Wall clock time and date at job start Tue Mar 31 2020 17:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.44060 * 2 1 4 4 O 1.44556 * 110.39405 * 122.35982 * 2 1 3 5 5 C 1.44480 * 105.36975 * 158.78565 * 4 2 1 6 6 C 1.54603 * 104.81896 * 319.84419 * 5 4 2 7 7 C 1.53932 * 110.39406 * 237.64113 * 2 1 3 8 8 C 1.52642 * 110.19956 * 335.98638 * 7 2 1 9 9 N 1.47287 * 108.39191 * 173.30433 * 8 7 2 10 10 C 1.34774 * 121.04835 * 130.43154 * 9 8 7 11 11 O 1.21586 * 119.99974 * 175.72571 * 10 9 8 12 12 C 1.47639 * 120.00108 * 355.72559 * 10 9 8 13 13 C 1.40013 * 119.89714 * 224.56262 * 12 10 9 14 14 C 1.36321 * 120.10802 * 179.71468 * 13 12 10 15 15 C 1.40891 * 119.88801 * 0.58209 * 14 13 12 16 16 C 1.41111 * 120.09929 * 179.66797 * 15 14 13 17 17 H 1.07998 * 119.99989 * 205.27307 * 16 15 14 18 18 C 1.40218 * 120.00042 * 25.28146 * 16 15 14 19 19 N 1.30646 * 120.00134 * 16.93948 * 18 16 15 20 20 Si 1.86801 * 120.00076 * 196.93742 * 18 16 15 21 21 H 1.48501 * 109.46757 * 59.99978 * 20 18 16 22 22 H 1.48504 * 109.47269 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47101 * 299.99897 * 20 18 16 24 24 C 1.40885 * 119.79576 * 359.69809 * 15 14 13 25 25 C 1.36315 * 119.89139 * 359.97438 * 24 15 14 26 26 C 1.47150 * 117.89925 * 310.45324 * 9 8 7 27 27 C 1.53274 * 108.53606 * 51.03835 * 26 9 8 28 28 O 1.42218 * 110.47136 * 98.80786 * 7 2 1 29 29 H 1.09008 * 109.46553 * 182.35793 * 1 2 3 30 30 H 1.09000 * 109.47076 * 302.35536 * 1 2 3 31 31 H 1.08991 * 109.47209 * 62.36173 * 1 2 3 32 32 H 1.09001 * 110.36221 * 201.00783 * 5 4 2 33 33 H 1.08993 * 110.36756 * 78.68256 * 5 4 2 34 34 H 1.09003 * 110.54702 * 265.30208 * 6 5 4 35 35 H 1.08999 * 110.54916 * 142.50182 * 6 5 4 36 36 H 1.08999 * 109.68520 * 53.57697 * 8 7 2 37 37 H 1.09003 * 109.68281 * 293.02904 * 8 7 2 38 38 H 1.07998 * 119.94114 * 0.02562 * 13 12 10 39 39 H 1.07996 * 120.05237 * 180.25074 * 14 13 12 40 40 H 0.97001 * 119.99979 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.05361 * 180.02562 * 24 15 14 42 42 H 1.08003 * 119.94878 * 180.02562 * 25 24 15 43 43 H 1.09000 * 109.62823 * 170.74879 * 26 9 8 44 44 H 1.08997 * 109.63437 * 291.31972 * 26 9 8 45 45 H 1.09000 * 109.51612 * 67.10512 * 27 26 9 46 46 H 1.09001 * 109.51733 * 187.25923 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7252 1.1445 5 6 3.3845 -1.1009 0.7956 6 6 3.3080 -1.5151 -0.6919 7 6 2.0664 -0.7722 -1.2188 8 6 1.0235 -1.7732 -1.7093 9 7 1.5082 -2.3716 -2.9647 10 6 1.5127 -3.7077 -3.1416 11 8 1.8434 -4.1780 -4.2129 12 6 1.1159 -4.6002 -2.0345 13 6 1.8750 -5.7425 -1.7527 14 6 1.5159 -6.5665 -0.7278 15 6 0.3719 -6.2736 0.0407 16 6 -0.0078 -7.1273 1.0982 17 1 -1.0392 -7.1673 1.4161 18 6 0.9539 -7.9234 1.7364 19 7 2.2241 -7.6509 1.5976 20 14 0.4191 -9.3739 2.7850 21 1 -0.3443 -10.3345 1.9486 22 1 1.6176 -10.0482 3.3454 23 1 -0.4412 -8.8915 3.8951 24 6 -0.3921 -5.1262 -0.2504 25 6 -0.0213 -4.3047 -1.2730 26 6 1.9879 -1.4647 -4.0196 27 6 3.0083 -0.4998 -3.4057 28 8 2.4310 0.1285 -2.2572 29 1 -0.3633 -1.0269 0.0423 30 1 -0.3633 0.5500 0.8681 31 1 -0.3633 0.4767 -0.9103 32 1 3.7144 -1.9409 1.4069 33 1 4.0580 -0.2530 0.9192 34 1 3.1758 -2.5933 -0.7826 35 1 4.2020 -1.1922 -1.2255 36 1 0.0783 -1.2607 -1.8878 37 1 0.8830 -2.5533 -0.9610 38 1 2.7492 -5.9684 -2.3451 39 1 2.1044 -7.4451 -0.5086 40 1 2.8894 -8.2019 2.0388 41 1 -1.2696 -4.8975 0.3362 42 1 -0.6061 -3.4246 -1.4967 43 1 2.4622 -2.0435 -4.8122 44 1 1.1490 -0.9002 -4.4266 45 1 3.8995 -1.0527 -3.1087 46 1 3.2781 0.2600 -4.1392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279520194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:42 Heat of formation + Delta-G solvation = -90.388778 kcal Electronic energy + Delta-G solvation = -30040.949812 eV Core-core repulsion = 26088.739827 eV Total energy + Delta-G solvation = -3952.209985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.00024 -39.04694 -37.69313 -36.98635 -34.54546 -33.86859 -32.73260 -31.42480 -30.36145 -29.77584 -28.92857 -26.72399 -25.81162 -25.04762 -23.46928 -21.96549 -21.51016 -20.93197 -19.81661 -18.84150 -17.58870 -17.29579 -16.62868 -16.09378 -15.77763 -15.50762 -15.47172 -15.29420 -14.77054 -14.46784 -14.08291 -13.90939 -13.87384 -13.49277 -13.09336 -12.72381 -12.52111 -12.47624 -12.33572 -12.23309 -12.05097 -11.89442 -11.68270 -11.39484 -11.28926 -11.22411 -11.06657 -10.99612 -10.91269 -10.65703 -10.42638 -10.10683 -10.01285 -9.73609 -9.57040 -9.34912 -9.04354 -8.26294 -7.72213 -7.54032 -7.00497 -4.59659 2.29617 2.92091 2.95163 2.96852 3.00440 3.22274 3.50291 3.62421 3.76300 3.88432 4.44544 4.47207 4.65276 4.74576 4.91638 5.03250 5.11392 5.16299 5.22966 5.31886 5.46627 5.51277 5.53233 5.57726 5.58374 5.75741 5.77067 5.84692 5.86755 5.93049 5.98882 6.06816 6.11522 6.16610 6.20746 6.69080 6.72759 6.81271 6.83816 7.00801 7.08427 7.16305 7.41129 7.55818 7.71450 7.83952 7.95497 8.06515 8.41146 8.63733 8.73480 8.83427 9.91795 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.004049 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.159049 B = 6913.158575 C = 7858.169463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 H 0.080 0.920 4 O -0.360 6.360 5 C 0.050 3.950 6 C -0.179 4.179 7 C 0.077 3.923 8 C 0.082 3.918 9 N -0.620 5.620 10 C 0.581 3.419 11 O -0.563 6.563 12 C -0.278 4.278 13 C -0.044 4.044 14 C -0.175 4.175 15 C 0.127 3.873 16 C -0.446 4.446 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.774 5.774 20 Si 0.912 3.088 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.229 4.229 25 C -0.058 4.058 26 C 0.078 3.922 27 C 0.048 3.952 28 O -0.368 6.368 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 12.675 -1.757 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.032 3.968 3 H 0.098 0.902 4 O -0.280 6.280 5 C -0.026 4.026 6 C -0.217 4.217 7 C 0.037 3.963 8 C -0.041 4.041 9 N -0.355 5.355 10 C 0.376 3.624 11 O -0.442 6.442 12 C -0.282 4.282 13 C -0.064 4.064 14 C -0.194 4.194 15 C 0.124 3.876 16 C -0.473 4.473 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.397 5.397 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.249 4.249 25 C -0.076 4.076 26 C -0.045 4.045 27 C -0.030 4.030 28 O -0.287 6.287 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.859 12.482 -2.036 12.783 hybrid contribution 0.155 -0.761 0.221 0.808 sum 2.014 11.721 -1.815 12.030 Atomic orbital electron populations 1.21935 0.92557 1.03791 1.02617 1.22668 0.95592 0.95410 0.83121 0.90249 1.89244 1.27713 1.74277 1.36717 1.23360 0.84545 0.99883 0.94860 1.23486 0.98351 1.02933 0.96894 1.22798 0.94559 0.90299 0.88687 1.22866 0.95761 0.97374 0.88081 1.48142 1.65630 1.05865 1.15881 1.18819 0.75155 0.80528 0.87943 1.90651 1.50588 1.75258 1.27737 1.18775 1.03989 1.01454 1.04028 1.20325 0.97148 0.92803 0.96101 1.20987 1.00910 1.01121 0.96392 1.17738 0.90285 0.89381 0.90195 1.19769 0.95995 1.18242 1.13325 0.89852 1.26060 0.94351 0.97797 0.96345 1.69725 1.01757 1.34322 1.33944 0.86284 0.79323 0.80729 0.80063 1.18519 1.20078 1.18687 1.20680 1.04093 0.97797 1.02306 1.20387 0.95141 0.97495 0.94625 1.22126 0.98047 0.92462 0.91896 1.23033 0.95414 0.96667 0.87850 1.87789 1.81304 1.33128 1.26436 0.90755 0.91409 0.90771 0.88445 0.92315 0.88980 0.90038 0.90780 0.85637 0.88957 0.86117 0.90233 0.88385 0.88875 0.88372 0.91393 0.92429 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.29 37.16 0.31 -1.42 16 2 C 0.09 1.17 3.59 -26.25 -0.09 1.08 16 3 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 4 O -0.36 -5.41 11.35 -35.23 -0.40 -5.81 16 5 C 0.05 0.67 7.65 38.00 0.29 0.96 16 6 C -0.18 -2.53 5.78 -25.38 -0.15 -2.68 16 7 C 0.08 1.07 0.96 -89.81 -0.09 0.98 16 8 C 0.08 1.25 2.50 -3.80 -0.01 1.24 16 9 N -0.62 -10.52 2.91 -173.77 -0.51 -11.02 16 10 C 0.58 12.20 7.30 -12.42 -0.09 12.11 16 11 O -0.56 -13.27 16.47 5.29 0.09 -13.19 16 12 C -0.28 -6.20 5.22 -104.73 -0.55 -6.75 16 13 C -0.04 -1.05 9.61 -39.61 -0.38 -1.43 16 14 C -0.17 -4.36 8.63 -39.27 -0.34 -4.70 16 15 C 0.13 3.18 5.57 -106.80 -0.60 2.59 16 16 C -0.45 -10.98 9.05 -37.75 -0.34 -11.32 16 17 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 18 C 0.08 1.76 5.15 -17.31 -0.09 1.67 16 19 N -0.77 -18.62 10.94 55.56 0.61 -18.01 16 20 Si 0.91 17.37 29.59 -169.99 -5.03 12.34 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 22 H -0.28 -5.13 7.11 56.52 0.40 -4.72 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 24 C -0.23 -5.22 9.73 -39.27 -0.38 -5.61 16 25 C -0.06 -1.22 7.26 -39.61 -0.29 -1.51 16 26 C 0.08 1.09 6.61 -3.55 -0.02 1.06 16 27 C 0.05 0.56 6.70 37.30 0.25 0.81 16 28 O -0.37 -4.84 10.19 -35.23 -0.36 -5.20 16 29 H 0.07 0.92 6.75 -51.92 -0.35 0.57 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.55 7.67 -51.93 -0.40 1.15 16 35 H 0.08 1.05 6.62 -51.93 -0.34 0.71 16 36 H 0.07 1.03 6.20 -51.93 -0.32 0.70 16 37 H 0.13 2.20 4.27 -51.93 -0.22 1.98 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 40 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 41 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.09 1.72 6.49 -52.48 -0.34 1.38 16 43 H 0.10 1.44 7.11 -51.93 -0.37 1.07 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.70 6.50 -51.93 -0.34 0.37 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -28.45 358.93 -9.09 -37.54 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.33 Total: 10.86 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.56 Total: -12.91 kcal Atomic # 7 Polarization: -29.14 SS G_CDS: 0.10 Total: -29.04 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.67 Total: -24.20 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.45 -9.09 -37.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.848 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds