Wall clock time and date at job start Tue Mar 31 2020 17:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50839 * 2 1 4 4 C 1.53299 * 109.51412 * 239.89723 * 2 1 3 5 5 N 1.47155 * 108.38402 * 292.38144 * 4 2 1 6 6 C 1.34775 * 120.98465 * 129.48810 * 5 4 2 7 7 O 1.21590 * 119.99571 * 356.08664 * 6 5 4 8 8 C 1.47524 * 120.00099 * 176.08764 * 6 5 4 9 9 C 1.39671 * 120.19636 * 325.17062 * 8 6 5 10 10 C 1.37825 * 119.91719 * 180.02562 * 9 8 6 11 11 C 1.38577 * 120.32921 * 0.02562 * 10 9 8 12 12 C 1.38028 * 120.39484 * 0.02562 * 11 10 9 13 13 C 1.38831 * 120.07689 * 359.68223 * 12 11 10 14 14 O 1.35520 * 120.16475 * 180.29665 * 13 12 11 15 15 C 1.34814 * 117.00031 * 354.13058 * 14 13 12 16 16 H 1.07997 * 119.99661 * 355.45336 * 15 14 13 17 17 C 1.38695 * 119.99966 * 175.45353 * 15 14 13 18 18 N 1.31516 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47203 * 59.99876 * 19 17 15 21 21 H 1.48497 * 109.47246 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46751 * 300.00045 * 19 17 15 23 23 C 1.47157 * 118.03463 * 309.46163 * 5 4 2 24 24 C 1.53292 * 108.38136 * 50.53748 * 23 5 4 25 25 H 1.09002 * 109.51249 * 67.62646 * 24 23 5 26 26 C 1.53005 * 109.51047 * 187.72476 * 24 23 5 27 27 C 1.53003 * 117.49714 * 248.52269 * 26 24 23 28 28 C 1.52995 * 117.49862 * 179.90185 * 26 24 23 29 29 O 1.42959 * 109.51025 * 120.15180 * 2 1 3 30 30 H 1.09003 * 109.46576 * 180.10081 * 1 2 3 31 31 H 1.08999 * 109.47337 * 300.09755 * 1 2 3 32 32 H 1.09000 * 109.47008 * 60.10354 * 1 2 3 33 33 H 1.09001 * 109.67863 * 172.65309 * 4 2 1 34 34 H 1.08998 * 109.67922 * 52.10010 * 4 2 1 35 35 H 1.07992 * 120.04159 * 0.03142 * 9 8 6 36 36 H 1.08004 * 119.84022 * 180.02562 * 10 9 8 37 37 H 1.07994 * 119.80363 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.95988 * 179.97438 * 12 11 10 39 39 H 0.97007 * 120.00019 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.68048 * 290.81521 * 23 5 4 41 41 H 1.08998 * 109.67865 * 170.26417 * 23 5 4 42 42 H 1.09000 * 115.55217 * 34.22685 * 26 24 23 43 43 H 1.09003 * 117.49874 * 0.02562 * 27 26 24 44 44 H 1.08998 * 117.50088 * 145.01494 * 27 26 24 45 45 H 1.09002 * 117.49898 * 214.97153 * 28 26 24 46 46 H 1.09001 * 117.50146 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2501 5 7 1.6960 -2.1503 -1.1345 6 6 1.0717 -2.7963 -2.1392 7 8 0.7224 -2.1852 -3.1306 8 6 0.8120 -4.2449 -2.0359 9 6 1.7272 -5.0782 -1.3887 10 6 1.4791 -6.4308 -1.2961 11 6 0.3253 -6.9697 -1.8427 12 6 -0.5875 -6.1585 -2.4861 13 6 -0.3573 -4.7929 -2.5837 14 8 -1.2552 -3.9940 -3.2098 15 6 -2.2915 -4.6007 -3.8226 16 1 -2.3387 -5.6789 -3.8631 17 6 -3.2969 -3.8403 -4.4010 18 7 -3.2395 -2.5273 -4.3512 19 14 -4.7331 -4.6810 -5.2495 20 1 -5.4499 -5.5409 -4.2739 21 1 -5.6637 -3.6536 -5.7820 22 1 -4.2269 -5.5167 -6.3678 23 6 2.0522 -2.8499 0.1102 24 6 1.5396 -2.0216 1.2939 25 1 0.4496 -2.0290 1.2986 26 6 2.0604 -2.6220 2.6013 27 6 1.0400 -3.2803 3.5321 28 6 1.6576 -1.9313 3.9056 29 8 2.0075 -0.6768 1.1652 30 1 -0.3632 -1.0277 0.0018 31 1 -0.3634 0.5153 0.8891 32 1 -0.3633 0.5122 -0.8909 33 1 3.1242 -0.6141 -1.3210 34 1 1.5705 -0.3032 -2.1377 35 1 2.6280 -4.6632 -0.9614 36 1 2.1874 -7.0740 -0.7950 37 1 0.1393 -8.0306 -1.7648 38 1 -1.4842 -6.5860 -2.9099 39 1 -3.9429 -1.9954 -4.7554 40 1 3.1353 -2.9533 0.1761 41 1 1.5873 -3.8356 0.1231 42 1 3.0556 -3.0638 2.5522 43 1 -0.0022 -3.2860 3.2129 44 1 1.3638 -4.1554 4.0955 45 1 2.3878 -1.9190 4.7149 46 1 1.0220 -1.0488 3.8324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279315870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:26 Heat of formation + Delta-G solvation = -33.062239 kcal Electronic energy + Delta-G solvation = -29659.364954 eV Core-core repulsion = 25709.640834 eV Total energy + Delta-G solvation = -3949.724120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.49468 -39.19020 -37.84848 -36.80239 -36.41868 -34.32883 -32.38538 -32.31135 -30.42792 -29.10328 -28.81129 -26.42943 -25.40274 -24.28990 -22.96728 -22.39258 -21.74766 -21.07075 -19.99751 -19.02714 -18.09243 -17.21162 -16.68005 -16.41712 -16.05184 -15.52337 -14.99286 -14.89896 -14.75275 -14.50760 -14.25215 -13.92468 -13.76160 -13.66673 -13.61551 -12.96822 -12.74958 -12.54948 -12.35476 -11.94981 -11.81767 -11.73619 -11.63078 -11.33216 -11.32814 -11.24383 -11.05637 -10.88091 -10.82342 -10.64386 -10.50389 -10.45899 -10.10615 -9.81671 -9.63749 -9.00292 -8.89861 -8.27552 -8.11606 -7.36343 -6.49828 -4.09005 1.71226 2.25496 3.09270 3.11272 3.13812 3.20336 3.44344 3.58812 3.90362 4.02679 4.48663 4.53253 4.75394 4.84472 4.93399 5.03491 5.05920 5.06327 5.09968 5.13326 5.32548 5.35433 5.45575 5.47494 5.51170 5.55987 5.66358 5.77470 5.81136 5.85781 5.89151 5.96440 5.99993 6.02996 6.08003 6.11125 6.12153 6.39665 6.52103 6.60137 6.82733 6.91380 7.01174 7.20734 7.23702 7.24546 7.64405 7.82909 7.93096 8.90026 8.93436 9.61149 10.65140 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004123 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.260174 B = 6789.610034 C = 7656.926819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 H 0.110 0.890 4 C 0.086 3.914 5 N -0.621 5.621 6 C 0.571 3.429 7 O -0.508 6.508 8 C -0.224 4.224 9 C -0.047 4.047 10 C -0.228 4.228 11 C -0.052 4.052 12 C -0.236 4.236 13 C 0.190 3.810 14 O -0.138 6.138 15 C -0.400 4.400 16 H 0.094 0.906 17 C 0.045 3.955 18 N -0.840 5.840 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.268 1.268 23 C 0.075 3.925 24 C 0.103 3.897 25 H 0.069 0.931 26 C -0.147 4.147 27 C -0.172 4.172 28 C -0.165 4.165 29 O -0.371 6.371 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -0.732 13.225 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.019 3.981 3 H 0.128 0.872 4 C -0.037 4.037 5 N -0.358 5.358 6 C 0.361 3.639 7 O -0.383 6.383 8 C -0.229 4.229 9 C -0.066 4.066 10 C -0.247 4.247 11 C -0.070 4.070 12 C -0.255 4.255 13 C 0.131 3.869 14 O -0.037 6.037 15 C -0.476 4.476 16 H 0.111 0.889 17 C -0.163 4.163 18 N -0.472 5.472 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.048 4.048 24 C 0.044 3.956 25 H 0.086 0.914 26 C -0.166 4.166 27 C -0.209 4.209 28 C -0.202 4.202 29 O -0.291 6.291 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.998 0.186 12.629 15.508 hybrid contribution -0.832 -0.657 -0.570 1.204 sum 8.166 -0.471 12.059 14.571 Atomic orbital electron populations 1.22351 0.95571 1.03416 1.02586 1.22572 0.94362 0.96171 0.85040 0.87244 1.22182 1.00091 0.81800 0.99650 1.47952 1.61382 1.10023 1.16430 1.18241 0.76349 0.87045 0.82222 1.90840 1.49085 1.67956 1.30370 1.18729 0.98167 0.92628 1.13365 1.20988 0.97072 0.93469 0.95050 1.20486 1.00067 0.94688 1.09432 1.20906 0.93183 0.98491 0.94433 1.21151 1.02757 0.93334 1.08262 1.19228 0.88992 0.89635 0.89073 1.84073 1.30586 1.33029 1.55978 1.21395 0.99671 0.92562 1.33934 0.88895 1.25361 0.98305 0.95503 0.97091 1.70077 1.32850 1.04270 1.40001 0.85779 0.79552 0.78665 0.79439 1.19371 1.20142 1.19308 1.22799 1.00456 0.98070 0.83512 1.22016 0.98213 0.82566 0.92762 0.91352 1.22089 1.00009 1.04352 0.90106 1.23031 0.98509 0.96712 1.02674 1.22811 1.03571 0.96243 0.97565 1.87962 1.72364 1.25178 1.43547 0.91722 0.92189 0.90990 0.91411 0.88046 0.86145 0.87130 0.87120 0.85050 0.91770 0.91221 0.86982 0.87140 0.88535 0.88321 0.88819 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.81 37.16 0.33 -2.36 16 2 C 0.08 1.03 3.93 -26.57 -0.10 0.93 16 3 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.09 1.31 6.03 -3.53 -0.02 1.29 16 5 N -0.62 -10.78 2.54 -173.50 -0.44 -11.22 16 6 C 0.57 12.70 7.27 -12.48 -0.09 12.61 16 7 O -0.51 -13.71 15.41 -12.45 -0.19 -13.91 16 8 C -0.22 -4.86 5.35 -104.81 -0.56 -5.42 16 9 C -0.05 -0.81 7.37 -39.20 -0.29 -1.10 16 10 C -0.23 -3.64 10.02 -39.61 -0.40 -4.04 16 11 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 12 C -0.24 -4.98 9.13 -39.44 -0.36 -5.34 16 13 C 0.19 4.65 6.62 -38.60 -0.26 4.39 16 14 O -0.14 -4.01 8.40 -16.94 -0.14 -4.15 16 15 C -0.40 -11.21 9.45 30.90 0.29 -10.92 16 16 H 0.09 2.36 5.28 -52.49 -0.28 2.09 16 17 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 18 N -0.84 -24.99 13.67 55.48 0.76 -24.23 16 19 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 23 C 0.07 1.05 4.22 -3.53 -0.01 1.03 16 24 C 0.10 1.34 2.58 -26.58 -0.07 1.28 16 25 H 0.07 1.00 6.01 -51.93 -0.31 0.69 16 26 C -0.15 -1.56 5.40 -90.62 -0.49 -2.04 16 27 C -0.17 -1.64 10.18 -26.73 -0.27 -1.91 16 28 C -0.16 -1.58 10.16 -26.73 -0.27 -1.86 16 29 O -0.37 -5.07 10.14 -35.23 -0.36 -5.43 16 30 H 0.06 1.12 6.11 -51.93 -0.32 0.81 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.74 7.06 -51.93 -0.37 1.38 16 35 H 0.12 1.72 5.86 -52.49 -0.31 1.41 16 36 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 2.74 5.71 -52.49 -0.30 2.44 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 41 H 0.11 1.61 4.53 -51.93 -0.24 1.38 16 42 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 43 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -33.67 369.17 -9.21 -42.88 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.31 Total: 8.76 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -3.07 Total: -13.61 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.32 Total: -35.45 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.69 Total: -23.49 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.67 -9.21 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279315870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.816 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds