Wall clock time and date at job start Tue Mar 31 2020 17:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51497 * 2 1 4 4 C 1.53715 * 109.44338 * 120.29237 * 2 1 3 5 5 N 1.47144 * 108.16298 * 172.37117 * 4 2 1 6 6 C 1.34784 * 120.98192 * 129.43007 * 5 4 2 7 7 O 1.21586 * 120.00100 * 185.45644 * 6 5 4 8 8 C 1.47536 * 119.99845 * 5.45643 * 6 5 4 9 9 C 1.39671 * 120.19443 * 46.43970 * 8 6 5 10 10 C 1.37822 * 119.91849 * 179.97438 * 9 8 6 11 11 C 1.38580 * 120.32624 * 0.02562 * 10 9 8 12 12 C 1.38031 * 120.39582 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.07190 * 359.97438 * 12 11 10 14 14 O 1.35520 * 120.15564 * 179.97438 * 13 12 11 15 15 C 1.34806 * 117.00354 * 353.61382 * 14 13 12 16 16 H 1.07998 * 120.00462 * 354.14273 * 15 14 13 17 17 C 1.38709 * 120.00314 * 174.14000 * 15 14 13 18 18 N 1.31521 * 119.99381 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00182 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47044 * 89.99744 * 19 17 15 21 21 H 1.48505 * 109.46775 * 210.00037 * 19 17 15 22 22 H 1.48501 * 109.46820 * 329.99797 * 19 17 15 23 23 C 1.47157 * 118.04008 * 309.15728 * 5 4 2 24 24 C 1.53302 * 108.37958 * 50.78482 * 23 5 4 25 25 H 1.09005 * 109.50904 * 67.67757 * 24 23 5 26 26 C 1.53005 * 109.50927 * 187.77321 * 24 23 5 27 27 C 1.52995 * 117.49752 * 248.74815 * 26 24 23 28 28 C 1.52995 * 117.49440 * 180.08502 * 26 24 23 29 29 O 1.42961 * 109.51197 * 239.90319 * 2 1 3 30 30 H 1.09000 * 109.47371 * 180.09469 * 1 2 3 31 31 H 1.08989 * 109.47067 * 300.09718 * 1 2 3 32 32 H 1.09004 * 109.46582 * 60.09782 * 1 2 3 33 33 H 1.09009 * 109.83630 * 52.69037 * 4 2 1 34 34 H 1.09004 * 109.74257 * 292.00176 * 4 2 1 35 35 H 1.08003 * 120.03890 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.84066 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.80191 * 180.27939 * 11 10 9 38 38 H 1.08001 * 119.95840 * 180.02562 * 12 11 10 39 39 H 0.97001 * 119.99568 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.68232 * 170.50515 * 23 5 4 41 41 H 1.08995 * 109.68298 * 291.02829 * 23 5 4 42 42 H 1.09002 * 115.54377 * 34.42294 * 26 24 23 43 43 H 1.09002 * 117.50215 * 0.02562 * 27 26 24 44 44 H 1.09004 * 117.49568 * 145.02747 * 27 26 24 45 45 H 1.09004 * 117.50012 * 214.97908 * 28 26 24 46 46 H 1.08995 * 117.50365 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7311 1.2516 5 7 3.5011 -0.8769 1.1331 6 6 4.3193 -0.5054 2.1377 7 8 5.5249 -0.5404 1.9844 8 6 3.7519 -0.0564 3.4235 9 6 2.7274 -0.7850 4.0319 10 6 2.2018 -0.3607 5.2332 11 6 2.6845 0.7870 5.8417 12 6 3.6967 1.5172 5.2521 13 6 4.2388 1.1042 4.0425 14 8 5.2322 1.8201 3.4619 15 6 5.5594 2.9933 4.0396 16 1 4.9759 3.3691 4.8671 17 6 6.6456 3.7179 3.5715 18 7 7.3565 3.2600 2.5642 19 14 7.0994 5.3433 4.3725 20 1 8.0565 5.0985 5.4812 21 1 7.7274 6.2339 3.3637 22 1 5.8748 5.9894 4.9093 23 6 4.0407 -1.4459 -0.1121 24 6 3.4312 -0.6849 -1.2952 25 1 3.8038 0.3395 -1.2998 26 6 3.8213 -1.3764 -2.6031 27 6 4.7869 -0.6379 -3.5320 28 6 3.3080 -0.7625 -3.9071 29 8 2.0075 -0.6757 -1.1658 30 1 -0.3634 -1.0276 0.0017 31 1 -0.3633 0.5153 0.8890 32 1 -0.3632 0.5123 -0.8909 33 1 1.5787 -1.7157 1.3200 34 1 1.8018 -0.1494 2.1417 35 1 2.3474 -1.6799 3.5615 36 1 1.4099 -0.9253 5.7028 37 1 2.2696 1.1094 6.7853 38 1 4.0678 2.4104 5.7327 39 1 8.1159 3.7669 2.2365 40 1 5.1252 -1.3377 -0.1255 41 1 3.7762 -2.5012 -0.1784 42 1 3.9005 -2.4625 -2.5550 43 1 5.1447 0.3405 -3.2112 44 1 5.5012 -1.2382 -4.0955 45 1 3.0501 -1.4445 -4.7172 46 1 2.6929 0.1343 -3.8333 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279315864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:17 Heat of formation + Delta-G solvation = -66.797732 kcal Electronic energy + Delta-G solvation = -29243.879034 eV Core-core repulsion = 25292.692034 eV Total energy + Delta-G solvation = -3951.187001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78933 -40.67038 -39.43185 -38.12881 -37.85078 -35.77088 -34.37685 -33.71556 -32.24675 -30.67119 -29.84521 -27.45745 -27.39610 -25.67290 -24.01180 -23.29227 -23.05419 -22.33325 -21.64108 -20.68118 -19.93454 -18.91553 -18.14311 -17.79442 -17.32235 -16.93747 -16.59987 -16.42975 -16.13780 -15.90328 -15.63157 -15.49740 -15.41281 -15.08298 -14.64975 -14.41726 -14.19657 -14.00324 -13.69191 -13.55209 -13.23965 -13.15783 -12.92476 -12.70935 -12.56617 -12.49277 -12.45174 -12.37888 -12.15220 -12.13576 -11.84137 -11.52283 -11.37609 -11.25475 -11.09994 -10.87578 -10.75270 -9.85338 -9.57679 -9.08969 -8.50586 -6.21860 0.17095 0.67407 1.30079 1.41421 1.49215 1.66780 1.93879 2.12566 2.33392 2.78602 3.04217 3.11701 3.36916 3.43766 3.60097 3.75098 3.79157 3.91732 3.98351 4.05241 4.09949 4.12233 4.23254 4.29899 4.34153 4.43864 4.49975 4.53674 4.60649 4.63789 4.74564 4.77353 4.90459 4.92081 4.98095 5.01320 5.04027 5.08975 5.16886 5.22914 5.29039 5.39608 5.48928 5.56693 5.67024 5.91179 6.08268 6.13106 6.28448 6.90304 7.17624 7.72856 8.71258 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.004288 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.769976 B = 6528.573925 C = 8188.449408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.067 3.933 3 H 0.034 0.966 4 C 0.077 3.923 5 N -0.617 5.617 6 C 0.565 3.435 7 O -0.579 6.579 8 C -0.235 4.235 9 C -0.035 4.035 10 C -0.190 4.190 11 C -0.042 4.042 12 C -0.249 4.249 13 C 0.147 3.853 14 O -0.211 6.211 15 C -0.422 4.422 16 H 0.109 0.891 17 C -0.023 4.023 18 N -0.914 5.914 19 Si 1.022 2.978 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.245 1.245 23 C 0.089 3.911 24 C 0.118 3.882 25 H 0.029 0.971 26 C -0.156 4.156 27 C -0.178 4.178 28 C -0.149 4.149 29 O -0.368 6.368 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.271 0.729 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -8.750 -4.539 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.052 0.948 4 C -0.044 4.044 5 N -0.351 5.351 6 C 0.356 3.644 7 O -0.458 6.458 8 C -0.240 4.240 9 C -0.053 4.053 10 C -0.208 4.208 11 C -0.060 4.060 12 C -0.269 4.269 13 C 0.094 3.906 14 O -0.115 6.115 15 C -0.498 4.498 16 H 0.126 0.874 17 C -0.222 4.222 18 N -0.551 5.551 19 Si 0.841 3.159 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.169 1.169 23 C -0.033 4.033 24 C 0.059 3.941 25 H 0.047 0.953 26 C -0.175 4.175 27 C -0.215 4.215 28 C -0.186 4.186 29 O -0.288 6.288 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.113 -8.833 -5.087 19.066 hybrid contribution 1.414 1.175 0.386 1.878 sum -14.699 -7.658 -4.701 17.228 Atomic orbital electron populations 1.21700 0.88953 1.04409 1.03768 1.22730 0.97724 0.94009 0.84643 0.94811 1.22954 0.78133 1.03276 1.00070 1.48122 1.07913 1.63613 1.15486 1.18664 0.85566 0.75553 0.84606 1.90771 1.17136 1.54752 1.83134 1.19078 1.06116 1.00487 0.98314 1.21224 0.91167 0.97564 0.95339 1.21177 1.04331 0.98828 0.96457 1.21442 0.92337 0.93217 0.99006 1.21306 1.03733 1.04919 0.96911 1.19937 0.87971 0.90815 0.91910 1.84044 1.45749 1.31612 1.50139 1.21974 1.14799 0.94700 1.18280 0.87404 1.26769 0.94509 1.04133 0.96752 1.70285 1.18409 1.40544 1.25834 0.84552 0.79525 0.74199 0.77662 1.18711 1.19766 1.16853 1.22259 0.99636 0.98533 0.82902 1.21795 0.81667 0.96865 0.93771 0.95262 1.22105 1.06390 0.99906 0.89090 1.23114 0.94031 1.01646 1.02706 1.22896 0.95661 1.02993 0.97035 1.87923 1.19923 1.77293 1.43618 0.89895 0.89146 0.91279 0.87494 0.88012 0.82992 0.81539 0.82565 0.85771 0.91958 0.91123 0.88299 0.85241 0.90423 0.86298 0.86200 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.57 71.98 0.69 -1.53 16 2 C 0.07 1.74 3.41 30.83 0.11 1.85 16 3 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.08 2.06 4.59 86.50 0.40 2.45 16 5 N -0.62 -22.56 3.01 -820.26 -2.47 -25.03 16 6 C 0.56 26.94 7.01 86.69 0.61 27.55 16 7 O -0.58 -34.45 15.89 7.09 0.11 -34.34 16 8 C -0.24 -10.38 4.90 -19.99 -0.10 -10.48 16 9 C -0.03 -1.07 7.55 22.52 0.17 -0.90 16 10 C -0.19 -4.91 10.02 22.25 0.22 -4.69 16 11 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 12 C -0.25 -10.47 9.12 22.36 0.20 -10.26 16 13 C 0.15 7.56 6.63 22.90 0.15 7.71 16 14 O -0.21 -13.45 8.73 -8.89 -0.08 -13.53 16 15 C -0.42 -25.36 9.43 67.93 0.64 -24.72 16 16 H 0.11 5.78 5.32 -2.91 -0.02 5.77 16 17 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 18 N -0.91 -59.83 13.67 21.62 0.30 -59.54 16 19 Si 1.02 44.02 29.55 68.60 2.03 46.05 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 23 C 0.09 2.95 5.93 86.36 0.51 3.47 16 24 C 0.12 3.52 2.97 30.70 0.09 3.61 16 25 H 0.03 1.07 7.90 -2.38 -0.02 1.05 16 26 C -0.16 -3.64 5.39 -10.80 -0.06 -3.70 16 27 C -0.18 -3.95 10.18 30.62 0.31 -3.63 16 28 C -0.15 -2.96 10.17 30.62 0.31 -2.65 16 29 O -0.37 -10.08 9.94 -148.98 -1.48 -11.57 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.10 2.74 5.28 -2.39 -0.01 2.73 16 35 H 0.15 3.58 7.17 -2.91 -0.02 3.56 16 36 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.12 5.28 5.73 -2.91 -0.02 5.27 16 39 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 40 H 0.07 2.79 7.06 -2.39 -0.02 2.78 16 41 H 0.10 2.66 8.13 -2.39 -0.02 2.64 16 42 H 0.13 2.54 8.10 -2.39 -0.02 2.52 16 43 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 44 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 45 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -87.43 376.83 4.34 -83.09 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.99 Total: 32.73 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.95 Total: -17.86 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.18 Total: -84.57 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -1.45 Total: -59.43 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -87.43 4.34 -83.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279315864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.288 kcal (2) G-P(sol) polarization free energy of solvation -87.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds