Wall clock time and date at job start Tue Mar 31 2020 17:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.94894 * 2 1 4 4 O 1.43419 * 109.86204 * 238.97841 * 2 1 3 5 5 C 1.43712 * 109.93485 * 238.36107 * 4 2 1 6 6 C 1.55071 * 105.20603 * 24.29624 * 5 4 2 7 7 C 1.53657 * 109.86509 * 121.02358 * 2 1 3 8 8 C 1.52447 * 110.68628 * 341.08569 * 7 2 1 9 9 N 1.47314 * 108.41114 * 185.84484 * 8 7 2 10 10 C 1.34782 * 121.07083 * 229.24668 * 9 8 7 11 11 O 1.21546 * 120.00324 * 183.63747 * 10 9 8 12 12 C 1.47891 * 119.99557 * 3.63354 * 10 9 8 13 13 C 1.39917 * 120.02529 * 316.57325 * 12 10 9 14 14 C 1.38335 * 120.35768 * 180.02562 * 13 12 10 15 15 C 1.37752 * 120.41168 * 0.27279 * 14 13 12 16 16 C 1.40751 * 120.03715 * 359.49936 * 15 14 13 17 17 C 1.41434 * 120.17676 * 180.26923 * 16 15 14 18 18 H 1.08005 * 119.99942 * 330.87799 * 17 16 15 19 19 C 1.39941 * 120.00025 * 150.87377 * 17 16 15 20 20 N 1.30832 * 119.99853 * 165.03701 * 19 17 16 21 21 Si 1.86795 * 119.99787 * 345.03501 * 19 17 16 22 22 H 1.48494 * 109.47150 * 94.71629 * 21 19 17 23 23 H 1.48498 * 109.47172 * 214.71561 * 21 19 17 24 24 H 1.48504 * 109.47278 * 334.71257 * 21 19 17 25 25 C 1.38993 * 120.02699 * 136.59788 * 12 10 9 26 26 C 1.47160 * 117.86470 * 49.52081 * 9 8 7 27 27 C 1.53704 * 108.32275 * 308.50610 * 26 9 8 28 28 O 1.41972 * 111.01141 * 216.98265 * 7 2 1 29 29 H 1.08998 * 109.47370 * 298.97205 * 1 2 3 30 30 H 1.08998 * 109.47216 * 58.97652 * 1 2 3 31 31 H 1.09006 * 109.46624 * 178.97402 * 1 2 3 32 32 H 1.08997 * 110.30031 * 143.23320 * 5 4 2 33 33 H 1.09005 * 110.29689 * 265.36656 * 5 4 2 34 34 H 1.08989 * 111.14138 * 206.32535 * 6 5 4 35 35 H 1.09009 * 111.13215 * 82.13037 * 6 5 4 36 36 H 1.08999 * 109.67734 * 66.10946 * 8 7 2 37 37 H 1.09005 * 109.70247 * 305.59132 * 8 7 2 38 38 H 1.08007 * 119.82486 * 0.02562 * 13 12 10 39 39 H 1.08002 * 119.78999 * 180.02562 * 14 13 12 40 40 H 1.07995 * 119.97859 * 179.74719 * 15 14 13 41 41 H 0.97001 * 119.99320 * 179.97438 * 20 19 17 42 42 H 1.08008 * 120.20127 * 359.97438 * 25 12 10 43 43 H 1.09003 * 109.62222 * 68.26964 * 26 9 8 44 44 H 1.08999 * 109.62968 * 188.83449 * 26 9 8 45 45 H 1.09000 * 109.65610 * 293.23579 * 27 26 9 46 46 H 1.09004 * 109.48985 * 173.06161 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9019 1.0247 0.0000 4 8 2.0173 -0.6952 -1.1559 5 6 2.8503 -1.7943 -0.7518 6 6 2.3869 -2.1490 0.6849 7 6 2.0522 -0.7448 1.2384 8 6 0.9663 -0.8460 2.3036 9 7 1.5573 -1.4390 3.5157 10 6 0.9610 -2.4693 4.1478 11 8 1.4298 -2.9007 5.1829 12 6 -0.2638 -3.0748 3.5819 13 6 -1.2808 -2.2566 3.0778 14 6 -2.4296 -2.8157 2.5474 15 6 -2.5883 -4.1836 2.5143 16 6 -1.5740 -5.0228 3.0123 17 6 -1.7314 -6.4279 2.9746 18 1 -2.7190 -6.8622 3.0251 19 6 -0.6076 -7.2554 2.8719 20 7 -0.7111 -8.5341 3.1284 21 14 1.0404 -6.5341 2.3687 22 1 1.8275 -6.2030 3.5835 23 1 1.7854 -7.5248 1.5510 24 1 0.8184 -5.3011 1.5713 25 6 -0.4059 -4.4571 3.5508 26 6 2.8165 -0.8663 4.0178 27 6 3.8195 -0.8102 2.8545 28 8 3.2208 -0.1229 1.7513 29 1 -0.3634 0.4978 0.8990 30 1 -0.3633 0.5296 -0.8806 31 1 -0.3633 -1.0276 -0.0184 32 1 2.7034 -2.6448 -1.4173 33 1 3.8979 -1.4931 -0.7475 34 1 3.1916 -2.6142 1.2540 35 1 1.5021 -2.7855 0.6665 36 1 0.1560 -1.4794 1.9427 37 1 0.5813 0.1481 2.5315 38 1 -1.1683 -1.1827 3.1029 39 1 -3.2086 -2.1755 2.1604 40 1 -3.4898 -4.6125 2.1024 41 1 0.0678 -9.1077 3.0568 42 1 0.3765 -5.0926 3.9388 43 1 2.6355 0.1393 4.3975 44 1 3.2128 -1.4956 4.8146 45 1 4.0863 -1.8227 2.5513 46 1 4.7157 -0.2774 3.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279471181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:32 Heat of formation + Delta-G solvation = -104.737037 kcal Electronic energy + Delta-G solvation = -30544.820033 eV Core-core repulsion = 26591.987860 eV Total energy + Delta-G solvation = -3952.832172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.34706 -40.79339 -39.25072 -38.52744 -36.19671 -35.52766 -34.06883 -32.63500 -32.28174 -31.94399 -30.33939 -27.84054 -27.30631 -26.20800 -25.25573 -23.76222 -23.10167 -22.49343 -21.21467 -20.23652 -19.61553 -18.56940 -18.00123 -17.85355 -17.24366 -17.10231 -16.67850 -16.51692 -16.27900 -16.18858 -15.75257 -15.42147 -15.14681 -15.02134 -14.78289 -14.57742 -14.22639 -14.14918 -13.95503 -13.64806 -13.56850 -13.35688 -13.05136 -12.82309 -12.68415 -12.53075 -12.48326 -12.33133 -12.25852 -12.07752 -11.96550 -11.75053 -11.55810 -11.22231 -11.17815 -10.85893 -10.60654 -9.80998 -9.57410 -9.55648 -8.98471 -6.59074 0.23475 0.70949 1.15903 1.19576 1.31037 1.58075 1.81386 1.98324 2.36768 2.51349 2.73383 3.20619 3.36385 3.44547 3.49250 3.70650 3.83596 3.93381 4.07786 4.11893 4.18331 4.20729 4.29602 4.35173 4.39739 4.43916 4.52617 4.60154 4.61777 4.64705 4.69028 4.78662 4.82165 4.86860 4.89537 4.90211 5.07535 5.15190 5.25338 5.34236 5.37740 5.58005 5.73172 5.78638 5.86556 6.05081 6.09264 6.13440 6.28646 6.58711 6.73827 6.94764 8.09808 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.005006 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.964868 B = 5592.369980 C = 5685.122144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.102 0.898 4 O -0.389 6.389 5 C 0.060 3.940 6 C -0.190 4.190 7 C 0.080 3.920 8 C 0.073 3.927 9 N -0.607 5.607 10 C 0.562 3.438 11 O -0.582 6.582 12 C -0.107 4.107 13 C -0.189 4.189 14 C -0.076 4.076 15 C -0.190 4.190 16 C 0.068 3.932 17 C -0.477 4.477 18 H 0.068 0.932 19 C 0.051 3.949 20 N -0.846 5.846 21 Si 0.951 3.049 22 H -0.285 1.285 23 H -0.273 1.273 24 H -0.241 1.241 25 C -0.204 4.204 26 C 0.071 3.929 27 C 0.048 3.952 28 O -0.362 6.362 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.293 0.707 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 19.604 -7.020 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.120 0.880 4 O -0.309 6.309 5 C -0.016 4.016 6 C -0.228 4.228 7 C 0.039 3.961 8 C -0.048 4.048 9 N -0.339 5.339 10 C 0.353 3.647 11 O -0.463 6.463 12 C -0.110 4.110 13 C -0.208 4.208 14 C -0.094 4.094 15 C -0.210 4.210 16 C 0.066 3.934 17 C -0.507 4.507 18 H 0.087 0.913 19 C -0.164 4.164 20 N -0.473 5.473 21 Si 0.777 3.223 22 H -0.212 1.212 23 H -0.199 1.199 24 H -0.164 1.164 25 C -0.224 4.224 26 C -0.051 4.051 27 C -0.028 4.028 28 O -0.280 6.280 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.376 19.315 -6.748 21.749 hybrid contribution 0.724 -1.340 0.720 1.685 sum 8.100 17.975 -6.028 20.617 Atomic orbital electron populations 1.22274 0.92184 1.03387 1.04543 1.22597 0.95592 0.96464 0.81289 0.88012 1.88455 1.67406 1.44673 1.30356 1.23365 0.94865 0.89503 0.93851 1.23809 1.02880 0.97920 0.98155 1.22729 0.86779 0.92350 0.94286 1.23136 0.96843 1.01357 0.83497 1.48131 1.24890 1.32801 1.28106 1.18871 0.83980 0.78715 0.83164 1.90698 1.66780 1.63491 1.25316 1.19544 0.95227 0.93716 1.02513 1.21053 0.94681 0.98979 1.06121 1.21086 0.96943 0.94121 0.97226 1.21474 1.00280 0.94075 1.05149 1.17802 0.91989 0.93495 0.90115 1.19525 0.95011 0.90506 1.45627 0.91346 1.26648 1.03178 0.94842 0.91702 1.69687 1.34226 1.06605 1.36740 0.85698 0.78081 0.79546 0.78961 1.21247 1.19924 1.16413 1.20957 1.00312 0.93495 1.07640 1.22573 0.83935 1.00478 0.98065 1.23286 0.96113 0.98387 0.85058 1.87806 1.40837 1.50389 1.48986 0.88722 0.90060 0.92420 0.88914 0.90922 0.90038 0.90805 0.86188 0.87289 0.83713 0.82892 0.86538 0.89668 0.90110 0.88211 0.89412 0.93227 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.38 71.98 0.60 -2.13 16 2 C 0.10 1.95 3.89 30.82 0.12 2.07 16 3 H 0.10 1.81 8.06 -2.38 -0.02 1.79 16 4 O -0.39 -9.34 11.03 -148.98 -1.64 -10.98 16 5 C 0.06 1.35 7.78 72.69 0.57 1.92 16 6 C -0.19 -4.84 6.01 31.85 0.19 -4.65 16 7 C 0.08 1.76 0.79 -10.21 -0.01 1.75 16 8 C 0.07 1.68 2.56 86.04 0.22 1.90 16 9 N -0.61 -17.61 2.92 -821.08 -2.40 -20.01 16 10 C 0.56 22.14 7.33 86.80 0.64 22.78 16 11 O -0.58 -27.32 16.45 -3.86 -0.06 -27.38 16 12 C -0.11 -4.41 5.22 -20.13 -0.11 -4.51 16 13 C -0.19 -6.17 7.35 22.70 0.17 -6.00 16 14 C -0.08 -2.46 10.01 22.18 0.22 -2.24 16 15 C -0.19 -7.78 9.78 22.77 0.22 -7.55 16 16 C 0.07 3.38 5.15 -21.32 -0.11 3.27 16 17 C -0.48 -26.38 9.60 23.47 0.23 -26.16 16 18 H 0.07 3.99 8.06 -2.91 -0.02 3.96 16 19 C 0.05 2.79 5.45 85.25 0.46 3.26 16 20 N -0.85 -47.22 13.93 21.83 0.30 -46.92 16 21 Si 0.95 44.84 24.41 68.60 1.67 46.52 16 22 H -0.29 -14.11 6.71 99.48 0.67 -13.44 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.24 -10.98 6.67 99.48 0.66 -10.32 16 25 C -0.20 -9.98 6.64 23.01 0.15 -9.83 16 26 C 0.07 1.65 6.64 86.49 0.57 2.23 16 27 C 0.05 0.93 6.79 72.22 0.49 1.42 16 28 O -0.36 -7.64 10.23 -148.97 -1.52 -9.17 16 29 H 0.09 1.14 6.47 -2.39 -0.02 1.13 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.13 7.53 -2.38 -0.02 1.11 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.08 2.14 6.02 -2.39 -0.01 2.12 16 35 H 0.07 2.20 7.84 -2.38 -0.02 2.18 16 36 H 0.12 3.03 3.13 -2.39 -0.01 3.02 16 37 H 0.11 1.88 7.13 -2.38 -0.02 1.86 16 38 H 0.15 3.57 6.39 -2.91 -0.02 3.55 16 39 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 42 H 0.08 4.34 4.41 -2.91 -0.01 4.33 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 2.33 7.10 -2.39 -0.02 2.31 16 45 H 0.05 1.07 6.17 -2.39 -0.01 1.06 16 46 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -68.68 352.25 1.91 -66.77 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.93 Total: 23.64 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.63 Total: -22.48 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -2.09 Total: -66.93 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -3.23 Total: -47.53 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.52 kcal Total: -68.68 1.91 -66.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279471181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.964 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds