Wall clock time and date at job start Tue Mar 31 2020 17:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.90019 * 2 1 4 4 O 1.43883 * 110.06889 * 121.19064 * 2 1 3 5 5 C 1.44420 * 106.99764 * 145.84891 * 4 2 1 6 6 C 1.55110 * 103.56540 * 320.26404 * 5 4 2 7 7 C 1.53583 * 109.90877 * 238.91609 * 2 1 3 8 8 C 1.52205 * 110.18475 * 356.60141 * 7 2 1 9 9 N 1.47276 * 108.63047 * 72.33207 * 8 7 2 10 10 C 1.34775 * 121.04130 * 229.52924 * 9 8 7 11 11 O 1.21546 * 120.00172 * 355.34187 * 10 9 8 12 12 C 1.47891 * 120.00014 * 175.34813 * 10 9 8 13 13 C 1.39923 * 120.02158 * 220.39650 * 12 10 9 14 14 C 1.38328 * 120.35292 * 179.72071 * 13 12 10 15 15 C 1.37746 * 120.41570 * 0.02562 * 14 13 12 16 16 C 1.40749 * 120.03825 * 0.02562 * 15 14 13 17 17 C 1.41446 * 120.17646 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99591 * 205.42147 * 17 16 15 19 19 C 1.39930 * 119.99832 * 25.41571 * 17 16 15 20 20 N 1.30827 * 120.00482 * 14.27745 * 19 17 16 21 21 Si 1.86798 * 119.99921 * 194.27440 * 19 17 16 22 22 H 1.48503 * 109.47251 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47519 * 120.00010 * 21 19 17 24 24 H 1.48502 * 109.47387 * 240.00539 * 21 19 17 25 25 C 1.38988 * 120.02374 * 40.11971 * 12 10 9 26 26 C 1.47163 * 117.91379 * 49.25435 * 9 8 7 27 27 C 1.53280 * 108.50253 * 309.23180 * 26 9 8 28 28 O 1.42240 * 110.61654 * 119.55415 * 7 2 1 29 29 H 1.09000 * 109.47242 * 174.72924 * 1 2 3 30 30 H 1.08997 * 109.47120 * 294.72847 * 1 2 3 31 31 H 1.08997 * 109.47264 * 54.72705 * 1 2 3 32 32 H 1.09007 * 110.60460 * 78.78260 * 5 4 2 33 33 H 1.08995 * 110.60826 * 201.58543 * 5 4 2 34 34 H 1.08995 * 110.92883 * 278.41709 * 6 5 4 35 35 H 1.08997 * 110.93352 * 154.74558 * 6 5 4 36 36 H 1.08994 * 109.62378 * 312.49856 * 8 7 2 37 37 H 1.09007 * 109.50793 * 192.09270 * 8 7 2 38 38 H 1.07993 * 119.82214 * 359.70294 * 13 12 10 39 39 H 1.08004 * 119.79001 * 180.02562 * 14 13 12 40 40 H 1.08007 * 119.97946 * 179.97438 * 15 14 13 41 41 H 0.97003 * 120.00513 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.20628 * 0.25543 * 25 12 10 43 43 H 1.08995 * 109.62947 * 68.94228 * 26 9 8 44 44 H 1.09002 * 109.62847 * 189.33080 * 26 9 8 45 45 H 1.09003 * 109.50149 * 172.73353 * 27 26 9 46 46 H 1.08991 * 109.51455 * 292.87226 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0238 -0.6999 1.1561 5 6 3.2422 -1.3654 0.7583 6 6 2.9239 -1.8851 -0.6681 7 6 2.0530 -0.7455 -1.2367 8 6 0.8910 -1.3237 -2.0317 9 7 0.1852 -0.2196 -2.7038 10 6 -1.1544 -0.0976 -2.6194 11 8 -1.8080 -0.9517 -2.0531 12 6 -1.8291 1.0754 -3.2160 13 6 -2.8863 1.6940 -2.5395 14 6 -3.5185 2.7951 -3.0885 15 6 -3.1154 3.2950 -4.3071 16 6 -2.0546 2.6853 -5.0028 17 6 -1.6386 3.1959 -6.2546 18 1 -1.1487 2.5479 -6.9662 19 6 -1.8621 4.5405 -6.5709 20 7 -2.1925 5.3877 -5.6303 21 14 -1.6885 5.1260 -8.3362 22 1 -1.3098 3.9809 -9.2026 23 1 -2.9813 5.6906 -8.8000 24 1 -0.6368 6.1719 -8.4098 25 6 -1.4098 1.5676 -4.4463 26 6 0.9890 0.7498 -3.4652 27 6 2.1307 1.2446 -2.5701 28 8 2.8410 0.1186 -2.0464 29 1 -0.3634 -1.0233 -0.0944 30 1 -0.3633 0.4299 0.9334 31 1 -0.3633 0.5934 -0.8390 32 1 4.0735 -0.6608 0.7332 33 1 3.4637 -2.1942 1.4306 34 1 2.3639 -2.8193 -0.6261 35 1 3.8367 -2.0057 -1.2513 36 1 0.2075 -1.8401 -1.3579 37 1 1.2716 -2.0231 -2.7762 38 1 -3.2105 1.3096 -1.5838 39 1 -4.3332 3.2658 -2.5583 40 1 -3.6143 4.1549 -4.7295 41 1 -2.3471 6.3199 -5.8496 42 1 -0.5941 1.0935 -4.9718 43 1 1.4012 0.2676 -4.3516 44 1 0.3628 1.5906 -3.7635 45 1 2.8104 1.8634 -3.1560 46 1 1.7207 1.8310 -1.7479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279471173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:24 Heat of formation + Delta-G solvation = -86.025817 kcal Electronic energy + Delta-G solvation = -30001.104050 eV Core-core repulsion = 26049.083257 eV Total energy + Delta-G solvation = -3952.020793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53923 -40.63977 -38.93488 -38.59563 -35.97790 -35.54757 -34.00544 -32.61704 -31.84885 -31.56148 -30.08896 -28.11275 -27.26560 -26.12974 -24.60494 -23.73080 -23.12762 -22.65734 -21.34902 -20.26856 -19.09289 -18.52980 -17.92214 -17.49906 -16.99639 -16.87182 -16.68566 -16.64077 -16.29914 -16.03758 -15.60189 -15.35278 -15.09973 -15.01079 -14.60086 -14.40112 -14.18622 -13.77218 -13.60375 -13.50409 -13.27402 -13.02153 -12.85736 -12.79832 -12.62451 -12.59793 -12.44163 -12.25823 -12.18630 -12.08598 -11.93930 -11.63886 -11.35690 -11.15121 -11.08282 -10.74782 -10.68917 -9.64763 -9.43925 -9.34945 -8.62558 -6.38325 0.47116 0.90265 1.43308 1.48897 1.56925 1.73850 1.94429 2.22733 2.44989 2.73256 2.85924 3.30183 3.42317 3.55428 3.63390 3.68270 3.88445 3.95431 4.08663 4.18710 4.21164 4.31055 4.36803 4.42519 4.46200 4.50188 4.53204 4.59660 4.72212 4.80568 4.82176 4.84855 4.91773 4.93449 4.98811 5.02575 5.12710 5.16614 5.29610 5.35332 5.52309 5.76507 5.77870 5.98306 6.01725 6.04765 6.18525 6.26005 6.60721 6.89462 6.92201 7.07524 8.33030 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003533 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.427938 B = 7923.155303 C = 8638.261682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.060 3.940 3 H 0.068 0.932 4 O -0.390 6.390 5 C 0.043 3.957 6 C -0.133 4.133 7 C 0.078 3.922 8 C 0.091 3.909 9 N -0.607 5.607 10 C 0.575 3.425 11 O -0.573 6.573 12 C -0.117 4.117 13 C -0.191 4.191 14 C -0.111 4.111 15 C -0.161 4.161 16 C 0.079 3.921 17 C -0.488 4.488 18 H 0.082 0.918 19 C 0.039 3.961 20 N -0.823 5.823 21 Si 0.979 3.021 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.266 1.266 25 C -0.197 4.197 26 C 0.048 3.952 27 C 0.047 3.953 28 O -0.363 6.363 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.289 0.711 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.135 0.865 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.937 -7.533 5.193 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.002 3.998 3 H 0.085 0.915 4 O -0.310 6.310 5 C -0.033 4.033 6 C -0.171 4.171 7 C 0.037 3.963 8 C -0.031 4.031 9 N -0.340 5.340 10 C 0.367 3.633 11 O -0.454 6.454 12 C -0.120 4.120 13 C -0.211 4.211 14 C -0.129 4.129 15 C -0.181 4.181 16 C 0.076 3.924 17 C -0.517 4.517 18 H 0.100 0.900 19 C -0.177 4.177 20 N -0.449 5.449 21 Si 0.801 3.199 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.191 1.191 25 C -0.217 4.217 26 C -0.074 4.074 27 C -0.030 4.030 28 O -0.281 6.281 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.134 0.866 45 H 0.153 0.847 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.660 -7.775 5.696 15.128 hybrid contribution -0.582 0.788 -0.768 1.245 sum 11.077 -6.987 4.927 13.993 Atomic orbital electron populations 1.22297 0.93987 1.02998 1.02001 1.23151 0.94820 0.96145 0.85681 0.91451 1.88915 1.41092 1.67984 1.32973 1.23821 0.86882 0.97306 0.95294 1.23117 1.01227 0.96298 0.96413 1.22666 0.91772 0.91867 0.89955 1.22249 0.93913 0.89491 0.97448 1.48117 1.05422 1.28540 1.51890 1.18553 0.81669 0.85371 0.77671 1.90670 1.65304 1.43447 1.46005 1.19502 0.98891 0.96412 0.97228 1.20539 0.99837 0.99613 1.01150 1.20888 0.99651 0.96206 0.96202 1.21595 0.98345 1.02008 0.96154 1.17866 0.90102 0.91220 0.93181 1.19839 1.35546 0.95543 1.00746 0.89966 1.26666 0.91710 0.96416 1.02860 1.69831 1.34410 1.05083 1.35599 0.85183 0.78798 0.78818 0.77132 1.18099 1.19463 1.19120 1.21447 1.02528 1.01740 0.95981 1.23236 0.94201 0.94784 0.95200 1.23154 0.94739 0.88151 0.96985 1.87875 1.36303 1.37254 1.66687 0.91455 0.92632 0.91944 0.91249 0.86163 0.87581 0.86866 0.88263 0.89243 0.87926 0.86537 0.86997 0.90052 0.85929 0.89114 0.86580 0.84734 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 7.55 71.98 0.54 -4.38 16 2 C 0.06 1.64 3.24 30.79 0.10 1.74 16 3 H 0.07 1.91 6.66 -2.39 -0.02 1.89 16 4 O -0.39 -10.19 11.20 -148.98 -1.67 -11.86 16 5 C 0.04 0.75 7.73 72.71 0.56 1.31 16 6 C -0.13 -2.24 6.44 31.75 0.20 -2.03 16 7 C 0.08 1.85 0.97 -10.43 -0.01 1.84 16 8 C 0.09 2.44 4.59 85.97 0.39 2.84 16 9 N -0.61 -19.44 2.01 -822.48 -1.65 -21.10 16 10 C 0.58 22.87 4.84 86.80 0.42 23.29 16 11 O -0.57 -25.20 15.26 -3.86 -0.06 -25.26 16 12 C -0.12 -5.12 5.36 -20.13 -0.11 -5.23 16 13 C -0.19 -8.54 9.64 22.70 0.22 -8.32 16 14 C -0.11 -5.01 10.01 22.17 0.22 -4.79 16 15 C -0.16 -7.97 8.68 22.77 0.20 -7.77 16 16 C 0.08 3.88 5.57 -21.32 -0.12 3.76 16 17 C -0.49 -23.73 9.06 23.47 0.21 -23.52 16 18 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 19 C 0.04 1.78 5.21 85.25 0.44 2.23 16 20 N -0.82 -39.66 10.80 21.82 0.24 -39.42 16 21 Si 0.98 35.23 29.58 68.60 2.03 37.26 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 25 C -0.20 -8.73 7.09 23.01 0.16 -8.57 16 26 C 0.05 1.37 5.19 86.35 0.45 1.82 16 27 C 0.05 1.14 6.70 72.08 0.48 1.62 16 28 O -0.36 -8.75 10.17 -148.98 -1.51 -10.26 16 29 H 0.07 2.22 5.30 -2.39 -0.01 2.21 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.21 4.50 -2.39 -0.01 2.20 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.52 7.84 -2.39 -0.02 1.51 16 35 H 0.11 1.54 8.07 -2.39 -0.02 1.53 16 36 H 0.10 2.92 4.98 -2.39 -0.01 2.91 16 37 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.11 5.76 6.08 -2.91 -0.02 5.74 16 41 H 0.29 12.60 8.30 -92.71 -0.77 11.83 16 42 H 0.12 4.91 6.01 -2.91 -0.02 4.90 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.12 3.94 4.06 -2.39 -0.01 3.93 16 45 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.05 1.33 6.56 -2.39 -0.02 1.32 16 Total: -1.00 -59.24 349.42 2.76 -56.48 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 1.02 Total: 38.34 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.38 Total: -24.17 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.42 Total: -60.52 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -3.24 Total: -47.38 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -59.24 2.76 -56.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279471173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.548 kcal (2) G-P(sol) polarization free energy of solvation -59.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds