -0.315 6.315 6 C -0.013 4.013 7 C -0.202 4.202 8 C 0.043 3.957 9 H 0.086 0.914 10 N -0.358 5.358 11 C 0.342 3.658 12 O -0.477 6.477 13 C -0.259 4.259 14 C -0.010 4.010 15 C -0.161 4.161 16 C -0.065 4.065 17 C -0.263 4.263 18 C 0.085 3.915 19 O -0.139 6.139 20 C -0.480 4.480 21 H 0.101 0.899 22 C -0.188 4.188 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.190 1.190 26 H -0.193 1.193 27 H -0.183 1.183 28 C -0.213 4.213 29 C -0.057 4.057 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.253 0.747 40 H 0.174 0.826 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.157 0.843 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.453 -0.441 31.022 31.501 hybrid contribution -0.379 0.231 -1.350 1.421 sum 5.074 -0.210 29.672 30.103 Atomic orbital electron populations 1.21747 0.93020 1.02270 1.03173 1.22028 0.97504 1.01155 0.93671 0.88713 1.22803 0.80147 1.00326 0.98037 1.87929 1.21320 1.76506 1.45773 1.22603 1.00064 0.94480 0.84180 1.22568 0.96065 1.02656 0.98907 1.21010 0.93901 0.96365 0.84417 0.91416 1.45773 1.68817 1.13560 1.07645 1.18561 0.76325 0.86445 0.84500 1.90784 1.53145 1.17281 1.86456 1.22803 1.09580 1.01804 0.91728 1.22158 0.89167 0.98937 0.90708 1.18817 1.09755 0.94367 0.93136 1.21289 0.94282 0.99846 0.91046 1.21224 1.10221 0.94608 1.00230 1.19945 0.92233 0.91532 0.87755 1.83458 1.75754 1.40156 1.14556 1.20751 1.49859 0.95131 0.82254 0.89888 1.25339 0.95701 1.04751 0.92973 1.69701 1.47951 1.39220 0.98767 0.85199 0.79114 0.77584 0.78740 1.18967 1.19291 1.18333 1.20500 1.09449 1.01136 0.90187 1.21354 0.93756 0.92725 0.97846 0.93127 0.90469 0.91994 0.86587 0.92690 0.87407 0.92878 0.91899 0.90263 0.74736 0.82594 0.86150 0.84456 0.86925 0.90380 0.84284 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.07 71.98 0.65 -0.58 16 2 C -0.12 -1.22 2.48 -10.71 -0.03 -1.24 16 3 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 4 C 0.06 0.65 6.13 72.01 0.44 1.09 16 5 O -0.40 -5.86 10.77 -148.98 -1.60 -7.47 16 6 C 0.06 0.86 6.84 72.01 0.49 1.35 16 7 C -0.16 -2.47 5.72 30.69 0.18 -2.29 16 8 C 0.15 2.21 1.95 45.11 0.09 2.30 16 9 H 0.07 1.34 7.58 -2.38 -0.02 1.32 16 10 N -0.71 -10.66 4.47 -446.34 -2.00 -12.66 16 11 C 0.55 12.37 7.71 86.33 0.67 13.04 16 12 O -0.59 -18.37 15.90 -4.43 -0.07 -18.44 16 13 C -0.24 -4.86 9.41 23.61 0.22 -4.63 16 14 C 0.01 0.26 9.45 23.81 0.23 0.48 16 15 C -0.16 -4.67 5.87 -20.13 -0.12 -4.79 16 16 C -0.05 -1.58 9.78 22.55 0.22 -1.36 16 17 C -0.24 -10.30 9.15 22.35 0.20 -10.10 16 18 C 0.14 6.01 6.66 22.72 0.15 6.16 16 19 O -0.23 -12.08 8.57 -20.22 -0.17 -12.25 16 20 C -0.40 -23.03 9.94 67.94 0.68 -22.36 16 21 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16 22 C 0.01 0.67 5.49 84.86 0.47 1.13 16 23 N -0.92 -53.42 13.96 21.62 0.30 -53.11 16 24 Si 0.97 43.66 28.62 68.60 1.96 45.62 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 28 C -0.19 -6.69 9.97 22.34 0.22 -6.46 16 29 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.06 0.55 7.68 -2.39 -0.02 0.53 16 33 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.42 3.78 8.55 -92.71 -0.79 2.99 16 40 H 0.16 2.15 6.07 -2.91 -0.02 2.13 16 41 H 0.12 3.21 7.52 -2.91 -0.02 3.18 16 42 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.11 5.26 5.61 -2.91 -0.02 5.25 16 44 H 0.29 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.17 2.97 6.16 -2.91 -0.02 2.95 16 Total: -1.00 -70.03 380.91 3.60 -66.43 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.21 Total: 20.98 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.97 Total: -29.11 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -1.69 Total: -65.77 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.85 Total: -38.16 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.96 Total: 45.62 kcal Total: -70.03 3.60 -66.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278547642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.069 kcal (2) G-P(sol) polarization free energy of solvation -70.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds