Wall clock time and date at job start Tue Mar 31 2020 17:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.52297 * 2 1 4 4 C 1.53090 * 109.52020 * 120.12564 * 2 1 3 5 5 O 1.42915 * 109.41235 * 177.44636 * 4 2 1 6 6 C 1.42907 * 114.15007 * 298.94149 * 5 4 2 7 7 C 1.53091 * 109.41481 * 61.12587 * 6 5 4 8 8 C 1.53173 * 109.52286 * 239.87255 * 2 1 3 9 9 H 1.09008 * 109.54189 * 63.24924 * 8 2 1 10 10 N 1.46495 * 109.54609 * 302.98524 * 8 2 1 11 11 C 1.34779 * 120.00511 * 155.00094 * 10 8 2 12 12 O 1.21728 * 119.99684 * 359.97438 * 11 10 8 13 13 C 1.46257 * 120.00403 * 180.02562 * 11 10 8 14 14 C 1.35012 * 119.99907 * 179.97438 * 13 11 10 15 15 C 1.46961 * 119.99838 * 179.97438 * 14 13 11 16 16 C 1.40017 * 120.10124 * 359.72210 * 15 14 13 17 17 C 1.37600 * 119.89949 * 179.72100 * 16 15 14 18 18 C 1.39181 * 120.10093 * 0.53261 * 17 16 15 19 19 O 1.35561 * 119.89997 * 179.74242 * 18 17 16 20 20 C 1.34781 * 117.00374 * 174.47082 * 19 18 17 21 21 H 1.08006 * 119.99836 * 5.05411 * 20 19 18 22 22 C 1.38713 * 120.00454 * 185.05879 * 20 19 18 23 23 N 1.31506 * 119.99852 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00146 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47268 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47133 * 119.99593 * 24 22 20 27 27 H 1.48503 * 109.47407 * 239.99824 * 24 22 20 28 28 C 1.39174 * 120.20027 * 359.76524 * 18 17 16 29 29 C 1.37600 * 120.10459 * 359.95797 * 28 18 17 30 30 H 1.08999 * 109.47806 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47326 * 300.00282 * 1 2 3 32 32 H 1.09007 * 109.47228 * 59.99561 * 1 2 3 33 33 H 1.09002 * 109.48394 * 297.49481 * 4 2 1 34 34 H 1.08999 * 109.48108 * 57.53264 * 4 2 1 35 35 H 1.08994 * 109.47968 * 301.13769 * 6 5 4 36 36 H 1.09007 * 109.47291 * 181.10496 * 6 5 4 37 37 H 1.09001 * 109.51842 * 182.48217 * 7 6 5 38 38 H 1.09003 * 109.52247 * 62.29639 * 7 6 5 39 39 H 0.97003 * 120.00064 * 334.99222 * 10 8 2 40 40 H 1.08002 * 119.99751 * 359.97438 * 13 11 10 41 41 H 1.08002 * 120.00342 * 359.97438 * 14 13 11 42 42 H 1.08003 * 120.05295 * 359.97438 * 16 15 14 43 43 H 1.07996 * 119.95363 * 180.28096 * 17 16 15 44 44 H 0.97004 * 119.99663 * 180.02562 * 23 22 20 45 45 H 1.08006 * 119.94889 * 179.97438 * 28 18 17 46 46 H 1.08003 * 120.05632 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7242 1.2480 5 8 3.4694 -0.7750 1.2159 6 6 4.0042 -1.4818 0.0949 7 6 3.5715 -0.7865 -1.1986 8 6 2.0418 -0.7246 -1.2486 9 1 1.7279 -0.1812 -2.1400 10 7 1.4972 -2.0841 -1.2842 11 6 1.3714 -2.7292 -2.4608 12 8 1.7100 -2.1820 -3.4942 13 6 0.8272 -4.0863 -2.4964 14 6 0.7008 -4.7323 -3.6752 15 6 0.1544 -6.0961 -3.7108 16 6 -0.2302 -6.7297 -2.5229 17 6 -0.7466 -8.0046 -2.5617 18 6 -0.8765 -8.6684 -3.7781 19 8 -1.3809 -9.9263 -3.8109 20 6 -1.5883 -10.4709 -5.0263 21 1 -1.2789 -9.9413 -5.9152 22 6 -2.1992 -11.7114 -5.1354 23 7 -2.5756 -12.3565 -4.0529 24 14 -2.4872 -12.4658 -6.8198 25 1 -1.9767 -11.5460 -7.8681 26 1 -1.7724 -13.7645 -6.9094 27 1 -3.9419 -12.6865 -7.0213 28 6 -0.4897 -8.0449 -4.9607 29 6 0.0224 -6.7681 -4.9322 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.7158 -0.1873 2.1390 34 1 1.6430 -1.7385 1.2686 35 1 3.6314 -2.5060 0.0994 36 1 5.0925 -1.4905 0.1564 37 1 3.9416 -1.3490 -2.0557 38 1 3.9780 0.2246 -1.2222 39 1 1.2272 -2.5201 -0.4608 40 1 0.5265 -4.5717 -1.5796 41 1 1.0011 -4.2468 -4.5920 42 1 -0.1255 -6.2171 -1.5781 43 1 -1.0477 -8.4924 -1.6464 44 1 -3.0024 -13.2242 -4.1293 45 1 -0.5920 -8.5640 -5.9023 46 1 0.3219 -6.2848 -5.8505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278547649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:43 Heat of formation + Delta-G solvation = -79.467053 kcal Electronic energy + Delta-G solvation = -27026.258093 eV Core-core repulsion = 23074.521709 eV Total energy + Delta-G solvation = -3951.736384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68807 -39.26273 -38.76172 -36.92349 -35.60994 -33.25062 -33.09333 -32.35223 -31.57456 -30.45498 -28.30269 -27.13604 -25.79049 -25.30146 -23.47218 -22.65873 -22.19767 -21.08986 -19.63861 -19.43707 -18.24172 -17.28688 -17.14458 -16.49367 -16.30013 -16.17837 -15.32521 -15.06681 -14.84594 -14.63130 -14.49004 -14.12808 -14.05394 -13.85366 -13.65038 -13.33484 -13.06822 -12.92582 -12.61999 -12.59846 -12.34493 -12.14359 -11.96773 -11.79837 -11.73906 -11.48073 -11.17247 -11.13533 -11.09884 -10.70199 -10.68723 -10.55007 -9.84378 -9.81249 -9.63718 -9.51926 -9.16937 -8.87873 -8.40996 -7.14337 -6.67642 -4.22382 1.03754 2.10919 2.52666 3.01837 3.03187 3.08920 3.14667 3.50970 3.53889 3.80139 4.18641 4.37635 4.43955 4.48862 4.65904 4.76238 4.89793 4.92973 5.00149 5.01692 5.08514 5.14483 5.23844 5.29548 5.37321 5.49250 5.50212 5.53547 5.58579 5.63963 5.64442 5.72810 5.77498 5.85315 5.98692 6.09069 6.33119 6.44340 6.46630 6.58110 6.76377 6.81792 6.89575 7.10454 7.20994 7.25415 7.48865 7.61246 7.77867 8.30057 8.77285 9.44093 10.49008 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.001833 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.215637 B =15268.876268 C =15566.242364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 H 0.092 0.908 4 C 0.064 3.936 5 O -0.382 6.382 6 C 0.061 3.939 7 C -0.167 4.167 8 C 0.150 3.850 9 H 0.092 0.908 10 N -0.728 5.728 11 C 0.558 3.442 12 O -0.557 6.557 13 C -0.286 4.286 14 C 0.040 3.960 15 C -0.200 4.200 16 C -0.042 4.042 17 C -0.200 4.200 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.393 4.393 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.397 0.603 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 20.351 7.892 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 H 0.110 0.890 4 C -0.013 4.013 5 O -0.301 6.301 6 C -0.016 4.016 7 C -0.206 4.206 8 C 0.044 3.956 9 H 0.110 0.890 10 N -0.381 5.381 11 C 0.350 3.650 12 O -0.438 6.438 13 C -0.307 4.307 14 C 0.021 3.979 15 C -0.201 4.201 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.111 3.889 19 O -0.063 6.063 20 C -0.468 4.468 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.262 4.262 29 C -0.053 4.053 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.232 0.768 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.550 20.401 7.543 23.024 hybrid contribution -0.459 -0.754 -0.656 1.100 sum 7.092 19.647 6.887 21.994 Atomic orbital electron populations 1.21744 0.93692 1.02599 1.02314 1.22073 0.97129 1.00993 0.95193 0.88977 1.22651 0.81306 0.99568 0.97773 1.87940 1.20012 1.76505 1.45620 1.22578 0.99086 0.94822 0.85112 1.22582 0.96302 1.02536 0.99159 1.20908 0.92551 0.83404 0.98688 0.88991 1.45978 1.66439 1.16194 1.09477 1.18415 0.77238 0.86513 0.82850 1.90774 1.51235 1.68801 1.32985 1.22421 1.13428 0.95271 0.99557 1.22283 0.86796 0.91431 0.97423 1.18461 1.12903 0.94885 0.93856 1.20871 0.94990 0.93481 0.96735 1.20151 1.09697 0.95760 0.96278 1.19613 0.90802 0.85067 0.93462 1.83900 1.67951 1.21874 1.32564 1.21529 1.40229 1.02492 0.82567 0.88466 1.25405 0.95586 0.95655 0.99871 1.70023 1.35922 1.14125 1.28327 0.85578 0.78654 0.79184 0.79668 1.18848 1.19900 1.19895 1.21106 1.09272 0.96903 0.98872 1.20993 0.94493 0.93591 0.96203 0.92131 0.92171 0.92028 0.88533 0.93229 0.92883 0.88812 0.90036 0.90287 0.76815 0.86007 0.85957 0.86466 0.86133 0.91623 0.85103 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.01 37.15 0.33 -0.58 16 2 C -0.13 -0.92 2.71 -90.49 -0.24 -1.16 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.06 0.44 5.96 37.20 0.22 0.66 16 5 O -0.38 -3.47 10.76 -35.23 -0.38 -3.85 16 6 C 0.06 0.50 6.68 37.20 0.25 0.75 16 7 C -0.17 -1.46 5.80 -26.59 -0.15 -1.62 16 8 C 0.15 1.34 2.30 -67.75 -0.16 1.18 16 9 H 0.09 0.98 7.58 -51.92 -0.39 0.59 16 10 N -0.73 -7.04 3.67 -55.07 -0.20 -7.24 16 11 C 0.56 7.38 7.71 -13.04 -0.10 7.28 16 12 O -0.56 -9.28 15.89 5.16 0.08 -9.20 16 13 C -0.29 -3.75 9.41 -37.51 -0.35 -4.11 16 14 C 0.04 0.60 9.45 -37.20 -0.35 0.25 16 15 C -0.20 -3.35 5.87 -105.03 -0.62 -3.97 16 16 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 17 C -0.20 -3.94 9.97 -39.46 -0.39 -4.33 16 18 C 0.17 3.80 6.66 -38.88 -0.26 3.54 16 19 O -0.16 -4.36 9.74 0.77 0.01 -4.36 16 20 C -0.39 -10.36 9.48 30.91 0.29 -10.07 16 21 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.85 -23.68 13.67 55.48 0.76 -22.92 16 24 Si 0.95 19.41 29.55 -169.99 -5.02 14.38 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.24 -4.96 9.14 -39.47 -0.36 -5.33 16 29 C -0.03 -0.61 9.79 -39.14 -0.38 -0.99 16 30 H 0.06 0.40 7.26 -51.93 -0.38 0.02 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.31 6.72 -51.93 -0.35 -0.04 16 35 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 36 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.40 3.07 6.66 -40.82 -0.27 2.80 16 40 H 0.12 1.37 6.07 -52.49 -0.32 1.06 16 41 H 0.12 1.81 7.52 -52.49 -0.39 1.42 16 42 H 0.12 1.59 6.16 -52.48 -0.32 1.27 16 43 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.13 2.66 5.62 -52.48 -0.29 2.37 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -30.58 377.37 -8.14 -38.72 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.34 Total: 7.36 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.74 Total: -18.58 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.56 Total: -30.17 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.29 Total: -17.40 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.58 -8.14 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278547649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.745 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds