Wall clock time and date at job start Tue Mar 31 2020 17:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.90019 * 2 1 4 4 O 1.43883 * 110.06889 * 121.19064 * 2 1 3 5 5 C 1.44420 * 106.99764 * 145.84891 * 4 2 1 6 6 C 1.55110 * 103.56540 * 320.26404 * 5 4 2 7 7 C 1.53583 * 109.90877 * 238.91609 * 2 1 3 8 8 C 1.52205 * 110.18475 * 356.60141 * 7 2 1 9 9 N 1.47276 * 108.63047 * 72.33207 * 8 7 2 10 10 C 1.34775 * 121.04130 * 229.52924 * 9 8 7 11 11 O 1.21546 * 120.00172 * 355.34187 * 10 9 8 12 12 C 1.47891 * 120.00014 * 175.34813 * 10 9 8 13 13 C 1.39923 * 120.02158 * 220.39650 * 12 10 9 14 14 C 1.38328 * 120.35292 * 179.72071 * 13 12 10 15 15 C 1.37746 * 120.41570 * 0.02562 * 14 13 12 16 16 C 1.40749 * 120.03825 * 0.02562 * 15 14 13 17 17 C 1.41446 * 120.17646 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99591 * 205.42147 * 17 16 15 19 19 C 1.39930 * 119.99832 * 25.41571 * 17 16 15 20 20 N 1.30827 * 120.00482 * 14.27745 * 19 17 16 21 21 Si 1.86798 * 119.99921 * 194.27440 * 19 17 16 22 22 H 1.48503 * 109.47251 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47519 * 120.00010 * 21 19 17 24 24 H 1.48502 * 109.47387 * 240.00539 * 21 19 17 25 25 C 1.38988 * 120.02374 * 40.11971 * 12 10 9 26 26 C 1.47163 * 117.91379 * 49.25435 * 9 8 7 27 27 C 1.53280 * 108.50253 * 309.23180 * 26 9 8 28 28 O 1.42240 * 110.61654 * 119.55415 * 7 2 1 29 29 H 1.09000 * 109.47242 * 174.72924 * 1 2 3 30 30 H 1.08997 * 109.47120 * 294.72847 * 1 2 3 31 31 H 1.08997 * 109.47264 * 54.72705 * 1 2 3 32 32 H 1.09007 * 110.60460 * 78.78260 * 5 4 2 33 33 H 1.08995 * 110.60826 * 201.58543 * 5 4 2 34 34 H 1.08995 * 110.92883 * 278.41709 * 6 5 4 35 35 H 1.08997 * 110.93352 * 154.74558 * 6 5 4 36 36 H 1.08994 * 109.62378 * 312.49856 * 8 7 2 37 37 H 1.09007 * 109.50793 * 192.09270 * 8 7 2 38 38 H 1.07993 * 119.82214 * 359.70294 * 13 12 10 39 39 H 1.08004 * 119.79001 * 180.02562 * 14 13 12 40 40 H 1.08007 * 119.97946 * 179.97438 * 15 14 13 41 41 H 0.97003 * 120.00513 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.20628 * 0.25543 * 25 12 10 43 43 H 1.08995 * 109.62947 * 68.94228 * 26 9 8 44 44 H 1.09002 * 109.62847 * 189.33080 * 26 9 8 45 45 H 1.09003 * 109.50149 * 172.73353 * 27 26 9 46 46 H 1.08991 * 109.51455 * 292.87226 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0238 -0.6999 1.1561 5 6 3.2422 -1.3654 0.7583 6 6 2.9239 -1.8851 -0.6681 7 6 2.0530 -0.7455 -1.2367 8 6 0.8910 -1.3237 -2.0317 9 7 0.1852 -0.2196 -2.7038 10 6 -1.1544 -0.0976 -2.6194 11 8 -1.8080 -0.9517 -2.0531 12 6 -1.8291 1.0754 -3.2160 13 6 -2.8863 1.6940 -2.5395 14 6 -3.5185 2.7951 -3.0885 15 6 -3.1154 3.2950 -4.3071 16 6 -2.0546 2.6853 -5.0028 17 6 -1.6386 3.1959 -6.2546 18 1 -1.1487 2.5479 -6.9662 19 6 -1.8621 4.5405 -6.5709 20 7 -2.1925 5.3877 -5.6303 21 14 -1.6885 5.1260 -8.3362 22 1 -1.3098 3.9809 -9.2026 23 1 -2.9813 5.6906 -8.8000 24 1 -0.6368 6.1719 -8.4098 25 6 -1.4098 1.5676 -4.4463 26 6 0.9890 0.7498 -3.4652 27 6 2.1307 1.2446 -2.5701 28 8 2.8410 0.1186 -2.0464 29 1 -0.3634 -1.0233 -0.0944 30 1 -0.3633 0.4299 0.9334 31 1 -0.3633 0.5934 -0.8390 32 1 4.0735 -0.6608 0.7332 33 1 3.4637 -2.1942 1.4306 34 1 2.3639 -2.8193 -0.6261 35 1 3.8367 -2.0057 -1.2513 36 1 0.2075 -1.8401 -1.3579 37 1 1.2716 -2.0231 -2.7762 38 1 -3.2105 1.3096 -1.5838 39 1 -4.3332 3.2658 -2.5583 40 1 -3.6143 4.1549 -4.7295 41 1 -2.3471 6.3199 -5.8496 42 1 -0.5941 1.0935 -4.9718 43 1 1.4012 0.2676 -4.3516 44 1 0.3628 1.5906 -3.7635 45 1 2.8104 1.8634 -3.1560 46 1 1.7207 1.8310 -1.7479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279471173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:25 Heat of formation + Delta-G solvation = -71.120349 kcal Electronic energy + Delta-G solvation = -30000.457701 eV Core-core repulsion = 26049.083257 eV Total energy + Delta-G solvation = -3951.374443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35086 -39.25036 -37.56486 -37.14306 -34.63650 -33.81789 -32.86565 -31.58483 -30.09981 -29.90360 -28.94134 -26.87382 -25.50743 -24.98112 -23.25807 -22.59524 -21.88041 -20.94558 -19.97860 -18.91406 -17.56854 -17.45064 -16.44983 -16.04998 -15.69072 -15.61617 -15.40983 -15.20080 -15.00330 -14.67546 -14.44367 -14.07399 -13.88488 -13.43825 -13.05126 -13.01520 -12.78800 -12.62237 -12.25249 -12.06333 -11.84208 -11.72343 -11.60119 -11.43852 -11.30449 -11.29820 -11.14810 -10.90960 -10.83396 -10.57346 -10.42752 -10.34206 -10.05748 -9.68635 -9.62423 -9.36266 -9.12014 -8.30996 -7.68516 -7.60475 -6.89585 -4.55913 2.18100 2.61706 2.99376 3.03254 3.04884 3.11643 3.46511 3.51887 3.81402 3.82190 4.33546 4.46311 4.50733 4.57652 4.92212 4.95924 5.08715 5.10317 5.18148 5.35568 5.40746 5.42690 5.47312 5.48641 5.59664 5.63144 5.68840 5.77092 5.85098 5.94589 6.04485 6.07633 6.09735 6.28053 6.41440 6.61177 6.66508 6.76380 6.81709 6.92640 7.07289 7.10397 7.23995 7.50360 7.66644 7.80003 7.84296 8.00015 8.40885 8.59920 8.69268 8.72135 10.03826 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003533 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.427938 B = 7923.155303 C = 8638.261682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.057 3.943 3 H 0.074 0.926 4 O -0.371 6.371 5 C 0.048 3.952 6 C -0.140 4.140 7 C 0.078 3.922 8 C 0.093 3.907 9 N -0.615 5.615 10 C 0.574 3.426 11 O -0.548 6.548 12 C -0.113 4.113 13 C -0.180 4.180 14 C -0.112 4.112 15 C -0.137 4.137 16 C 0.103 3.897 17 C -0.461 4.461 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.204 4.204 26 C 0.049 3.951 27 C 0.042 3.958 28 O -0.366 6.366 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.282 0.718 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.110 0.890 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -6.660 5.668 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.001 4.001 3 H 0.092 0.908 4 O -0.290 6.290 5 C -0.029 4.029 6 C -0.178 4.178 7 C 0.037 3.963 8 C -0.030 4.030 9 N -0.350 5.350 10 C 0.367 3.633 11 O -0.426 6.426 12 C -0.116 4.116 13 C -0.200 4.200 14 C -0.131 4.131 15 C -0.156 4.156 16 C 0.100 3.900 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.142 4.142 20 N -0.421 5.421 21 Si 0.734 3.266 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.224 4.224 26 C -0.074 4.074 27 C -0.034 4.034 28 O -0.285 6.285 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.156 0.844 45 H 0.128 0.872 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.434 -6.895 6.159 13.209 hybrid contribution 0.059 0.554 -1.013 1.156 sum 9.493 -6.341 5.146 12.522 Atomic orbital electron populations 1.22426 0.92367 1.04048 1.03087 1.23279 0.96171 0.96011 0.84630 0.90838 1.88935 1.39464 1.67687 1.32950 1.23548 0.88159 0.96564 0.94609 1.23054 1.00935 0.97111 0.96722 1.22604 0.91686 0.91163 0.90851 1.22054 0.93876 0.89960 0.97096 1.48140 1.06365 1.27936 1.52523 1.18854 0.80520 0.86164 0.77757 1.90689 1.64381 1.42791 1.44761 1.19246 0.99028 0.95973 0.97349 1.20362 0.99425 0.99458 1.00766 1.20692 0.99332 0.96324 0.96712 1.21632 0.97437 1.01527 0.95027 1.17546 0.89627 0.90240 0.92552 1.19600 1.34389 0.94642 1.00405 0.90215 1.25896 0.92486 0.96735 0.99117 1.69777 1.34105 1.04513 1.33711 0.86229 0.78802 0.79351 0.82211 1.18377 1.19684 1.19901 1.21305 1.02625 1.02475 0.96002 1.23206 0.94229 0.95701 0.94220 1.23141 0.94915 0.88041 0.97351 1.87856 1.36464 1.37335 1.66825 0.90652 0.92245 0.90006 0.91888 0.88747 0.88936 0.88682 0.87310 0.91117 0.88495 0.88553 0.85640 0.90728 0.87463 0.90820 0.84364 0.87219 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 7.55 37.16 0.28 -2.27 16 2 C 0.06 0.80 3.24 -26.43 -0.09 0.72 16 3 H 0.07 1.06 6.66 -51.93 -0.35 0.72 16 4 O -0.37 -5.16 11.20 -35.23 -0.39 -5.55 16 5 C 0.05 0.49 7.73 38.27 0.30 0.79 16 6 C -0.14 -1.42 6.44 -24.94 -0.16 -1.58 16 7 C 0.08 1.01 0.97 -90.05 -0.09 0.92 16 8 C 0.09 1.33 4.59 -4.02 -0.02 1.31 16 9 N -0.62 -10.10 2.01 -173.93 -0.35 -10.45 16 10 C 0.57 11.37 4.84 -12.31 -0.06 11.31 16 11 O -0.55 -11.93 15.26 5.33 0.08 -11.85 16 12 C -0.11 -2.43 5.36 -105.04 -0.56 -2.99 16 13 C -0.18 -3.94 9.64 -38.92 -0.38 -4.31 16 14 C -0.11 -2.47 10.01 -39.73 -0.40 -2.87 16 15 C -0.14 -3.27 8.68 -38.81 -0.34 -3.61 16 16 C 0.10 2.48 5.57 -106.87 -0.60 1.88 16 17 C -0.46 -11.07 9.06 -37.73 -0.34 -11.41 16 18 H 0.08 1.84 7.89 -52.49 -0.41 1.43 16 19 C 0.08 1.73 5.21 -17.35 -0.09 1.64 16 20 N -0.80 -18.89 10.80 55.55 0.60 -18.29 16 21 Si 0.91 17.34 29.58 -169.99 -5.03 12.31 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.20 -4.46 7.09 -38.45 -0.27 -4.73 16 26 C 0.05 0.73 5.19 -3.54 -0.02 0.71 16 27 C 0.04 0.56 6.70 37.30 0.25 0.81 16 28 O -0.37 -4.91 10.17 -35.23 -0.36 -5.27 16 29 H 0.07 1.23 5.30 -51.93 -0.28 0.96 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.43 4.50 -51.93 -0.23 1.19 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.83 7.84 -51.93 -0.41 0.42 16 35 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.11 1.65 4.98 -51.93 -0.26 1.39 16 37 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.13 3.10 6.08 -52.48 -0.32 2.79 16 41 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 42 H 0.11 2.15 6.01 -52.49 -0.32 1.84 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.14 2.36 4.06 -51.93 -0.21 2.15 16 45 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -27.22 349.42 -8.82 -36.03 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.06 Total: 11.49 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.58 Total: -13.70 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: 0.25 Total: -28.73 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.67 Total: -22.66 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.22 -8.82 -36.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279471173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.087 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds