Wall clock time and date at job start Tue Mar 31 2020 17:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.44249 * 2 1 4 4 O 1.44561 * 110.39464 * 122.36673 * 2 1 3 5 5 C 1.44468 * 105.37162 * 158.78147 * 4 2 1 6 6 C 1.54616 * 104.82118 * 319.84465 * 5 4 2 7 7 C 1.53927 * 110.39157 * 237.64561 * 2 1 3 8 8 C 1.52650 * 110.20144 * 99.24496 * 7 2 1 9 9 N 1.47268 * 108.40245 * 186.71802 * 8 7 2 10 10 C 1.34772 * 121.04407 * 229.54637 * 9 8 7 11 11 O 1.21547 * 120.00462 * 356.65418 * 10 9 8 12 12 C 1.47894 * 119.99775 * 176.64987 * 10 9 8 13 13 C 1.39919 * 120.02285 * 33.23341 * 12 10 9 14 14 C 1.38329 * 120.35729 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.41263 * 359.97438 * 14 13 12 16 16 C 1.40748 * 120.04078 * 359.97438 * 15 14 13 17 17 C 1.41433 * 120.18200 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00242 * 24.80619 * 17 16 15 19 19 C 1.39937 * 120.00226 * 204.81468 * 17 16 15 20 20 N 1.30827 * 120.00085 * 17.50141 * 19 17 16 21 21 Si 1.86801 * 119.99905 * 197.50488 * 19 17 16 22 22 H 1.48495 * 109.47453 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46953 * 119.99843 * 21 19 17 24 24 H 1.48498 * 109.47171 * 239.99510 * 21 19 17 25 25 C 1.38993 * 120.02737 * 212.96186 * 12 10 9 26 26 C 1.47274 * 117.92858 * 49.56282 * 9 8 7 27 27 C 1.53292 * 108.45893 * 308.97176 * 26 9 8 28 28 O 1.42219 * 110.46987 * 336.43608 * 7 2 1 29 29 H 1.09002 * 109.47261 * 182.35570 * 1 2 3 30 30 H 1.09002 * 109.47174 * 302.36128 * 1 2 3 31 31 H 1.09003 * 109.47256 * 62.35811 * 1 2 3 32 32 H 1.08999 * 110.37156 * 201.00691 * 5 4 2 33 33 H 1.09002 * 110.46279 * 78.72809 * 5 4 2 34 34 H 1.09007 * 110.54825 * 265.30456 * 6 5 4 35 35 H 1.09003 * 110.54943 * 142.49951 * 6 5 4 36 36 H 1.08999 * 109.67330 * 306.44198 * 8 7 2 37 37 H 1.08993 * 109.67757 * 66.95611 * 8 7 2 38 38 H 1.07998 * 119.82224 * 0.02562 * 13 12 10 39 39 H 1.08002 * 119.79909 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.98179 * 179.97438 * 15 14 13 41 41 H 0.96999 * 119.99921 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.19745 * 359.97438 * 25 12 10 43 43 H 1.09000 * 109.69332 * 189.26181 * 26 9 8 44 44 H 1.09002 * 109.61966 * 68.63959 * 26 9 8 45 45 H 1.09001 * 109.51200 * 292.85074 * 27 26 9 46 46 H 1.09000 * 109.51386 * 172.75431 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0338 -0.7254 1.1445 5 6 3.3844 -1.1011 0.7955 6 6 3.3079 -1.5152 -0.6922 7 6 2.0663 -0.7721 -1.2188 8 6 2.4657 0.2008 -2.3252 9 7 2.8178 -0.5780 -3.5245 10 6 3.9665 -0.3473 -4.1905 11 8 4.7017 0.5548 -3.8399 12 6 4.3325 -1.1920 -5.3480 13 6 3.3342 -1.7086 -6.1812 14 6 3.6687 -2.4999 -7.2653 15 6 4.9879 -2.7881 -7.5377 16 6 6.0060 -2.2765 -6.7115 17 6 7.3615 -2.5700 -6.9887 18 1 7.6648 -2.8218 -7.9942 19 6 8.3097 -2.5344 -5.9601 20 7 7.9218 -2.5723 -4.7112 21 14 10.1292 -2.4326 -6.3703 22 1 10.3034 -2.4034 -7.8447 23 1 10.7015 -1.1963 -5.7792 24 1 10.8293 -3.6177 -5.8130 25 6 5.6687 -1.4687 -5.6122 26 6 1.8752 -1.6166 -3.9737 27 6 1.5354 -2.5136 -2.7779 28 8 1.0949 -1.6993 -1.6871 29 1 -0.3634 -1.0268 0.0422 30 1 -0.3633 0.5501 0.8681 31 1 -0.3634 0.4768 -0.9104 32 1 3.7144 -1.9411 1.4067 33 1 4.0596 -0.2544 0.9195 34 1 3.1756 -2.5934 -0.7829 35 1 4.2019 -1.1923 -1.2257 36 1 1.6302 0.8637 -2.5502 37 1 3.3250 0.7894 -2.0038 38 1 2.2968 -1.4884 -5.9767 39 1 2.8908 -2.8943 -7.9023 40 1 5.2411 -3.4070 -8.3858 41 1 8.5790 -2.5472 -3.9983 42 1 6.4429 -1.0681 -4.9745 43 1 2.3351 -2.2143 -4.7607 44 1 0.9659 -1.1478 -4.3498 45 1 2.4216 -3.0737 -2.4795 46 1 0.7429 -3.2079 -3.0572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279471178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:29 Heat of formation + Delta-G solvation = -78.695720 kcal Electronic energy + Delta-G solvation = -29640.360514 eV Core-core repulsion = 25688.657578 eV Total energy + Delta-G solvation = -3951.702936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98875 -39.24709 -37.56260 -37.03254 -34.63073 -33.78608 -32.66970 -31.63816 -30.32368 -29.60966 -29.04062 -27.13517 -25.63550 -24.52886 -23.57801 -22.48557 -21.65394 -21.11489 -19.80200 -18.85520 -17.73045 -16.89932 -16.57026 -16.10211 -15.96612 -15.66402 -15.33115 -15.02002 -14.87776 -14.66215 -14.51216 -14.00161 -13.72872 -13.38306 -13.07801 -12.83782 -12.77971 -12.55082 -12.48900 -12.28499 -12.07830 -11.70187 -11.54245 -11.43339 -11.26379 -11.18868 -11.14532 -10.98434 -10.75483 -10.59726 -10.34999 -10.16209 -10.01511 -9.84141 -9.69215 -9.30031 -9.05470 -8.31589 -7.69933 -7.59182 -6.91621 -4.51475 2.16182 2.70123 3.01760 3.05441 3.07638 3.16436 3.50810 3.62602 3.79119 3.84219 4.44399 4.47452 4.54035 4.68597 4.95465 4.98378 5.06722 5.17570 5.21369 5.24560 5.33712 5.43392 5.49443 5.56232 5.56845 5.67896 5.73565 5.80728 5.84236 5.88222 5.92814 6.01581 6.04766 6.17718 6.19385 6.57856 6.69841 6.70500 6.88062 6.93006 7.10150 7.14748 7.27646 7.54356 7.66056 7.75999 7.88535 8.06213 8.39921 8.69071 8.71501 8.75112 10.03464 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.003624 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.302275 B = 7725.043408 C = 8759.887190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.082 0.918 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.179 4.179 7 C 0.081 3.919 8 C 0.097 3.903 9 N -0.614 5.614 10 C 0.572 3.428 11 O -0.547 6.547 12 C -0.121 4.121 13 C -0.240 4.240 14 C -0.094 4.094 15 C -0.212 4.212 16 C 0.103 3.897 17 C -0.457 4.457 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.787 5.787 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.097 4.097 26 C 0.041 3.959 27 C 0.042 3.958 28 O -0.360 6.360 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.284 0.716 42 H 0.129 0.871 43 H 0.145 0.855 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.822 1.127 7.219 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.030 3.970 3 H 0.099 0.901 4 O -0.287 6.287 5 C -0.028 4.028 6 C -0.217 4.217 7 C 0.040 3.960 8 C -0.026 4.026 9 N -0.349 5.349 10 C 0.365 3.635 11 O -0.425 6.425 12 C -0.124 4.124 13 C -0.259 4.259 14 C -0.112 4.112 15 C -0.232 4.232 16 C 0.100 3.900 17 C -0.485 4.485 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.412 5.412 21 Si 0.734 3.266 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.117 4.117 26 C -0.081 4.081 27 C -0.035 4.035 28 O -0.278 6.278 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.610 1.543 7.928 13.334 hybrid contribution 1.189 -0.051 -0.429 1.265 sum -9.421 1.491 7.498 12.132 Atomic orbital electron populations 1.21570 0.92115 1.03672 1.01820 1.22866 0.96538 0.94466 0.83156 0.90060 1.89171 1.27659 1.74380 1.37531 1.23372 0.84567 1.00075 0.94810 1.23518 0.99103 1.02304 0.96777 1.22675 0.88928 0.90360 0.94077 1.21994 1.01747 0.93615 0.85262 1.47993 1.21189 1.37492 1.28187 1.18958 0.78775 0.83207 0.82602 1.90686 1.50857 1.32511 1.68442 1.19381 0.95427 1.01637 0.95941 1.20724 0.96732 1.08259 1.00213 1.20475 0.95727 0.98599 0.96418 1.21117 0.92386 1.06036 1.03689 1.17587 0.93119 0.88756 0.90517 1.19652 0.91806 1.41018 0.96061 0.89929 1.25961 1.02102 0.91998 0.94382 1.69783 1.37199 1.33894 1.00304 0.86221 0.81366 0.78780 0.80209 1.18246 1.19497 1.19858 1.21507 0.92929 0.97786 0.99458 1.23514 0.93772 0.91485 0.99371 1.23140 1.00982 0.93012 0.86386 1.87848 1.38480 1.50998 1.50510 0.90811 0.92278 0.91134 0.88866 0.91943 0.89612 0.89344 0.91145 0.88258 0.87208 0.88714 0.88544 0.90549 0.85366 0.83843 0.91208 0.92217 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.95 37.16 0.33 -1.08 16 2 C 0.09 1.05 3.46 -26.25 -0.09 0.96 16 3 H 0.08 0.87 7.84 -51.93 -0.41 0.47 16 4 O -0.37 -4.94 11.35 -35.23 -0.40 -5.34 16 5 C 0.05 0.59 7.65 38.01 0.29 0.88 16 6 C -0.18 -2.46 5.77 -25.37 -0.15 -2.61 16 7 C 0.08 1.07 0.90 -89.81 -0.08 0.99 16 8 C 0.10 1.42 4.95 -3.80 -0.02 1.40 16 9 N -0.61 -10.38 2.91 -173.58 -0.50 -10.89 16 10 C 0.57 12.25 7.46 -12.31 -0.09 12.15 16 11 O -0.55 -13.27 16.26 5.32 0.09 -13.18 16 12 C -0.12 -2.74 5.53 -105.03 -0.58 -3.32 16 13 C -0.24 -4.76 7.46 -38.92 -0.29 -5.05 16 14 C -0.09 -1.89 10.01 -39.73 -0.40 -2.28 16 15 C -0.21 -4.82 9.78 -38.81 -0.38 -5.20 16 16 C 0.10 2.61 5.57 -106.87 -0.59 2.02 16 17 C -0.46 -11.61 9.05 -37.73 -0.34 -11.95 16 18 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 19 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.79 -19.93 10.97 55.55 0.61 -19.32 16 21 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 25 C -0.10 -2.48 8.24 -38.44 -0.32 -2.80 16 26 C 0.04 0.58 5.07 -3.47 -0.02 0.56 16 27 C 0.04 0.53 6.70 37.31 0.25 0.78 16 28 O -0.36 -4.82 8.62 -35.23 -0.30 -5.12 16 29 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.19 6.64 -51.92 -0.34 0.85 16 35 H 0.09 1.39 7.67 -51.93 -0.40 0.99 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.56 7.04 -51.93 -0.37 1.20 16 38 H 0.11 1.84 5.28 -52.49 -0.28 1.56 16 39 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 42 H 0.13 3.57 6.09 -52.48 -0.32 3.25 16 43 H 0.14 2.21 3.70 -52.04 -0.19 2.02 16 44 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 45 H 0.06 0.82 6.51 -51.93 -0.34 0.48 16 46 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -28.92 360.25 -9.06 -37.98 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.39 Total: 10.04 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.56 Total: -12.81 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.10 Total: -30.20 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.62 Total: -23.64 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.92 -9.06 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279471178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.718 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds