Wall clock time and date at job start Tue Mar 31 2020 17:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.52297 * 2 1 4 4 C 1.53090 * 109.52020 * 120.12564 * 2 1 3 5 5 O 1.42915 * 109.41235 * 177.44636 * 4 2 1 6 6 C 1.42907 * 114.15007 * 298.94149 * 5 4 2 7 7 C 1.53091 * 109.41481 * 61.12587 * 6 5 4 8 8 C 1.53173 * 109.52286 * 239.87255 * 2 1 3 9 9 H 1.09008 * 109.54189 * 63.24924 * 8 2 1 10 10 N 1.46495 * 109.54609 * 302.98524 * 8 2 1 11 11 C 1.34779 * 120.00511 * 155.00094 * 10 8 2 12 12 O 1.21728 * 119.99684 * 359.97438 * 11 10 8 13 13 C 1.46257 * 120.00403 * 180.02562 * 11 10 8 14 14 C 1.35012 * 119.99907 * 179.97438 * 13 11 10 15 15 C 1.46961 * 119.99838 * 179.97438 * 14 13 11 16 16 C 1.40017 * 120.10124 * 359.72210 * 15 14 13 17 17 C 1.37600 * 119.89949 * 179.72100 * 16 15 14 18 18 C 1.39181 * 120.10093 * 0.53261 * 17 16 15 19 19 O 1.35561 * 119.89997 * 179.74242 * 18 17 16 20 20 C 1.34781 * 117.00374 * 174.47082 * 19 18 17 21 21 H 1.08006 * 119.99836 * 5.05411 * 20 19 18 22 22 C 1.38713 * 120.00454 * 185.05879 * 20 19 18 23 23 N 1.31506 * 119.99852 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00146 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47268 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47133 * 119.99593 * 24 22 20 27 27 H 1.48503 * 109.47407 * 239.99824 * 24 22 20 28 28 C 1.39174 * 120.20027 * 359.76524 * 18 17 16 29 29 C 1.37600 * 120.10459 * 359.95797 * 28 18 17 30 30 H 1.08999 * 109.47806 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47326 * 300.00282 * 1 2 3 32 32 H 1.09007 * 109.47228 * 59.99561 * 1 2 3 33 33 H 1.09002 * 109.48394 * 297.49481 * 4 2 1 34 34 H 1.08999 * 109.48108 * 57.53264 * 4 2 1 35 35 H 1.08994 * 109.47968 * 301.13769 * 6 5 4 36 36 H 1.09007 * 109.47291 * 181.10496 * 6 5 4 37 37 H 1.09001 * 109.51842 * 182.48217 * 7 6 5 38 38 H 1.09003 * 109.52247 * 62.29639 * 7 6 5 39 39 H 0.97003 * 120.00064 * 334.99222 * 10 8 2 40 40 H 1.08002 * 119.99751 * 359.97438 * 13 11 10 41 41 H 1.08002 * 120.00342 * 359.97438 * 14 13 11 42 42 H 1.08003 * 120.05295 * 359.97438 * 16 15 14 43 43 H 1.07996 * 119.95363 * 180.28096 * 17 16 15 44 44 H 0.97004 * 119.99663 * 180.02562 * 23 22 20 45 45 H 1.08006 * 119.94889 * 179.97438 * 28 18 17 46 46 H 1.08003 * 120.05632 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7242 1.2480 5 8 3.4694 -0.7750 1.2159 6 6 4.0042 -1.4818 0.0949 7 6 3.5715 -0.7865 -1.1986 8 6 2.0418 -0.7246 -1.2486 9 1 1.7279 -0.1812 -2.1400 10 7 1.4972 -2.0841 -1.2842 11 6 1.3714 -2.7292 -2.4608 12 8 1.7100 -2.1820 -3.4942 13 6 0.8272 -4.0863 -2.4964 14 6 0.7008 -4.7323 -3.6752 15 6 0.1544 -6.0961 -3.7108 16 6 -0.2302 -6.7297 -2.5229 17 6 -0.7466 -8.0046 -2.5617 18 6 -0.8765 -8.6684 -3.7781 19 8 -1.3809 -9.9263 -3.8109 20 6 -1.5883 -10.4709 -5.0263 21 1 -1.2789 -9.9413 -5.9152 22 6 -2.1992 -11.7114 -5.1354 23 7 -2.5756 -12.3565 -4.0529 24 14 -2.4872 -12.4658 -6.8198 25 1 -1.9767 -11.5460 -7.8681 26 1 -1.7724 -13.7645 -6.9094 27 1 -3.9419 -12.6865 -7.0213 28 6 -0.4897 -8.0449 -4.9607 29 6 0.0224 -6.7681 -4.9322 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.7158 -0.1873 2.1390 34 1 1.6430 -1.7385 1.2686 35 1 3.6314 -2.5060 0.0994 36 1 5.0925 -1.4905 0.1564 37 1 3.9416 -1.3490 -2.0557 38 1 3.9780 0.2246 -1.2222 39 1 1.2272 -2.5201 -0.4608 40 1 0.5265 -4.5717 -1.5796 41 1 1.0011 -4.2468 -4.5920 42 1 -0.1255 -6.2171 -1.5781 43 1 -1.0477 -8.4924 -1.6464 44 1 -3.0024 -13.2242 -4.1293 45 1 -0.5920 -8.5640 -5.9023 46 1 0.3219 -6.2848 -5.8505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278547649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:42 Heat of formation + Delta-G solvation = -98.040693 kcal Electronic energy + Delta-G solvation = -27027.063506 eV Core-core repulsion = 23074.521709 eV Total energy + Delta-G solvation = -3952.541797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50977 -40.83887 -39.75882 -38.48344 -36.40414 -34.74205 -34.04305 -33.76826 -32.42496 -31.96641 -29.69051 -27.77267 -27.48449 -26.11717 -24.65990 -23.74165 -23.32302 -22.31432 -20.75522 -20.41516 -19.78908 -18.84813 -18.39916 -17.12403 -17.10101 -17.01094 -16.45487 -16.41016 -16.10569 -15.98078 -15.62891 -15.56389 -15.17468 -14.97866 -14.87141 -14.61004 -14.15944 -14.10404 -13.62628 -13.60964 -13.32265 -13.25335 -13.15400 -12.93096 -12.73980 -12.71846 -12.56641 -12.20555 -12.11039 -12.05071 -11.77819 -11.32610 -11.21649 -11.12614 -10.95974 -10.58863 -10.49366 -10.03958 -9.89721 -8.68609 -8.52949 -6.18938 -0.25029 0.58054 1.13171 1.35535 1.44693 1.53348 2.14550 2.23339 2.36774 2.85836 2.92939 3.17343 3.41926 3.55811 3.77364 3.81255 3.82413 3.94139 3.97802 4.07993 4.20613 4.29030 4.33687 4.37386 4.45262 4.48420 4.62588 4.65663 4.73999 4.76811 4.86290 4.93723 4.94130 5.02086 5.03914 5.09867 5.13031 5.19189 5.27642 5.32810 5.34351 5.51838 5.58883 5.63594 5.80905 5.96989 6.10064 6.22426 6.56625 6.91639 7.27490 7.68801 8.69303 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.001833 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.215637 B =15268.876268 C =15566.242364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 H 0.097 0.903 4 C 0.059 3.941 5 O -0.396 6.396 6 C 0.062 3.938 7 C -0.163 4.163 8 C 0.147 3.853 9 H 0.074 0.926 10 N -0.709 5.709 11 C 0.553 3.447 12 O -0.591 6.591 13 C -0.247 4.247 14 C 0.017 3.983 15 C -0.171 4.171 16 C -0.037 4.037 17 C -0.207 4.207 18 C 0.130 3.870 19 O -0.219 6.219 20 C -0.416 4.416 21 H 0.106 0.894 22 C -0.019 4.019 23 N -0.913 5.913 24 Si 1.019 2.981 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.249 4.249 29 C -0.040 4.040 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.410 0.590 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.123 0.877 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.398 23.630 8.918 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.115 0.885 4 C -0.017 4.017 5 O -0.315 6.315 6 C -0.014 4.014 7 C -0.202 4.202 8 C 0.042 3.958 9 H 0.092 0.908 10 N -0.361 5.361 11 C 0.345 3.655 12 O -0.474 6.474 13 C -0.268 4.268 14 C -0.003 4.003 15 C -0.172 4.172 16 C -0.055 4.055 17 C -0.226 4.226 18 C 0.078 3.922 19 O -0.125 6.125 20 C -0.491 4.491 21 H 0.123 0.877 22 C -0.218 4.218 23 N -0.550 5.550 24 Si 0.838 3.162 25 H -0.174 1.174 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.268 4.268 29 C -0.058 4.058 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.248 0.752 40 H 0.168 0.832 41 H 0.142 0.858 42 H 0.178 0.822 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.584 23.760 8.609 26.690 hybrid contribution -0.524 -1.119 -0.747 1.443 sum 8.061 22.641 7.863 25.287 Atomic orbital electron populations 1.21735 0.93044 1.02658 1.02740 1.22010 0.97509 1.00918 0.93963 0.88476 1.22831 0.80299 1.00349 0.98237 1.87935 1.21282 1.76607 1.45683 1.22582 0.99696 0.94555 0.84585 1.22529 0.95980 1.02846 0.98849 1.20989 0.92823 0.82764 0.99220 0.90801 1.45852 1.64869 1.16341 1.09016 1.18493 0.77169 0.86632 0.83232 1.90781 1.52631 1.69520 1.34475 1.22765 1.09312 0.94676 1.00008 1.22159 0.89046 0.90639 0.98474 1.18783 1.09594 0.95333 0.93445 1.21279 0.93406 0.92181 0.98610 1.20426 1.09803 0.96892 0.95469 1.20192 0.91710 0.84883 0.95449 1.83882 1.71612 1.24124 1.32840 1.21930 1.40933 1.03181 0.83095 0.87722 1.26609 0.95198 0.95934 1.04056 1.70153 1.38982 1.15028 1.30863 0.84526 0.78651 0.78307 0.74740 1.17424 1.19304 1.19323 1.21201 1.09576 0.98057 0.98014 1.21317 0.93900 0.92496 0.98130 0.92201 0.90556 0.92897 0.86909 0.92311 0.92893 0.88040 0.91815 0.89557 0.75222 0.83200 0.85810 0.82240 0.85914 0.91591 0.85826 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.01 71.98 0.65 -0.68 16 2 C -0.12 -1.30 2.71 -10.71 -0.03 -1.33 16 3 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.06 0.59 5.96 72.01 0.43 1.02 16 5 O -0.40 -5.96 10.76 -148.98 -1.60 -7.56 16 6 C 0.06 0.87 6.68 72.01 0.48 1.35 16 7 C -0.16 -2.51 5.80 30.68 0.18 -2.33 16 8 C 0.15 2.26 2.30 45.11 0.10 2.36 16 9 H 0.07 1.46 7.58 -2.38 -0.02 1.44 16 10 N -0.71 -11.22 3.67 -446.35 -1.64 -12.86 16 11 C 0.55 12.75 7.71 86.33 0.67 13.42 16 12 O -0.59 -18.35 15.89 -4.44 -0.07 -18.42 16 13 C -0.25 -5.34 9.41 23.61 0.22 -5.12 16 14 C 0.02 0.43 9.45 23.81 0.23 0.66 16 15 C -0.17 -5.19 5.87 -20.13 -0.12 -5.31 16 16 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 17 C -0.21 -8.11 9.97 22.35 0.22 -7.89 16 18 C 0.13 6.13 6.66 22.72 0.15 6.28 16 19 O -0.22 -12.64 9.74 -20.17 -0.20 -12.83 16 20 C -0.42 -23.28 9.48 67.93 0.64 -22.64 16 21 H 0.11 5.37 5.18 -2.91 -0.02 5.36 16 22 C -0.02 -1.06 5.49 84.86 0.47 -0.59 16 23 N -0.91 -54.17 13.67 21.62 0.30 -53.87 16 24 Si 1.02 41.38 29.55 68.60 2.03 43.41 16 25 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 26 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 27 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 28 C -0.25 -10.37 9.14 22.34 0.20 -10.17 16 29 C -0.04 -1.35 9.79 22.55 0.22 -1.13 16 30 H 0.06 0.56 7.26 -2.39 -0.02 0.54 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.48 6.72 -2.39 -0.02 0.46 16 35 H 0.05 0.72 7.75 -2.39 -0.02 0.71 16 36 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.41 4.49 6.66 -92.71 -0.62 3.87 16 40 H 0.15 2.41 6.07 -2.91 -0.02 2.40 16 41 H 0.12 3.28 7.52 -2.91 -0.02 3.26 16 42 H 0.16 3.45 6.16 -2.91 -0.02 3.43 16 43 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 44 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 45 H 0.12 5.22 5.62 -2.91 -0.02 5.21 16 46 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -71.87 377.37 4.13 -67.73 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.39 Total: 27.43 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.93 Total: -33.03 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.34 Total: -66.73 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.87 Total: -38.81 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.87 4.13 -67.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278547649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.308 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds