Wall clock time and date at job start Tue Mar 31 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.57065 * 2 1 4 4 C 1.53087 * 109.52061 * 239.83826 * 2 1 3 5 5 O 1.42903 * 109.41427 * 182.48346 * 4 2 1 6 6 C 1.42907 * 114.09656 * 61.16269 * 5 4 2 7 7 C 1.53096 * 109.41084 * 298.84168 * 6 5 4 8 8 C 1.53167 * 109.21753 * 57.57709 * 7 6 5 9 9 H 1.09003 * 109.54566 * 62.91700 * 8 7 6 10 10 N 1.46503 * 109.54731 * 183.18089 * 8 7 6 11 11 C 1.34766 * 119.99948 * 275.00343 * 10 8 7 12 12 O 1.21718 * 120.00412 * 359.97438 * 11 10 8 13 13 C 1.46260 * 119.99860 * 179.97438 * 11 10 8 14 14 C 1.35028 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.46963 * 119.99982 * 179.97438 * 14 13 11 16 16 C 1.40025 * 120.09829 * 359.71934 * 15 14 13 17 17 C 1.37599 * 119.89372 * 179.74163 * 16 15 14 18 18 C 1.39178 * 120.10295 * 0.51008 * 17 16 15 19 19 O 1.35567 * 119.89962 * 179.74035 * 18 17 16 20 20 C 1.34780 * 116.99953 * 174.47317 * 19 18 17 21 21 H 1.07999 * 120.00119 * 5.05172 * 20 19 18 22 22 C 1.38723 * 120.00156 * 185.05573 * 20 19 18 23 23 N 1.31510 * 119.99596 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00256 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47115 * 59.99933 * 24 22 20 26 26 H 1.48496 * 109.47109 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47259 * 300.00211 * 24 22 20 28 28 C 1.39181 * 120.20060 * 359.76702 * 18 17 16 29 29 C 1.37600 * 120.10182 * 359.97383 * 28 18 17 30 30 H 1.08995 * 109.47609 * 180.16096 * 1 2 3 31 31 H 1.09007 * 109.47295 * 300.15853 * 1 2 3 32 32 H 1.08999 * 109.47397 * 60.15643 * 1 2 3 33 33 H 1.09001 * 109.48065 * 62.50474 * 4 2 1 34 34 H 1.08995 * 109.49206 * 302.47359 * 4 2 1 35 35 H 1.08998 * 109.48072 * 178.86395 * 6 5 4 36 36 H 1.08991 * 109.47957 * 58.82347 * 6 5 4 37 37 H 1.09000 * 109.52206 * 177.51708 * 7 6 5 38 38 H 1.08997 * 109.52435 * 297.63687 * 7 6 5 39 39 H 0.96999 * 119.99479 * 94.99893 * 10 8 7 40 40 H 1.08000 * 119.99989 * 359.97438 * 13 11 10 41 41 H 1.08000 * 119.99975 * 359.97438 * 14 13 11 42 42 H 1.07998 * 120.05270 * 359.97438 * 16 15 14 43 43 H 1.07993 * 119.94922 * 180.27780 * 17 16 15 44 44 H 0.97001 * 119.99582 * 180.02562 * 23 22 20 45 45 H 1.07994 * 119.94581 * 179.97438 * 28 18 17 46 46 H 1.07994 * 120.05213 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0415 -0.7250 -1.2475 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4817 -0.0956 7 6 3.5715 -0.7871 1.1982 8 6 2.0420 -0.7239 1.2492 9 1 1.6359 -1.7351 1.2757 10 7 1.6213 0.0065 2.4475 11 6 1.5041 -0.6398 3.6242 12 8 1.7473 -1.8306 3.6914 13 6 1.0846 0.0895 4.8205 14 6 0.9677 -0.5580 5.9997 15 6 0.5467 0.1750 7.2019 16 6 0.2720 1.5460 7.1282 17 6 -0.1270 2.2271 8.2553 18 6 -0.2474 1.5575 9.4694 19 8 -0.6357 2.2336 10.5784 20 6 -0.8440 1.5087 11.6954 21 1 -0.6224 0.4517 11.7024 22 6 -1.3431 2.1202 12.8362 23 7 -1.6135 3.4072 12.8275 24 14 -1.6324 1.1154 14.3841 25 1 -0.3501 0.5145 14.8311 26 1 -2.1661 1.9966 15.4537 27 1 -2.6116 0.0363 14.0980 28 6 0.0302 0.1959 9.5486 29 6 0.4246 -0.4944 8.4256 30 1 -0.3634 -1.0276 0.0029 31 1 -0.3634 0.5163 0.8886 32 1 -0.3634 0.5114 -0.8914 33 1 1.7158 -0.1886 -2.1388 34 1 1.6431 -1.7393 -1.2678 35 1 5.0925 -1.4903 -0.1570 36 1 3.6315 -2.5058 -0.1006 37 1 3.9416 -1.3499 2.0552 38 1 3.9789 0.2236 1.2229 39 1 1.4271 0.9554 2.3938 40 1 0.8691 1.1461 4.7610 41 1 1.1835 -1.6145 6.0593 42 1 0.3695 2.0674 6.1874 43 1 -0.3434 3.2836 8.1985 44 1 -1.9621 3.8349 13.6253 45 1 -0.0642 -0.3195 10.4930 46 1 0.6402 -1.5508 8.4881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278547645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:38 Heat of formation + Delta-G solvation = -101.555381 kcal Electronic energy + Delta-G solvation = -26682.434239 eV Core-core repulsion = 22729.740033 eV Total energy + Delta-G solvation = -3952.694205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30964 -40.82981 -39.85955 -38.49550 -36.55098 -34.73985 -34.05097 -33.81725 -32.44552 -31.96875 -29.71904 -27.78311 -27.50449 -26.09169 -24.23558 -23.64686 -23.34915 -22.00367 -21.48593 -20.54919 -19.70990 -18.85420 -18.25875 -17.67311 -17.14582 -16.56485 -16.48125 -16.24199 -16.06601 -15.93290 -15.62412 -15.53869 -15.29115 -15.01712 -14.89397 -14.59635 -14.33385 -14.10855 -13.80480 -13.59963 -13.32031 -13.16430 -13.02988 -12.98330 -12.68590 -12.57812 -12.42392 -12.23800 -12.14839 -12.08225 -11.80371 -11.39105 -11.22220 -11.11089 -11.05792 -10.58115 -10.54006 -10.05288 -9.89838 -8.68590 -8.52427 -6.18647 -0.25107 0.57960 1.13299 1.35481 1.46955 1.51213 2.15131 2.21294 2.36428 2.86017 2.92089 3.17374 3.42005 3.53200 3.74617 3.81004 3.84307 3.94048 4.04477 4.08109 4.21364 4.26699 4.33260 4.41690 4.43982 4.48099 4.59684 4.65059 4.66120 4.76028 4.82684 4.92052 4.94117 5.01587 5.03686 5.04776 5.18285 5.19871 5.27835 5.32754 5.33702 5.50920 5.59006 5.63468 5.80882 5.96814 6.10038 6.19822 6.59844 6.91757 7.28253 7.68748 8.69307 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.036534 B = 0.001688 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.225492 B =16582.884730 C =16914.374538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 H 0.093 0.907 4 C 0.064 3.936 5 O -0.397 6.397 6 C 0.064 3.936 7 C -0.163 4.163 8 C 0.148 3.852 9 H 0.068 0.932 10 N -0.708 5.708 11 C 0.552 3.448 12 O -0.593 6.593 13 C -0.246 4.246 14 C 0.016 3.984 15 C -0.171 4.171 16 C -0.037 4.037 17 C -0.207 4.207 18 C 0.129 3.871 19 O -0.219 6.219 20 C -0.418 4.418 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.257 1.257 28 C -0.249 4.249 29 C -0.041 4.041 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.415 0.585 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.123 0.877 44 H 0.275 0.725 45 H 0.125 0.875 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -7.094 -26.088 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.112 0.888 4 C -0.013 4.013 5 O -0.316 6.316 6 C -0.013 4.013 7 C -0.202 4.202 8 C 0.043 3.957 9 H 0.087 0.913 10 N -0.359 5.359 11 C 0.343 3.657 12 O -0.476 6.476 13 C -0.267 4.267 14 C -0.004 4.004 15 C -0.172 4.172 16 C -0.055 4.055 17 C -0.226 4.226 18 C 0.077 3.923 19 O -0.124 6.124 20 C -0.493 4.493 21 H 0.123 0.877 22 C -0.217 4.217 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.269 4.269 29 C -0.059 4.059 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.252 0.748 40 H 0.169 0.831 41 H 0.142 0.858 42 H 0.178 0.822 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.681 -7.410 -26.021 27.868 hybrid contribution -0.450 0.095 1.449 1.520 sum 6.231 -7.315 -24.572 26.384 Atomic orbital electron populations 1.21747 0.93050 1.02286 1.03125 1.22034 0.97490 1.01146 0.93744 0.88831 1.22794 0.80153 1.00338 0.97968 1.87927 1.21307 1.76519 1.45797 1.22608 1.00072 0.94489 0.84119 1.22566 0.96052 1.02616 0.98974 1.21004 0.93925 0.96355 0.84374 0.91341 1.45779 1.68885 1.13621 1.07600 1.18517 0.76277 0.86425 0.84434 1.90772 1.53127 1.17213 1.86498 1.22776 1.10275 1.01690 0.91936 1.22166 0.88767 0.98906 0.90586 1.18780 1.10827 0.94044 0.93505 1.21281 0.93689 0.93046 0.97466 1.20427 1.10691 1.00832 0.90698 1.20194 0.92166 0.91954 0.87951 1.83882 1.74878 1.36708 1.16960 1.21856 1.45271 0.94493 0.87725 0.87733 1.26610 0.95322 0.97460 1.02320 1.70142 1.42247 1.11519 1.31069 0.84652 0.79624 0.77320 0.74704 1.18117 1.19579 1.18162 1.21204 1.10850 0.94199 1.00604 1.21316 0.93798 0.99886 0.90870 0.93052 0.92113 0.90472 0.86598 0.92612 0.87384 0.92783 0.91879 0.90357 0.74837 0.83105 0.85830 0.82234 0.85915 0.91585 0.85759 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.07 71.98 0.65 -0.71 16 2 C -0.12 -1.33 2.48 -10.70 -0.03 -1.35 16 3 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 4 C 0.06 0.70 6.13 72.01 0.44 1.14 16 5 O -0.40 -6.06 10.77 -148.98 -1.60 -7.66 16 6 C 0.06 0.89 6.84 72.01 0.49 1.38 16 7 C -0.16 -2.57 5.71 30.68 0.18 -2.40 16 8 C 0.15 2.33 1.95 45.11 0.09 2.42 16 9 H 0.07 1.39 7.59 -2.39 -0.02 1.37 16 10 N -0.71 -11.51 4.49 -446.35 -2.00 -13.52 16 11 C 0.55 13.01 7.70 86.33 0.66 13.67 16 12 O -0.59 -18.67 15.90 -4.40 -0.07 -18.74 16 13 C -0.25 -5.42 9.41 23.62 0.22 -5.20 16 14 C 0.02 0.41 9.45 23.82 0.23 0.63 16 15 C -0.17 -5.24 5.87 -20.13 -0.12 -5.36 16 16 C -0.04 -1.14 9.40 22.55 0.21 -0.93 16 17 C -0.21 -8.19 9.97 22.34 0.22 -7.97 16 18 C 0.13 6.14 6.66 22.72 0.15 6.29 16 19 O -0.22 -12.66 9.74 -20.22 -0.20 -12.86 16 20 C -0.42 -23.44 9.48 67.94 0.64 -22.80 16 21 H 0.11 5.35 5.18 -2.91 -0.02 5.34 16 22 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16 23 N -0.91 -54.20 13.67 21.62 0.30 -53.90 16 24 Si 1.02 41.35 29.55 68.60 2.03 43.38 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 28 C -0.25 -10.41 9.14 22.35 0.20 -10.21 16 29 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.61 7.69 -2.38 -0.02 0.59 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.41 4.42 8.55 -92.71 -0.79 3.63 16 40 H 0.15 2.48 6.07 -2.91 -0.02 2.46 16 41 H 0.12 3.31 7.52 -2.91 -0.02 3.29 16 42 H 0.16 3.50 6.16 -2.91 -0.02 3.48 16 43 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 44 H 0.28 14.97 8.31 -92.71 -0.77 14.19 16 45 H 0.12 5.25 5.62 -2.91 -0.02 5.23 16 46 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -72.41 382.06 3.60 -68.81 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.21 Total: 27.56 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.94 Total: -33.06 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -1.71 Total: -67.42 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.87 Total: -39.26 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -72.41 3.60 -68.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278547645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.747 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds