Wall clock time and date at job start Tue Mar 31 2020 17:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.94894 * 2 1 4 4 O 1.43419 * 109.86204 * 238.97841 * 2 1 3 5 5 C 1.43712 * 109.93485 * 238.36107 * 4 2 1 6 6 C 1.55071 * 105.20603 * 24.29624 * 5 4 2 7 7 C 1.53657 * 109.86509 * 121.02358 * 2 1 3 8 8 C 1.52447 * 110.68628 * 341.08569 * 7 2 1 9 9 N 1.47314 * 108.41114 * 185.84484 * 8 7 2 10 10 C 1.34782 * 121.07083 * 229.24668 * 9 8 7 11 11 O 1.21546 * 120.00324 * 183.63747 * 10 9 8 12 12 C 1.47891 * 119.99557 * 3.63354 * 10 9 8 13 13 C 1.39917 * 120.02529 * 316.57325 * 12 10 9 14 14 C 1.38335 * 120.35768 * 180.02562 * 13 12 10 15 15 C 1.37752 * 120.41168 * 0.27279 * 14 13 12 16 16 C 1.40751 * 120.03715 * 359.49936 * 15 14 13 17 17 C 1.41434 * 120.17676 * 180.26923 * 16 15 14 18 18 H 1.08005 * 119.99942 * 330.87799 * 17 16 15 19 19 C 1.39941 * 120.00025 * 150.87377 * 17 16 15 20 20 N 1.30832 * 119.99853 * 165.03701 * 19 17 16 21 21 Si 1.86795 * 119.99787 * 345.03501 * 19 17 16 22 22 H 1.48494 * 109.47150 * 94.71629 * 21 19 17 23 23 H 1.48498 * 109.47172 * 214.71561 * 21 19 17 24 24 H 1.48504 * 109.47278 * 334.71257 * 21 19 17 25 25 C 1.38993 * 120.02699 * 136.59788 * 12 10 9 26 26 C 1.47160 * 117.86470 * 49.52081 * 9 8 7 27 27 C 1.53704 * 108.32275 * 308.50610 * 26 9 8 28 28 O 1.41972 * 111.01141 * 216.98265 * 7 2 1 29 29 H 1.08998 * 109.47370 * 298.97205 * 1 2 3 30 30 H 1.08998 * 109.47216 * 58.97652 * 1 2 3 31 31 H 1.09006 * 109.46624 * 178.97402 * 1 2 3 32 32 H 1.08997 * 110.30031 * 143.23320 * 5 4 2 33 33 H 1.09005 * 110.29689 * 265.36656 * 5 4 2 34 34 H 1.08989 * 111.14138 * 206.32535 * 6 5 4 35 35 H 1.09009 * 111.13215 * 82.13037 * 6 5 4 36 36 H 1.08999 * 109.67734 * 66.10946 * 8 7 2 37 37 H 1.09005 * 109.70247 * 305.59132 * 8 7 2 38 38 H 1.08007 * 119.82486 * 0.02562 * 13 12 10 39 39 H 1.08002 * 119.78999 * 180.02562 * 14 13 12 40 40 H 1.07995 * 119.97859 * 179.74719 * 15 14 13 41 41 H 0.97001 * 119.99320 * 179.97438 * 20 19 17 42 42 H 1.08008 * 120.20127 * 359.97438 * 25 12 10 43 43 H 1.09003 * 109.62222 * 68.26964 * 26 9 8 44 44 H 1.08999 * 109.62968 * 188.83449 * 26 9 8 45 45 H 1.09000 * 109.65610 * 293.23579 * 27 26 9 46 46 H 1.09004 * 109.48985 * 173.06161 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9019 1.0247 0.0000 4 8 2.0173 -0.6952 -1.1559 5 6 2.8503 -1.7943 -0.7518 6 6 2.3869 -2.1490 0.6849 7 6 2.0522 -0.7448 1.2384 8 6 0.9663 -0.8460 2.3036 9 7 1.5573 -1.4390 3.5157 10 6 0.9610 -2.4693 4.1478 11 8 1.4298 -2.9007 5.1829 12 6 -0.2638 -3.0748 3.5819 13 6 -1.2808 -2.2566 3.0778 14 6 -2.4296 -2.8157 2.5474 15 6 -2.5883 -4.1836 2.5143 16 6 -1.5740 -5.0228 3.0123 17 6 -1.7314 -6.4279 2.9746 18 1 -2.7190 -6.8622 3.0251 19 6 -0.6076 -7.2554 2.8719 20 7 -0.7111 -8.5341 3.1284 21 14 1.0404 -6.5341 2.3687 22 1 1.8275 -6.2030 3.5835 23 1 1.7854 -7.5248 1.5510 24 1 0.8184 -5.3011 1.5713 25 6 -0.4059 -4.4571 3.5508 26 6 2.8165 -0.8663 4.0178 27 6 3.8195 -0.8102 2.8545 28 8 3.2208 -0.1229 1.7513 29 1 -0.3634 0.4978 0.8990 30 1 -0.3633 0.5296 -0.8806 31 1 -0.3633 -1.0276 -0.0184 32 1 2.7034 -2.6448 -1.4173 33 1 3.8979 -1.4931 -0.7475 34 1 3.1916 -2.6142 1.2540 35 1 1.5021 -2.7855 0.6665 36 1 0.1560 -1.4794 1.9427 37 1 0.5813 0.1481 2.5315 38 1 -1.1683 -1.1827 3.1029 39 1 -3.2086 -2.1755 2.1604 40 1 -3.4898 -4.6125 2.1024 41 1 0.0678 -9.1077 3.0568 42 1 0.3765 -5.0926 3.9388 43 1 2.6355 0.1393 4.3975 44 1 3.2128 -1.4956 4.8146 45 1 4.0863 -1.8227 2.5513 46 1 4.7157 -0.2774 3.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279471181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:33 Heat of formation + Delta-G solvation = -85.157255 kcal Electronic energy + Delta-G solvation = -30543.970989 eV Core-core repulsion = 26591.987860 eV Total energy + Delta-G solvation = -3951.983129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23507 -39.40071 -37.84978 -37.18826 -34.87239 -33.75931 -33.04593 -31.35251 -30.93685 -30.32200 -29.19295 -26.70198 -25.71029 -25.01158 -24.04322 -22.46065 -21.50226 -21.33716 -19.95391 -19.00781 -17.96118 -17.38278 -16.66114 -16.39294 -15.92549 -15.74627 -15.60673 -15.31625 -14.91292 -14.70422 -14.47615 -14.16951 -13.89212 -13.76395 -13.18697 -13.16188 -12.90530 -12.87712 -12.63651 -12.46283 -12.18349 -11.88471 -11.77140 -11.65578 -11.53046 -11.41606 -11.11276 -10.97797 -10.87456 -10.63997 -10.44314 -10.23127 -10.12692 -9.87713 -9.68206 -9.44403 -9.21451 -8.51557 -7.95207 -7.82749 -7.08402 -4.65217 1.91059 2.43580 2.95189 3.00282 3.05682 3.14664 3.30311 3.33745 3.66840 3.84088 4.23169 4.31133 4.47594 4.66520 4.70638 4.84625 4.98267 5.00476 5.10241 5.15369 5.23206 5.31447 5.32288 5.35009 5.49829 5.55556 5.60505 5.65358 5.68370 5.79804 5.83996 5.90346 5.92609 5.93482 6.12469 6.32017 6.42801 6.50007 6.63210 6.80104 6.90315 7.00818 7.08311 7.26112 7.40702 7.46193 7.65936 7.86832 8.16706 8.40478 8.46191 8.62144 9.93613 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.005006 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.964868 B = 5592.369980 C = 5685.122144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 H 0.090 0.910 4 O -0.374 6.374 5 C 0.058 3.942 6 C -0.184 4.184 7 C 0.075 3.925 8 C 0.078 3.922 9 N -0.616 5.616 10 C 0.567 3.433 11 O -0.540 6.540 12 C -0.093 4.093 13 C -0.227 4.227 14 C -0.085 4.085 15 C -0.192 4.192 16 C 0.087 3.913 17 C -0.439 4.439 18 H 0.095 0.905 19 C 0.084 3.916 20 N -0.801 5.801 21 Si 0.904 3.096 22 H -0.266 1.266 23 H -0.288 1.288 24 H -0.244 1.244 25 C -0.181 4.181 26 C 0.076 3.924 27 C 0.045 3.955 28 O -0.363 6.363 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.288 0.712 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 14.772 -5.744 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.108 0.892 4 O -0.294 6.294 5 C -0.019 4.019 6 C -0.222 4.222 7 C 0.034 3.966 8 C -0.045 4.045 9 N -0.351 5.351 10 C 0.359 3.641 11 O -0.417 6.417 12 C -0.096 4.096 13 C -0.247 4.247 14 C -0.103 4.103 15 C -0.211 4.211 16 C 0.084 3.916 17 C -0.467 4.467 18 H 0.113 0.887 19 C -0.136 4.136 20 N -0.425 5.425 21 Si 0.730 3.270 22 H -0.192 1.192 23 H -0.215 1.215 24 H -0.167 1.167 25 C -0.201 4.201 26 C -0.047 4.047 27 C -0.032 4.032 28 O -0.282 6.282 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.143 14.440 -5.428 17.000 hybrid contribution 0.845 -0.194 0.327 0.926 sum 7.988 14.246 -5.101 17.111 Atomic orbital electron populations 1.22241 0.93359 1.03894 1.02950 1.22443 0.94644 0.96361 0.82440 0.89234 1.88471 1.67081 1.44399 1.29418 1.23336 0.94463 0.89370 0.94683 1.23824 1.03926 0.97474 0.96937 1.22770 0.86829 0.92803 0.94185 1.22936 0.96770 1.00407 0.84340 1.48099 1.24457 1.34359 1.28205 1.18989 0.84018 0.77790 0.83339 1.90718 1.65746 1.61903 1.23326 1.19272 0.93568 0.94413 1.02307 1.20479 0.96497 0.97124 1.10593 1.20574 0.96003 0.94949 0.98770 1.21161 1.00941 0.92721 1.06304 1.17681 0.90738 0.93896 0.89313 1.19545 0.95958 0.89087 1.42129 0.88656 1.26152 1.01110 0.94642 0.91685 1.69655 1.33286 1.05769 1.33742 0.86434 0.80778 0.79811 0.79944 1.19243 1.21526 1.16705 1.21059 1.00640 0.92168 1.06218 1.22307 0.84938 0.99848 0.97557 1.23167 0.95663 0.98186 0.86166 1.87786 1.41054 1.50514 1.48803 0.90739 0.91134 0.90986 0.89467 0.91983 0.89488 0.88624 0.85076 0.90561 0.87961 0.87984 0.87643 0.90175 0.87513 0.90764 0.88064 0.92246 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 8.38 37.16 0.31 -1.44 16 2 C 0.10 1.18 3.89 -26.39 -0.10 1.08 16 3 H 0.09 1.00 8.06 -51.92 -0.42 0.58 16 4 O -0.37 -5.02 11.03 -35.23 -0.39 -5.41 16 5 C 0.06 0.71 7.78 38.25 0.30 1.00 16 6 C -0.18 -2.50 6.01 -24.80 -0.15 -2.65 16 7 C 0.07 0.96 0.79 -89.72 -0.07 0.89 16 8 C 0.08 1.06 2.56 -3.88 -0.01 1.05 16 9 N -0.62 -9.80 2.92 -173.49 -0.51 -10.31 16 10 C 0.57 11.51 7.33 -12.31 -0.09 11.41 16 11 O -0.54 -12.55 16.45 5.32 0.09 -12.46 16 12 C -0.09 -1.97 5.22 -105.04 -0.55 -2.52 16 13 C -0.23 -4.19 7.35 -38.92 -0.29 -4.48 16 14 C -0.08 -1.56 10.01 -39.72 -0.40 -1.96 16 15 C -0.19 -4.07 9.78 -38.81 -0.38 -4.45 16 16 C 0.09 2.10 5.15 -106.87 -0.55 1.55 16 17 C -0.44 -11.43 9.60 -37.73 -0.36 -11.80 16 18 H 0.10 2.57 8.06 -52.48 -0.42 2.15 16 19 C 0.08 2.16 5.45 -17.34 -0.09 2.06 16 20 N -0.80 -20.95 13.93 55.55 0.77 -20.18 16 21 Si 0.90 20.55 24.41 -169.99 -4.15 16.40 16 22 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 23 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.24 -5.44 6.67 56.52 0.38 -5.06 16 25 C -0.18 -4.34 6.64 -38.45 -0.26 -4.59 16 26 C 0.08 1.00 6.64 -3.32 -0.02 0.97 16 27 C 0.05 0.51 6.79 37.52 0.25 0.76 16 28 O -0.36 -4.56 10.23 -35.23 -0.36 -4.92 16 29 H 0.07 0.67 6.47 -51.93 -0.34 0.34 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.18 6.02 -51.94 -0.31 0.87 16 35 H 0.10 1.46 7.84 -51.92 -0.41 1.06 16 36 H 0.13 1.93 3.13 -51.93 -0.16 1.77 16 37 H 0.08 0.90 7.13 -51.93 -0.37 0.53 16 38 H 0.10 1.60 6.39 -52.48 -0.34 1.26 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.29 6.83 8.30 -40.82 -0.34 6.50 16 42 H 0.11 2.72 4.41 -52.48 -0.23 2.49 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.41 7.10 -51.93 -0.37 1.04 16 45 H 0.06 0.70 6.17 -51.93 -0.32 0.38 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -29.33 352.25 -7.91 -37.24 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.22 Total: 7.41 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.45 Total: -13.09 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.27 Total: -30.48 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.66 Total: -22.79 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.15 Total: 16.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.33 -7.91 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279471181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.919 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds