Wall clock time and date at job start Tue Mar 31 2020 17:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.44060 * 2 1 4 4 O 1.44556 * 110.39405 * 122.35982 * 2 1 3 5 5 C 1.44480 * 105.36975 * 158.78565 * 4 2 1 6 6 C 1.54603 * 104.81896 * 319.84419 * 5 4 2 7 7 C 1.53932 * 110.39406 * 237.64113 * 2 1 3 8 8 C 1.52642 * 110.19956 * 335.98638 * 7 2 1 9 9 N 1.47287 * 108.39191 * 173.30433 * 8 7 2 10 10 C 1.34774 * 121.04835 * 130.43154 * 9 8 7 11 11 O 1.21586 * 119.99974 * 175.72571 * 10 9 8 12 12 C 1.47639 * 120.00108 * 355.72559 * 10 9 8 13 13 C 1.40013 * 119.89714 * 224.56262 * 12 10 9 14 14 C 1.36321 * 120.10802 * 179.71468 * 13 12 10 15 15 C 1.40891 * 119.88801 * 0.58209 * 14 13 12 16 16 C 1.41111 * 120.09929 * 179.66797 * 15 14 13 17 17 H 1.07998 * 119.99989 * 205.27307 * 16 15 14 18 18 C 1.40218 * 120.00042 * 25.28146 * 16 15 14 19 19 N 1.30646 * 120.00134 * 16.93948 * 18 16 15 20 20 Si 1.86801 * 120.00076 * 196.93742 * 18 16 15 21 21 H 1.48501 * 109.46757 * 59.99978 * 20 18 16 22 22 H 1.48504 * 109.47269 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47101 * 299.99897 * 20 18 16 24 24 C 1.40885 * 119.79576 * 359.69809 * 15 14 13 25 25 C 1.36315 * 119.89139 * 359.97438 * 24 15 14 26 26 C 1.47150 * 117.89925 * 310.45324 * 9 8 7 27 27 C 1.53274 * 108.53606 * 51.03835 * 26 9 8 28 28 O 1.42218 * 110.47136 * 98.80786 * 7 2 1 29 29 H 1.09008 * 109.46553 * 182.35793 * 1 2 3 30 30 H 1.09000 * 109.47076 * 302.35536 * 1 2 3 31 31 H 1.08991 * 109.47209 * 62.36173 * 1 2 3 32 32 H 1.09001 * 110.36221 * 201.00783 * 5 4 2 33 33 H 1.08993 * 110.36756 * 78.68256 * 5 4 2 34 34 H 1.09003 * 110.54702 * 265.30208 * 6 5 4 35 35 H 1.08999 * 110.54916 * 142.50182 * 6 5 4 36 36 H 1.08999 * 109.68520 * 53.57697 * 8 7 2 37 37 H 1.09003 * 109.68281 * 293.02904 * 8 7 2 38 38 H 1.07998 * 119.94114 * 0.02562 * 13 12 10 39 39 H 1.07996 * 120.05237 * 180.25074 * 14 13 12 40 40 H 0.97001 * 119.99979 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.05361 * 180.02562 * 24 15 14 42 42 H 1.08003 * 119.94878 * 180.02562 * 25 24 15 43 43 H 1.09000 * 109.62823 * 170.74879 * 26 9 8 44 44 H 1.08997 * 109.63437 * 291.31972 * 26 9 8 45 45 H 1.09000 * 109.51612 * 67.10512 * 27 26 9 46 46 H 1.09001 * 109.51733 * 187.25923 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7252 1.1445 5 6 3.3845 -1.1009 0.7956 6 6 3.3080 -1.5151 -0.6919 7 6 2.0664 -0.7722 -1.2188 8 6 1.0235 -1.7732 -1.7093 9 7 1.5082 -2.3716 -2.9647 10 6 1.5127 -3.7077 -3.1416 11 8 1.8434 -4.1780 -4.2129 12 6 1.1159 -4.6002 -2.0345 13 6 1.8750 -5.7425 -1.7527 14 6 1.5159 -6.5665 -0.7278 15 6 0.3719 -6.2736 0.0407 16 6 -0.0078 -7.1273 1.0982 17 1 -1.0392 -7.1673 1.4161 18 6 0.9539 -7.9234 1.7364 19 7 2.2241 -7.6509 1.5976 20 14 0.4191 -9.3739 2.7850 21 1 -0.3443 -10.3345 1.9486 22 1 1.6176 -10.0482 3.3454 23 1 -0.4412 -8.8915 3.8951 24 6 -0.3921 -5.1262 -0.2504 25 6 -0.0213 -4.3047 -1.2730 26 6 1.9879 -1.4647 -4.0196 27 6 3.0083 -0.4998 -3.4057 28 8 2.4310 0.1285 -2.2572 29 1 -0.3633 -1.0269 0.0423 30 1 -0.3633 0.5500 0.8681 31 1 -0.3633 0.4767 -0.9103 32 1 3.7144 -1.9409 1.4069 33 1 4.0580 -0.2530 0.9192 34 1 3.1758 -2.5933 -0.7826 35 1 4.2020 -1.1922 -1.2255 36 1 0.0783 -1.2607 -1.8878 37 1 0.8830 -2.5533 -0.9610 38 1 2.7492 -5.9684 -2.3451 39 1 2.1044 -7.4451 -0.5086 40 1 2.8894 -8.2019 2.0388 41 1 -1.2696 -4.8975 0.3362 42 1 -0.6061 -3.4246 -1.4967 43 1 2.4622 -2.0435 -4.8122 44 1 1.1490 -0.9002 -4.4266 45 1 3.8995 -1.0527 -3.1087 46 1 3.2781 0.2600 -4.1392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279520194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:41 Heat of formation + Delta-G solvation = -107.126532 kcal Electronic energy + Delta-G solvation = -30041.675615 eV Core-core repulsion = 26088.739827 eV Total energy + Delta-G solvation = -3952.935789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.20207 -40.54535 -39.13159 -38.48195 -36.01168 -35.56096 -33.82865 -32.50233 -32.05328 -31.54342 -30.21958 -28.11954 -27.36708 -26.14220 -24.74039 -23.38505 -23.03240 -22.48040 -21.18937 -20.14056 -19.37639 -18.64716 -17.94531 -17.39905 -17.17742 -17.00441 -16.65702 -16.39647 -16.15466 -15.92125 -15.56300 -15.24489 -15.12688 -14.85319 -14.58939 -14.32920 -14.07201 -13.81525 -13.69629 -13.49155 -13.40196 -13.21960 -13.05333 -12.83315 -12.77418 -12.54235 -12.37497 -12.30867 -12.13359 -11.96200 -11.80484 -11.63555 -11.38747 -11.16912 -11.10789 -10.82636 -10.67880 -9.65689 -9.54164 -9.34383 -8.76644 -6.46802 0.52372 1.09700 1.38164 1.44076 1.51175 1.80805 1.99362 2.16498 2.46226 2.68058 2.85099 3.36509 3.50773 3.62650 3.67890 3.80441 3.91369 4.04446 4.10653 4.17298 4.25258 4.31358 4.33661 4.34865 4.49176 4.50188 4.56886 4.63394 4.68852 4.74814 4.85154 4.88115 4.93998 4.94787 5.01747 5.02345 5.16565 5.24497 5.27656 5.44916 5.57507 5.68452 5.74860 5.94398 5.99317 6.11006 6.19365 6.34523 6.55386 6.78614 6.88409 7.20688 8.18431 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.004049 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.159049 B = 6913.158575 C = 7858.169463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 H 0.096 0.904 4 O -0.383 6.383 5 C 0.050 3.950 6 C -0.178 4.178 7 C 0.083 3.917 8 C 0.080 3.920 9 N -0.612 5.612 10 C 0.579 3.421 11 O -0.596 6.596 12 C -0.283 4.283 13 C -0.055 4.055 14 C -0.194 4.194 15 C 0.101 3.899 16 C -0.476 4.476 17 H 0.089 0.911 18 C 0.037 3.963 19 N -0.805 5.805 20 Si 0.985 3.015 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.254 1.254 24 C -0.240 4.240 25 C -0.045 4.045 26 C 0.072 3.928 27 C 0.051 3.949 28 O -0.363 6.363 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.294 0.706 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 14.943 -1.594 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.032 3.968 3 H 0.114 0.886 4 O -0.303 6.303 5 C -0.026 4.026 6 C -0.216 4.216 7 C 0.041 3.959 8 C -0.042 4.042 9 N -0.345 5.345 10 C 0.373 3.627 11 O -0.479 6.479 12 C -0.287 4.287 13 C -0.074 4.074 14 C -0.214 4.214 15 C 0.098 3.902 16 C -0.504 4.504 17 H 0.107 0.893 18 C -0.181 4.181 19 N -0.429 5.429 20 Si 0.805 3.195 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.178 1.178 24 C -0.259 4.259 25 C -0.063 4.063 26 C -0.050 4.050 27 C -0.026 4.026 28 O -0.281 6.281 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.191 14.807 -1.869 14.972 hybrid contribution 0.408 -1.343 0.098 1.407 sum 1.600 13.464 -1.771 13.673 Atomic orbital electron populations 1.21979 0.91412 1.03339 1.04197 1.22840 0.96564 0.95620 0.81786 0.88592 1.89224 1.28462 1.74771 1.37843 1.23429 0.84589 1.00684 0.93942 1.23432 0.99386 1.00792 0.98020 1.22698 0.93689 0.90128 0.89341 1.22948 0.97450 0.97105 0.86675 1.48106 1.64296 1.04904 1.17178 1.18579 0.75262 0.81937 0.86944 1.90628 1.52272 1.76275 1.28678 1.19015 1.03995 1.01260 1.04435 1.20402 0.97473 0.93566 0.95977 1.20900 1.01654 1.01320 0.97484 1.18071 0.90770 0.90545 0.90794 1.20063 0.96687 1.19628 1.13997 0.89323 1.26919 0.94048 0.99914 0.97252 1.69778 1.02886 1.35454 1.34788 0.85198 0.79102 0.76939 0.78287 1.18402 1.19156 1.17830 1.20901 1.04477 0.97427 1.03092 1.20611 0.94520 0.97790 0.93416 1.22418 0.99415 0.92180 0.90965 1.23181 0.94164 0.97211 0.88047 1.87809 1.81220 1.32683 1.26409 0.92138 0.90242 0.88878 0.89294 0.89669 0.92524 0.88757 0.88511 0.88034 0.89311 0.87703 0.89492 0.86871 0.85824 0.89330 0.89224 0.93019 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.29 71.98 0.60 -2.44 16 2 C 0.09 2.10 3.59 30.91 0.11 2.21 16 3 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 4 O -0.38 -11.03 11.35 -148.98 -1.69 -12.72 16 5 C 0.05 1.28 7.65 72.53 0.55 1.84 16 6 C -0.18 -4.92 5.78 31.47 0.18 -4.74 16 7 C 0.08 2.10 0.96 -10.27 -0.01 2.09 16 8 C 0.08 2.33 2.50 86.11 0.22 2.54 16 9 N -0.61 -20.02 2.91 -821.94 -2.39 -22.41 16 10 C 0.58 24.46 7.30 86.73 0.63 25.09 16 11 O -0.60 -28.51 16.47 -3.99 -0.07 -28.57 16 12 C -0.28 -12.90 5.22 -19.93 -0.10 -13.00 16 13 C -0.05 -2.73 9.61 22.25 0.21 -2.52 16 14 C -0.19 -10.23 8.63 22.47 0.19 -10.03 16 15 C 0.10 5.25 5.57 -21.28 -0.12 5.13 16 16 C -0.48 -24.10 9.05 23.46 0.21 -23.89 16 17 H 0.09 4.23 7.90 -2.91 -0.02 4.20 16 18 C 0.04 1.75 5.15 85.35 0.44 2.19 16 19 N -0.81 -40.02 10.94 21.87 0.24 -39.78 16 20 Si 0.98 35.69 29.59 68.60 2.03 37.72 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 22 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 24 C -0.24 -11.08 9.73 22.47 0.22 -10.86 16 25 C -0.04 -1.90 7.26 22.25 0.16 -1.73 16 26 C 0.07 1.84 6.61 86.35 0.57 2.41 16 27 C 0.05 1.03 6.70 72.07 0.48 1.52 16 28 O -0.36 -8.25 10.19 -148.98 -1.52 -9.77 16 29 H 0.06 1.38 6.75 -2.38 -0.02 1.36 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.49 7.69 -2.39 -0.02 1.47 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.97 7.67 -2.39 -0.02 1.95 16 35 H 0.09 2.30 6.62 -2.39 -0.02 2.29 16 36 H 0.10 2.39 6.20 -2.39 -0.01 2.37 16 37 H 0.10 3.50 4.27 -2.39 -0.01 3.49 16 38 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.11 5.74 6.17 -2.91 -0.02 5.72 16 40 H 0.29 13.16 8.29 -92.71 -0.77 12.40 16 41 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.12 4.39 6.49 -2.91 -0.02 4.37 16 43 H 0.09 2.48 7.11 -2.39 -0.02 2.47 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 1.14 6.50 -2.39 -0.02 1.13 16 46 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -63.61 358.93 2.16 -61.45 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 1.00 Total: 38.27 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 4.55 Total: -24.18 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -2.15 Total: -62.19 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -3.27 Total: -51.06 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -63.61 2.16 -61.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.680 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds