Wall clock time and date at job start Tue Mar 31 2020 17:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50839 * 2 1 4 4 C 1.53299 * 109.51412 * 239.89723 * 2 1 3 5 5 N 1.47155 * 108.38402 * 292.38144 * 4 2 1 6 6 C 1.34775 * 120.98465 * 129.48810 * 5 4 2 7 7 O 1.21590 * 119.99571 * 356.08664 * 6 5 4 8 8 C 1.47524 * 120.00099 * 176.08764 * 6 5 4 9 9 C 1.39671 * 120.19636 * 325.17062 * 8 6 5 10 10 C 1.37825 * 119.91719 * 180.02562 * 9 8 6 11 11 C 1.38577 * 120.32921 * 0.02562 * 10 9 8 12 12 C 1.38028 * 120.39484 * 0.02562 * 11 10 9 13 13 C 1.38831 * 120.07689 * 359.68223 * 12 11 10 14 14 O 1.35520 * 120.16475 * 180.29665 * 13 12 11 15 15 C 1.34814 * 117.00031 * 354.13058 * 14 13 12 16 16 H 1.07997 * 119.99661 * 355.45336 * 15 14 13 17 17 C 1.38695 * 119.99966 * 175.45353 * 15 14 13 18 18 N 1.31516 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47203 * 59.99876 * 19 17 15 21 21 H 1.48497 * 109.47246 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46751 * 300.00045 * 19 17 15 23 23 C 1.47157 * 118.03463 * 309.46163 * 5 4 2 24 24 C 1.53292 * 108.38136 * 50.53748 * 23 5 4 25 25 H 1.09002 * 109.51249 * 67.62646 * 24 23 5 26 26 C 1.53005 * 109.51047 * 187.72476 * 24 23 5 27 27 C 1.53003 * 117.49714 * 248.52269 * 26 24 23 28 28 C 1.52995 * 117.49862 * 179.90185 * 26 24 23 29 29 O 1.42959 * 109.51025 * 120.15180 * 2 1 3 30 30 H 1.09003 * 109.46576 * 180.10081 * 1 2 3 31 31 H 1.08999 * 109.47337 * 300.09755 * 1 2 3 32 32 H 1.09000 * 109.47008 * 60.10354 * 1 2 3 33 33 H 1.09001 * 109.67863 * 172.65309 * 4 2 1 34 34 H 1.08998 * 109.67922 * 52.10010 * 4 2 1 35 35 H 1.07992 * 120.04159 * 0.03142 * 9 8 6 36 36 H 1.08004 * 119.84022 * 180.02562 * 10 9 8 37 37 H 1.07994 * 119.80363 * 180.02562 * 11 10 9 38 38 H 1.08001 * 119.95988 * 179.97438 * 12 11 10 39 39 H 0.97007 * 120.00019 * 180.02562 * 18 17 15 40 40 H 1.09007 * 109.68048 * 290.81521 * 23 5 4 41 41 H 1.08998 * 109.67865 * 170.26417 * 23 5 4 42 42 H 1.09000 * 115.55217 * 34.22685 * 26 24 23 43 43 H 1.09003 * 117.49874 * 0.02562 * 27 26 24 44 44 H 1.08998 * 117.50088 * 145.01494 * 27 26 24 45 45 H 1.09002 * 117.49898 * 214.97153 * 28 26 24 46 46 H 1.09001 * 117.50146 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2501 5 7 1.6960 -2.1503 -1.1345 6 6 1.0717 -2.7963 -2.1392 7 8 0.7224 -2.1852 -3.1306 8 6 0.8120 -4.2449 -2.0359 9 6 1.7272 -5.0782 -1.3887 10 6 1.4791 -6.4308 -1.2961 11 6 0.3253 -6.9697 -1.8427 12 6 -0.5875 -6.1585 -2.4861 13 6 -0.3573 -4.7929 -2.5837 14 8 -1.2552 -3.9940 -3.2098 15 6 -2.2915 -4.6007 -3.8226 16 1 -2.3387 -5.6789 -3.8631 17 6 -3.2969 -3.8403 -4.4010 18 7 -3.2395 -2.5273 -4.3512 19 14 -4.7331 -4.6810 -5.2495 20 1 -5.4499 -5.5409 -4.2739 21 1 -5.6637 -3.6536 -5.7820 22 1 -4.2269 -5.5167 -6.3678 23 6 2.0522 -2.8499 0.1102 24 6 1.5396 -2.0216 1.2939 25 1 0.4496 -2.0290 1.2986 26 6 2.0604 -2.6220 2.6013 27 6 1.0400 -3.2803 3.5321 28 6 1.6576 -1.9313 3.9056 29 8 2.0075 -0.6768 1.1652 30 1 -0.3632 -1.0277 0.0018 31 1 -0.3634 0.5153 0.8891 32 1 -0.3633 0.5122 -0.8909 33 1 3.1242 -0.6141 -1.3210 34 1 1.5705 -0.3032 -2.1377 35 1 2.6280 -4.6632 -0.9614 36 1 2.1874 -7.0740 -0.7950 37 1 0.1393 -8.0306 -1.7648 38 1 -1.4842 -6.5860 -2.9099 39 1 -3.9429 -1.9954 -4.7554 40 1 3.1353 -2.9533 0.1761 41 1 1.5873 -3.8356 0.1231 42 1 3.0556 -3.0638 2.5522 43 1 -0.0022 -3.2860 3.2129 44 1 1.3638 -4.1554 4.0955 45 1 2.3878 -1.9190 4.7149 46 1 1.0220 -1.0488 3.8324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279315870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:26 Heat of formation + Delta-G solvation = -54.328094 kcal Electronic energy + Delta-G solvation = -29660.287111 eV Core-core repulsion = 25709.640834 eV Total energy + Delta-G solvation = -3950.646277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90105 -40.70469 -39.40062 -38.15544 -37.70785 -35.79795 -34.35797 -33.51055 -31.92600 -30.68505 -30.07570 -27.88833 -27.29158 -25.47475 -24.42323 -23.30183 -23.15548 -22.29013 -21.14693 -20.45805 -19.90238 -18.81350 -18.17426 -17.65827 -17.33049 -16.87294 -16.52397 -16.41153 -16.00771 -15.83348 -15.70865 -15.51684 -15.28496 -15.08009 -14.84754 -14.54709 -14.21576 -14.18916 -13.61122 -13.55176 -13.31657 -13.11145 -12.90811 -12.67452 -12.48245 -12.42219 -12.35241 -12.33944 -12.25474 -12.16226 -11.68651 -11.48859 -11.32331 -11.16605 -10.95274 -10.84176 -10.65779 -9.83159 -9.50053 -9.06592 -8.49114 -6.19063 0.13843 0.68002 1.30442 1.43175 1.48186 1.77642 2.00512 2.13734 2.43903 2.80744 3.13386 3.16464 3.38737 3.52520 3.59974 3.70152 3.91096 3.96678 4.01156 4.07392 4.15051 4.19045 4.24694 4.28669 4.31033 4.46838 4.49010 4.54207 4.62577 4.65333 4.73101 4.78095 4.84907 4.87935 4.92985 5.04434 5.08701 5.08954 5.10403 5.29407 5.32644 5.44062 5.50171 5.58728 5.67573 5.92361 6.11036 6.14041 6.34305 6.91640 7.26678 7.74856 8.72266 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004123 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.260174 B = 6789.610034 C = 7656.926819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.144 0.856 4 C 0.080 3.920 5 N -0.612 5.612 6 C 0.561 3.439 7 O -0.575 6.575 8 C -0.241 4.241 9 C -0.040 4.040 10 C -0.194 4.194 11 C -0.040 4.040 12 C -0.253 4.253 13 C 0.149 3.851 14 O -0.203 6.203 15 C -0.423 4.423 16 H 0.107 0.893 17 C -0.022 4.022 18 N -0.911 5.911 19 Si 1.021 2.979 20 H -0.251 1.251 21 H -0.273 1.273 22 H -0.256 1.256 23 C 0.071 3.929 24 C 0.104 3.896 25 H 0.043 0.957 26 C -0.152 4.152 27 C -0.169 4.169 28 C -0.162 4.162 29 O -0.367 6.367 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 -3.748 16.363 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.161 0.839 4 C -0.043 4.043 5 N -0.347 5.347 6 C 0.352 3.648 7 O -0.454 6.454 8 C -0.245 4.245 9 C -0.058 4.058 10 C -0.212 4.212 11 C -0.058 4.058 12 C -0.272 4.272 13 C 0.094 3.906 14 O -0.106 6.106 15 C -0.499 4.499 16 H 0.124 0.876 17 C -0.221 4.221 18 N -0.547 5.547 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.051 4.051 24 C 0.045 3.955 25 H 0.061 0.939 26 C -0.170 4.170 27 C -0.206 4.206 28 C -0.199 4.199 29 O -0.285 6.285 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.142 0.858 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.178 -2.880 15.860 20.203 hybrid contribution -1.440 0.129 -1.259 1.917 sum 10.739 -2.752 14.601 18.332 Atomic orbital electron populations 1.22314 0.97271 1.01214 1.02727 1.22594 0.92860 0.97566 0.84194 0.83885 1.22388 1.01539 0.80749 0.99606 1.47982 1.59471 1.10893 1.16337 1.18577 0.76131 0.87667 0.82379 1.90803 1.52004 1.69262 1.33363 1.19146 0.98354 0.93156 1.13866 1.21447 0.96993 0.93812 0.93534 1.21194 0.99535 0.94436 1.06036 1.21443 0.92158 1.00249 0.91998 1.21306 1.03973 0.92409 1.09545 1.19986 0.89477 0.91214 0.89892 1.84064 1.32392 1.34842 1.59316 1.21932 0.99981 0.93373 1.34588 0.87612 1.26729 1.01427 0.96114 0.97781 1.70269 1.34605 1.06458 1.43365 0.84628 0.75299 0.77607 0.78498 1.17486 1.19793 1.18067 1.23089 1.02388 0.97755 0.81853 1.22021 0.96988 0.82417 0.94033 0.93918 1.22114 1.01126 1.05029 0.88747 1.23096 0.97601 0.97633 1.02305 1.22873 1.03669 0.95793 0.97524 1.87982 1.72016 1.25446 1.43099 0.95104 0.90260 0.92571 0.88473 0.90968 0.82353 0.81525 0.82632 0.85841 0.91987 0.87736 0.87215 0.84887 0.90057 0.86104 0.86746 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 8.81 71.98 0.63 -4.94 16 2 C 0.09 2.26 3.93 30.70 0.12 2.38 16 3 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 4 C 0.08 2.47 6.03 86.35 0.52 2.99 16 5 N -0.61 -21.45 2.54 -821.09 -2.08 -23.54 16 6 C 0.56 26.35 7.27 86.69 0.63 26.98 16 7 O -0.57 -34.00 15.41 12.96 0.20 -33.80 16 8 C -0.24 -10.62 5.35 -19.99 -0.11 -10.73 16 9 C -0.04 -1.23 7.37 22.52 0.17 -1.06 16 10 C -0.19 -5.06 10.02 22.25 0.22 -4.84 16 11 C -0.04 -1.23 10.03 22.30 0.22 -1.00 16 12 C -0.25 -10.72 9.13 22.36 0.20 -10.52 16 13 C 0.15 7.67 6.62 22.91 0.15 7.82 16 14 O -0.20 -12.92 8.40 -3.10 -0.03 -12.94 16 15 C -0.42 -25.60 9.45 67.93 0.64 -24.96 16 16 H 0.11 5.74 5.28 -2.91 -0.02 5.72 16 17 C -0.02 -1.29 5.49 84.85 0.47 -0.83 16 18 N -0.91 -59.34 13.67 21.62 0.30 -59.04 16 19 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 C 0.07 1.81 4.22 86.35 0.36 2.17 16 24 C 0.10 2.54 2.58 30.69 0.08 2.62 16 25 H 0.04 1.28 6.01 -2.39 -0.01 1.26 16 26 C -0.15 -2.69 5.40 -10.79 -0.06 -2.75 16 27 C -0.17 -2.75 10.18 30.59 0.31 -2.44 16 28 C -0.16 -2.63 10.16 30.59 0.31 -2.32 16 29 O -0.37 -9.24 10.14 -148.98 -1.51 -10.75 16 30 H 0.03 1.15 6.11 -2.39 -0.01 1.14 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.69 7.06 -2.39 -0.02 2.68 16 35 H 0.16 3.67 5.86 -2.91 -0.02 3.65 16 36 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.12 5.31 5.71 -2.91 -0.02 5.29 16 39 H 0.27 16.22 8.31 -92.70 -0.77 15.45 16 40 H 0.10 2.03 7.97 -2.38 -0.02 2.01 16 41 H 0.11 2.86 4.53 -2.39 -0.01 2.85 16 42 H 0.13 1.81 8.10 -2.39 -0.02 1.79 16 43 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 44 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -86.64 369.17 4.79 -81.85 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 1.00 Total: 33.40 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.88 Total: -21.41 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.79 Total: -82.58 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -1.34 Total: -57.49 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -86.64 4.79 -81.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279315870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.521 kcal (2) G-P(sol) polarization free energy of solvation -86.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds