Wall clock time and date at job start Tue Mar 31 2020 17:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51497 * 2 1 4 4 C 1.53715 * 109.44338 * 120.29237 * 2 1 3 5 5 N 1.47144 * 108.16298 * 172.37117 * 4 2 1 6 6 C 1.34784 * 120.98192 * 129.43007 * 5 4 2 7 7 O 1.21586 * 120.00100 * 185.45644 * 6 5 4 8 8 C 1.47536 * 119.99845 * 5.45643 * 6 5 4 9 9 C 1.39671 * 120.19443 * 46.43970 * 8 6 5 10 10 C 1.37822 * 119.91849 * 179.97438 * 9 8 6 11 11 C 1.38580 * 120.32624 * 0.02562 * 10 9 8 12 12 C 1.38031 * 120.39582 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.07190 * 359.97438 * 12 11 10 14 14 O 1.35520 * 120.15564 * 179.97438 * 13 12 11 15 15 C 1.34806 * 117.00354 * 353.61382 * 14 13 12 16 16 H 1.07998 * 120.00462 * 354.14273 * 15 14 13 17 17 C 1.38709 * 120.00314 * 174.14000 * 15 14 13 18 18 N 1.31521 * 119.99381 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00182 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47044 * 89.99744 * 19 17 15 21 21 H 1.48505 * 109.46775 * 210.00037 * 19 17 15 22 22 H 1.48501 * 109.46820 * 329.99797 * 19 17 15 23 23 C 1.47157 * 118.04008 * 309.15728 * 5 4 2 24 24 C 1.53302 * 108.37958 * 50.78482 * 23 5 4 25 25 H 1.09005 * 109.50904 * 67.67757 * 24 23 5 26 26 C 1.53005 * 109.50927 * 187.77321 * 24 23 5 27 27 C 1.52995 * 117.49752 * 248.74815 * 26 24 23 28 28 C 1.52995 * 117.49440 * 180.08502 * 26 24 23 29 29 O 1.42961 * 109.51197 * 239.90319 * 2 1 3 30 30 H 1.09000 * 109.47371 * 180.09469 * 1 2 3 31 31 H 1.08989 * 109.47067 * 300.09718 * 1 2 3 32 32 H 1.09004 * 109.46582 * 60.09782 * 1 2 3 33 33 H 1.09009 * 109.83630 * 52.69037 * 4 2 1 34 34 H 1.09004 * 109.74257 * 292.00176 * 4 2 1 35 35 H 1.08003 * 120.03890 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.84066 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.80191 * 180.27939 * 11 10 9 38 38 H 1.08001 * 119.95840 * 180.02562 * 12 11 10 39 39 H 0.97001 * 119.99568 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.68232 * 170.50515 * 23 5 4 41 41 H 1.08995 * 109.68298 * 291.02829 * 23 5 4 42 42 H 1.09002 * 115.54377 * 34.42294 * 26 24 23 43 43 H 1.09002 * 117.50215 * 0.02562 * 27 26 24 44 44 H 1.09004 * 117.49568 * 145.02747 * 27 26 24 45 45 H 1.09004 * 117.50012 * 214.97908 * 28 26 24 46 46 H 1.08995 * 117.50365 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7311 1.2516 5 7 3.5011 -0.8769 1.1331 6 6 4.3193 -0.5054 2.1377 7 8 5.5249 -0.5404 1.9844 8 6 3.7519 -0.0564 3.4235 9 6 2.7274 -0.7850 4.0319 10 6 2.2018 -0.3607 5.2332 11 6 2.6845 0.7870 5.8417 12 6 3.6967 1.5172 5.2521 13 6 4.2388 1.1042 4.0425 14 8 5.2322 1.8201 3.4619 15 6 5.5594 2.9933 4.0396 16 1 4.9759 3.3691 4.8671 17 6 6.6456 3.7179 3.5715 18 7 7.3565 3.2600 2.5642 19 14 7.0994 5.3433 4.3725 20 1 8.0565 5.0985 5.4812 21 1 7.7274 6.2339 3.3637 22 1 5.8748 5.9894 4.9093 23 6 4.0407 -1.4459 -0.1121 24 6 3.4312 -0.6849 -1.2952 25 1 3.8038 0.3395 -1.2998 26 6 3.8213 -1.3764 -2.6031 27 6 4.7869 -0.6379 -3.5320 28 6 3.3080 -0.7625 -3.9071 29 8 2.0075 -0.6757 -1.1658 30 1 -0.3634 -1.0276 0.0017 31 1 -0.3633 0.5153 0.8890 32 1 -0.3632 0.5123 -0.8909 33 1 1.5787 -1.7157 1.3200 34 1 1.8018 -0.1494 2.1417 35 1 2.3474 -1.6799 3.5615 36 1 1.4099 -0.9253 5.7028 37 1 2.2696 1.1094 6.7853 38 1 4.0678 2.4104 5.7327 39 1 8.1159 3.7669 2.2365 40 1 5.1252 -1.3377 -0.1255 41 1 3.7762 -2.5012 -0.1784 42 1 3.9005 -2.4625 -2.5550 43 1 5.1447 0.3405 -3.2112 44 1 5.5012 -1.2382 -4.0955 45 1 3.0501 -1.4445 -4.7172 46 1 2.6929 0.1343 -3.8333 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279315864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:18 Heat of formation + Delta-G solvation = -44.837419 kcal Electronic energy + Delta-G solvation = -29242.926764 eV Core-core repulsion = 25292.692034 eV Total energy + Delta-G solvation = -3950.234730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30738 -39.16037 -37.82907 -36.82836 -36.41683 -34.27837 -32.61182 -32.39338 -30.74262 -29.05926 -28.58272 -26.20019 -25.47970 -24.32649 -22.65029 -22.29087 -21.46807 -21.14835 -20.57209 -19.14276 -18.09612 -17.28242 -16.70341 -16.44068 -15.91345 -15.66757 -15.05169 -14.99783 -14.71138 -14.47386 -14.16497 -14.01784 -13.80355 -13.59228 -13.24073 -12.88457 -12.77319 -12.67626 -12.44060 -12.20106 -11.95423 -11.75592 -11.59947 -11.50762 -11.31363 -11.19218 -11.03802 -10.93306 -10.84767 -10.68542 -10.48996 -10.42605 -10.18912 -9.86248 -9.66853 -9.04853 -8.92626 -8.29956 -8.15096 -7.38110 -6.50469 -4.11236 1.74318 2.24729 3.08460 3.09668 3.14329 3.18262 3.39728 3.52864 3.89295 4.02073 4.45664 4.53897 4.78682 4.85698 4.95544 4.99930 5.00929 5.08148 5.11310 5.16029 5.21874 5.37963 5.48156 5.48680 5.54837 5.59261 5.62336 5.70620 5.73400 5.80918 5.87164 5.92385 5.97880 6.04225 6.07679 6.10489 6.12592 6.18540 6.51524 6.58566 6.80539 6.91491 7.00319 7.19888 7.23167 7.25632 7.63086 7.80586 7.91406 8.85554 8.91289 9.59719 10.64626 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.004288 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.769976 B = 6528.573925 C = 8188.449408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.064 0.936 4 C 0.081 3.919 5 N -0.623 5.623 6 C 0.576 3.424 7 O -0.512 6.512 8 C -0.221 4.221 9 C -0.042 4.042 10 C -0.225 4.225 11 C -0.054 4.054 12 C -0.234 4.234 13 C 0.188 3.812 14 O -0.145 6.145 15 C -0.401 4.401 16 H 0.094 0.906 17 C 0.044 3.956 18 N -0.841 5.841 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.266 1.266 23 C 0.092 3.908 24 C 0.110 3.890 25 H 0.065 0.935 26 C -0.147 4.147 27 C -0.172 4.172 28 C -0.164 4.164 29 O -0.373 6.373 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -6.872 -6.019 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.082 0.918 4 C -0.043 4.043 5 N -0.360 5.360 6 C 0.366 3.634 7 O -0.386 6.386 8 C -0.225 4.225 9 C -0.061 4.061 10 C -0.244 4.244 11 C -0.072 4.072 12 C -0.253 4.253 13 C 0.130 3.870 14 O -0.045 6.045 15 C -0.477 4.477 16 H 0.112 0.888 17 C -0.163 4.163 18 N -0.473 5.473 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.031 4.031 24 C 0.052 3.948 25 H 0.083 0.917 26 C -0.165 4.165 27 C -0.209 4.209 28 C -0.201 4.201 29 O -0.293 6.293 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.429 -6.913 -6.578 14.889 hybrid contribution 0.350 0.878 0.757 1.211 sum -11.079 -6.036 -5.821 13.895 Atomic orbital electron populations 1.21704 0.92398 1.02934 1.02737 1.22588 0.95230 0.95728 0.85137 0.91833 1.22639 0.80691 1.01250 0.99711 1.48037 1.06445 1.65326 1.16160 1.18262 0.85965 0.75984 0.83199 1.90812 1.14267 1.51709 1.81823 1.18703 1.04903 1.00644 0.98275 1.20774 0.93044 0.97303 0.94966 1.20483 1.05346 1.00266 0.98297 1.20908 0.94535 0.93864 0.97903 1.21152 1.02254 1.04217 0.97693 1.19205 0.88096 0.89545 0.90121 1.84058 1.42582 1.30198 1.47639 1.21426 1.14276 0.94034 1.17974 0.88833 1.25380 0.94891 0.99764 0.96262 1.70092 1.16737 1.37922 1.22579 0.85712 0.79220 0.79761 0.78755 1.19676 1.20124 1.19038 1.22116 1.01162 0.96769 0.83067 1.21941 0.81410 0.98650 0.92801 0.91741 1.22073 1.05279 0.99147 0.90041 1.23055 0.92991 1.02293 1.02592 1.22824 0.96616 1.03191 0.97495 1.87904 1.20621 1.77521 1.43250 0.91706 0.90695 0.91685 0.91185 0.87854 0.86686 0.87099 0.87081 0.85016 0.91786 0.88027 0.91358 0.87157 0.88403 0.88331 0.88807 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.57 37.16 0.36 -1.05 16 2 C 0.07 0.96 3.41 -26.36 -0.09 0.87 16 3 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.08 1.15 4.59 -3.32 -0.02 1.13 16 5 N -0.62 -11.14 3.01 -173.24 -0.52 -11.66 16 6 C 0.58 12.98 7.01 -12.47 -0.09 12.89 16 7 O -0.51 -13.90 15.89 -6.29 -0.10 -14.00 16 8 C -0.22 -4.79 4.90 -104.81 -0.51 -5.30 16 9 C -0.04 -0.73 7.55 -39.20 -0.30 -1.02 16 10 C -0.22 -3.60 10.02 -39.61 -0.40 -3.99 16 11 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 12 C -0.23 -4.93 9.12 -39.44 -0.36 -5.29 16 13 C 0.19 4.62 6.63 -38.60 -0.26 4.36 16 14 O -0.14 -4.23 8.73 -10.76 -0.09 -4.33 16 15 C -0.40 -11.22 9.43 30.91 0.29 -10.93 16 16 H 0.09 2.37 5.32 -52.49 -0.28 2.09 16 17 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 18 N -0.84 -25.15 13.67 55.48 0.76 -24.40 16 19 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C 0.09 1.46 5.93 -3.53 -0.02 1.44 16 24 C 0.11 1.59 2.97 -26.57 -0.08 1.51 16 25 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 26 C -0.15 -1.74 5.39 -90.62 -0.49 -2.23 16 27 C -0.17 -1.88 10.18 -26.69 -0.27 -2.15 16 28 C -0.16 -1.72 10.17 -26.69 -0.27 -2.00 16 29 O -0.37 -5.28 9.94 -35.23 -0.35 -5.63 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.66 8.14 -51.94 -0.42 0.24 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.10 1.51 5.28 -51.93 -0.27 1.24 16 35 H 0.12 1.67 7.17 -52.48 -0.38 1.29 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 2.75 5.73 -52.49 -0.30 2.45 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.10 1.82 7.06 -51.93 -0.37 1.46 16 41 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 42 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 43 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -33.98 376.83 -9.28 -43.26 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.63 Total: 7.71 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.99 Total: -11.95 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.24 Total: -36.06 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.54 Total: -23.96 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.98 -9.28 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279315864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.579 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds