Wall clock time and date at job start Tue Mar 31 2020 17:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.44249 * 2 1 4 4 O 1.44561 * 110.39464 * 122.36673 * 2 1 3 5 5 C 1.44468 * 105.37162 * 158.78147 * 4 2 1 6 6 C 1.54616 * 104.82118 * 319.84465 * 5 4 2 7 7 C 1.53927 * 110.39157 * 237.64561 * 2 1 3 8 8 C 1.52650 * 110.20144 * 99.24496 * 7 2 1 9 9 N 1.47268 * 108.40245 * 186.71802 * 8 7 2 10 10 C 1.34772 * 121.04407 * 229.54637 * 9 8 7 11 11 O 1.21547 * 120.00462 * 356.65418 * 10 9 8 12 12 C 1.47894 * 119.99775 * 176.64987 * 10 9 8 13 13 C 1.39919 * 120.02285 * 33.23341 * 12 10 9 14 14 C 1.38329 * 120.35729 * 180.02562 * 13 12 10 15 15 C 1.37750 * 120.41263 * 359.97438 * 14 13 12 16 16 C 1.40748 * 120.04078 * 359.97438 * 15 14 13 17 17 C 1.41433 * 120.18200 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00242 * 24.80619 * 17 16 15 19 19 C 1.39937 * 120.00226 * 204.81468 * 17 16 15 20 20 N 1.30827 * 120.00085 * 17.50141 * 19 17 16 21 21 Si 1.86801 * 119.99905 * 197.50488 * 19 17 16 22 22 H 1.48495 * 109.47453 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46953 * 119.99843 * 21 19 17 24 24 H 1.48498 * 109.47171 * 239.99510 * 21 19 17 25 25 C 1.38993 * 120.02737 * 212.96186 * 12 10 9 26 26 C 1.47274 * 117.92858 * 49.56282 * 9 8 7 27 27 C 1.53292 * 108.45893 * 308.97176 * 26 9 8 28 28 O 1.42219 * 110.46987 * 336.43608 * 7 2 1 29 29 H 1.09002 * 109.47261 * 182.35570 * 1 2 3 30 30 H 1.09002 * 109.47174 * 302.36128 * 1 2 3 31 31 H 1.09003 * 109.47256 * 62.35811 * 1 2 3 32 32 H 1.08999 * 110.37156 * 201.00691 * 5 4 2 33 33 H 1.09002 * 110.46279 * 78.72809 * 5 4 2 34 34 H 1.09007 * 110.54825 * 265.30456 * 6 5 4 35 35 H 1.09003 * 110.54943 * 142.49951 * 6 5 4 36 36 H 1.08999 * 109.67330 * 306.44198 * 8 7 2 37 37 H 1.08993 * 109.67757 * 66.95611 * 8 7 2 38 38 H 1.07998 * 119.82224 * 0.02562 * 13 12 10 39 39 H 1.08002 * 119.79909 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.98179 * 179.97438 * 15 14 13 41 41 H 0.96999 * 119.99921 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.19745 * 359.97438 * 25 12 10 43 43 H 1.09000 * 109.69332 * 189.26181 * 26 9 8 44 44 H 1.09002 * 109.61966 * 68.63959 * 26 9 8 45 45 H 1.09001 * 109.51200 * 292.85074 * 27 26 9 46 46 H 1.09000 * 109.51386 * 172.75431 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0338 -0.7254 1.1445 5 6 3.3844 -1.1011 0.7955 6 6 3.3079 -1.5152 -0.6922 7 6 2.0663 -0.7721 -1.2188 8 6 2.4657 0.2008 -2.3252 9 7 2.8178 -0.5780 -3.5245 10 6 3.9665 -0.3473 -4.1905 11 8 4.7017 0.5548 -3.8399 12 6 4.3325 -1.1920 -5.3480 13 6 3.3342 -1.7086 -6.1812 14 6 3.6687 -2.4999 -7.2653 15 6 4.9879 -2.7881 -7.5377 16 6 6.0060 -2.2765 -6.7115 17 6 7.3615 -2.5700 -6.9887 18 1 7.6648 -2.8218 -7.9942 19 6 8.3097 -2.5344 -5.9601 20 7 7.9218 -2.5723 -4.7112 21 14 10.1292 -2.4326 -6.3703 22 1 10.3034 -2.4034 -7.8447 23 1 10.7015 -1.1963 -5.7792 24 1 10.8293 -3.6177 -5.8130 25 6 5.6687 -1.4687 -5.6122 26 6 1.8752 -1.6166 -3.9737 27 6 1.5354 -2.5136 -2.7779 28 8 1.0949 -1.6993 -1.6871 29 1 -0.3634 -1.0268 0.0422 30 1 -0.3633 0.5501 0.8681 31 1 -0.3634 0.4768 -0.9104 32 1 3.7144 -1.9411 1.4067 33 1 4.0596 -0.2544 0.9195 34 1 3.1756 -2.5934 -0.7829 35 1 4.2019 -1.1923 -1.2257 36 1 1.6302 0.8637 -2.5502 37 1 3.3250 0.7894 -2.0038 38 1 2.2968 -1.4884 -5.9767 39 1 2.8908 -2.8943 -7.9023 40 1 5.2411 -3.4070 -8.3858 41 1 8.5790 -2.5472 -3.9983 42 1 6.4429 -1.0681 -4.9745 43 1 2.3351 -2.2143 -4.7607 44 1 0.9659 -1.1478 -4.3498 45 1 2.4216 -3.0737 -2.4795 46 1 0.7429 -3.2079 -3.0572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279471178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:28 Heat of formation + Delta-G solvation = -96.109159 kcal Electronic energy + Delta-G solvation = -29641.115617 eV Core-core repulsion = 25688.657578 eV Total energy + Delta-G solvation = -3952.458039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.18711 -40.69817 -38.93393 -38.56594 -36.10785 -35.46643 -33.79845 -32.63512 -31.97838 -31.36023 -30.19357 -28.40717 -27.35544 -25.68488 -24.83096 -23.80107 -22.91513 -22.80578 -21.09800 -20.27031 -19.39652 -18.06761 -17.87217 -17.46531 -17.43612 -16.94342 -16.72645 -16.45642 -16.22612 -15.98997 -15.69225 -15.31824 -15.06221 -14.98750 -14.57910 -14.37670 -14.16561 -13.86802 -13.67437 -13.43691 -13.18034 -13.17164 -13.00406 -12.84536 -12.72221 -12.45932 -12.32122 -12.19504 -12.14350 -12.01057 -11.94235 -11.71399 -11.38436 -11.17048 -11.08969 -10.84565 -10.66907 -9.72116 -9.40139 -9.37436 -8.71270 -6.40858 0.40882 0.96206 1.34782 1.43657 1.50178 1.73866 1.98406 2.16276 2.47464 2.69618 2.79938 3.37339 3.44669 3.61554 3.65214 3.69860 3.88261 3.96018 4.06278 4.18357 4.26627 4.31358 4.36437 4.44836 4.47967 4.50370 4.54720 4.58378 4.72508 4.76743 4.77566 4.88142 4.89236 4.94842 5.03143 5.05525 5.17052 5.26116 5.36092 5.38745 5.49388 5.73209 5.79977 5.91230 6.00944 6.07408 6.21191 6.29251 6.57393 6.85257 6.90926 7.10046 8.25953 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.003624 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.302275 B = 7725.043408 C = 8759.887190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.095 0.905 4 O -0.380 6.380 5 C 0.051 3.949 6 C -0.180 4.180 7 C 0.085 3.915 8 C 0.095 3.905 9 N -0.604 5.604 10 C 0.566 3.434 11 O -0.589 6.589 12 C -0.131 4.131 13 C -0.215 4.215 14 C -0.090 4.090 15 C -0.217 4.217 16 C 0.072 3.928 17 C -0.495 4.495 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.826 5.826 21 Si 0.979 3.021 22 H -0.252 1.252 23 H -0.272 1.272 24 H -0.263 1.263 25 C -0.133 4.133 26 C 0.036 3.964 27 C 0.044 3.956 28 O -0.357 6.357 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.043 0.957 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 0.808 6.968 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.028 3.972 3 H 0.112 0.888 4 O -0.299 6.299 5 C -0.026 4.026 6 C -0.218 4.218 7 C 0.044 3.956 8 C -0.027 4.027 9 N -0.337 5.337 10 C 0.358 3.642 11 O -0.471 6.471 12 C -0.134 4.134 13 C -0.234 4.234 14 C -0.108 4.108 15 C -0.237 4.237 16 C 0.070 3.930 17 C -0.525 4.525 18 H 0.101 0.899 19 C -0.182 4.182 20 N -0.452 5.452 21 Si 0.800 3.200 22 H -0.175 1.175 23 H -0.197 1.197 24 H -0.187 1.187 25 C -0.153 4.153 26 C -0.084 4.084 27 C -0.033 4.033 28 O -0.275 6.275 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.150 0.850 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.708 1.196 7.680 15.758 hybrid contribution 1.894 0.038 -0.342 1.925 sum -11.814 1.233 7.339 13.962 Atomic orbital electron populations 1.21569 0.90599 1.03381 1.03121 1.23044 0.97720 0.94614 0.81865 0.88780 1.89162 1.27970 1.74662 1.38113 1.23415 0.84520 1.00923 0.93710 1.23467 0.98369 1.02065 0.97916 1.22646 0.88742 0.90130 0.94093 1.22168 1.01864 0.93996 0.84691 1.48001 1.20011 1.37676 1.28004 1.18876 0.79806 0.82755 0.82797 1.90653 1.52543 1.34343 1.69572 1.19653 0.95079 1.01697 0.96984 1.21238 0.98012 1.05664 0.98443 1.20960 0.95679 0.97593 0.96549 1.21421 0.93226 1.05688 1.03390 1.17910 0.94203 0.89534 0.91400 1.19898 0.92845 1.43258 0.96461 0.89856 1.26791 1.06324 0.91163 0.93964 1.69870 1.38546 1.35515 1.01249 0.85192 0.75885 0.78774 0.80138 1.17522 1.19677 1.18744 1.21279 0.93673 0.99982 1.00392 1.23695 0.93825 0.91021 0.99906 1.23235 1.01701 0.92864 0.85503 1.87870 1.38171 1.50868 1.50601 0.91832 0.90990 0.89855 0.87525 0.91225 0.90056 0.92232 0.88629 0.89997 0.83017 0.84015 0.87338 0.90360 0.89021 0.84962 0.87984 0.93906 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.95 71.98 0.64 -1.68 16 2 C 0.09 1.87 3.46 30.91 0.11 1.97 16 3 H 0.09 1.82 7.84 -2.39 -0.02 1.80 16 4 O -0.38 -9.57 11.35 -148.98 -1.69 -11.26 16 5 C 0.05 1.20 7.65 72.53 0.55 1.76 16 6 C -0.18 -4.98 5.77 31.48 0.18 -4.80 16 7 C 0.09 2.13 0.90 -10.27 -0.01 2.12 16 8 C 0.10 2.67 4.95 86.12 0.43 3.10 16 9 N -0.60 -19.75 2.91 -821.35 -2.39 -22.14 16 10 C 0.57 24.69 7.46 86.80 0.65 25.34 16 11 O -0.59 -30.06 16.26 -3.86 -0.06 -30.13 16 12 C -0.13 -6.03 5.53 -20.13 -0.11 -6.14 16 13 C -0.21 -8.00 7.46 22.70 0.17 -7.83 16 14 C -0.09 -3.35 10.01 22.18 0.22 -3.12 16 15 C -0.22 -9.76 9.78 22.77 0.22 -9.54 16 16 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 17 C -0.50 -26.45 9.05 23.47 0.21 -26.24 16 18 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 19 C 0.03 1.66 5.14 85.25 0.44 2.10 16 20 N -0.83 -44.67 10.97 21.82 0.24 -44.43 16 21 Si 0.98 39.00 29.59 68.60 2.03 41.03 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 C -0.13 -7.19 8.24 23.01 0.19 -7.00 16 26 C 0.04 0.91 5.07 86.33 0.44 1.35 16 27 C 0.04 0.98 6.70 72.08 0.48 1.46 16 28 O -0.36 -8.53 8.62 -148.98 -1.28 -9.81 16 29 H 0.06 1.28 7.49 -2.39 -0.02 1.27 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 2.28 6.64 -2.38 -0.02 2.27 16 35 H 0.06 1.99 7.67 -2.39 -0.02 1.97 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 2.62 7.04 -2.39 -0.02 2.60 16 38 H 0.15 4.37 5.28 -2.91 -0.02 4.35 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 42 H 0.09 5.57 6.09 -2.91 -0.02 5.55 16 43 H 0.13 3.62 3.70 -2.49 -0.01 3.61 16 44 H 0.10 2.01 8.12 -2.39 -0.02 1.99 16 45 H 0.04 1.12 6.51 -2.39 -0.02 1.11 16 46 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.87 360.25 2.54 -65.33 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 1.00 Total: 34.87 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.70 Total: -23.47 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -2.15 Total: -66.57 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -3.04 Total: -51.19 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -67.87 2.54 -65.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279471178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.780 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds