Wall clock time and date at job start Tue Mar 31 2020 17:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.05359 * 2 1 4 4 O 1.43901 * 109.91029 * 121.17906 * 2 1 3 5 5 C 1.44424 * 106.99710 * 145.72403 * 4 2 1 6 6 C 1.55106 * 103.55975 * 320.27625 * 5 4 2 7 7 C 1.53574 * 109.91032 * 238.82320 * 2 1 3 8 8 C 1.52250 * 110.42770 * 120.42537 * 7 2 1 9 9 N 1.47276 * 108.61373 * 186.47957 * 8 7 2 10 10 C 1.34773 * 121.05099 * 229.54368 * 9 8 7 11 11 O 1.21585 * 120.00057 * 5.82768 * 10 9 8 12 12 C 1.47647 * 119.99785 * 185.82683 * 10 9 8 13 13 C 1.40016 * 119.89609 * 27.08538 * 12 10 9 14 14 C 1.36321 * 120.10344 * 179.97438 * 13 12 10 15 15 C 1.40885 * 119.89218 * 0.02562 * 14 13 12 16 16 C 1.41112 * 120.09840 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99576 * 152.13363 * 16 15 14 18 18 C 1.40225 * 120.00183 * 332.12780 * 16 15 14 19 19 N 1.30639 * 119.99971 * 162.72398 * 18 16 15 20 20 Si 1.86806 * 119.99708 * 342.72404 * 18 16 15 21 21 H 1.48499 * 109.46790 * 92.15028 * 20 18 16 22 22 H 1.48498 * 109.46785 * 212.14861 * 20 18 16 23 23 H 1.48502 * 109.47346 * 332.14799 * 20 18 16 24 24 C 1.40884 * 119.79774 * 359.97438 * 15 14 13 25 25 C 1.36323 * 119.88815 * 0.02562 * 24 15 14 26 26 C 1.47167 * 117.89367 * 49.27561 * 9 8 7 27 27 C 1.53273 * 108.52293 * 309.19840 * 26 9 8 28 28 O 1.42228 * 110.66343 * 357.25819 * 7 2 1 29 29 H 1.08998 * 109.46708 * 181.17869 * 1 2 3 30 30 H 1.08997 * 109.47097 * 301.18022 * 1 2 3 31 31 H 1.08996 * 109.46982 * 61.17785 * 1 2 3 32 32 H 1.09002 * 110.60874 * 78.79426 * 5 4 2 33 33 H 1.09001 * 110.60097 * 201.60319 * 5 4 2 34 34 H 1.09007 * 110.93142 * 278.44330 * 6 5 4 35 35 H 1.08996 * 110.93266 * 154.78002 * 6 5 4 36 36 H 1.09002 * 109.62354 * 66.65891 * 8 7 2 37 37 H 1.09003 * 109.51928 * 306.24724 * 8 7 2 38 38 H 1.07999 * 119.94299 * 359.97438 * 13 12 10 39 39 H 1.07997 * 120.04488 * 180.27968 * 14 13 12 40 40 H 0.96999 * 120.00167 * 180.02562 * 19 18 16 41 41 H 1.07990 * 120.05623 * 180.02562 * 24 15 14 42 42 H 1.07999 * 119.94217 * 179.97438 * 25 24 15 43 43 H 1.08999 * 109.63064 * 68.91405 * 26 9 8 44 44 H 1.09008 * 109.62369 * 189.48736 * 26 9 8 45 45 H 1.08997 * 109.51679 * 172.74636 * 27 26 9 46 46 H 1.09008 * 109.50802 * 292.89176 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 8 2.0201 -0.7005 1.1576 5 6 3.2369 -1.3702 0.7619 6 6 2.9188 -1.8899 -0.6644 7 6 2.0530 -0.7475 -1.2354 8 6 2.9133 0.1738 -2.0892 9 7 3.2633 -0.5303 -3.3345 10 6 4.5382 -0.5830 -3.7685 11 8 5.4343 -0.1371 -3.0783 12 6 4.8466 -1.1822 -5.0822 13 6 3.8811 -1.1756 -6.0962 14 6 4.1614 -1.7272 -7.3109 15 6 5.4249 -2.3049 -7.5449 16 6 5.7196 -2.8776 -8.8005 17 1 6.7398 -2.9084 -9.1538 18 6 4.6881 -3.4067 -9.5893 19 7 4.8853 -3.6246 -10.8622 20 14 3.0319 -3.8001 -8.8199 21 1 2.1329 -2.6256 -8.9528 22 1 2.4285 -4.9664 -9.5133 23 1 3.2178 -4.1210 -7.3819 24 6 6.3932 -2.3091 -6.5215 25 6 6.1036 -1.7551 -5.3101 26 6 2.1778 -1.1796 -4.0868 27 6 1.3771 -2.0617 -3.1224 28 8 0.9741 -1.2806 -1.9935 29 1 -0.3633 -1.0274 0.0211 30 1 -0.3633 0.5320 0.8792 31 1 -0.3633 0.4954 -0.9003 32 1 4.0706 -0.6684 0.7374 33 1 3.4546 -2.1994 1.4352 34 1 2.3552 -2.8221 -0.6226 35 1 3.8320 -2.0145 -1.2462 36 1 3.8222 0.4332 -1.5463 37 1 2.3544 1.0797 -2.3243 38 1 2.9127 -0.7329 -5.9156 39 1 3.4176 -1.7176 -8.0938 40 1 4.1716 -3.9902 -11.4080 41 1 7.3631 -2.7504 -6.6965 42 1 6.8451 -1.7582 -4.5248 43 1 1.5247 -0.4200 -4.5164 44 1 2.6002 -1.7951 -4.8811 45 1 0.4942 -2.4490 -3.6310 46 1 1.9986 -2.8922 -2.7873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279520196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:46 Heat of formation + Delta-G solvation = -80.985687 kcal Electronic energy + Delta-G solvation = -29505.191113 eV Core-core repulsion = 25553.388877 eV Total energy + Delta-G solvation = -3951.802237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13872 -39.35670 -37.78791 -37.28461 -34.70665 -33.95551 -32.73214 -31.72770 -30.80812 -30.16244 -29.10518 -27.61239 -25.79581 -24.45572 -23.69664 -22.45722 -21.74390 -21.24259 -20.01996 -19.06135 -17.72531 -17.19693 -16.82736 -16.53152 -16.25297 -15.92328 -15.35189 -15.17592 -14.87119 -14.67871 -14.33468 -14.00112 -13.95326 -13.69762 -13.16234 -13.10439 -12.89742 -12.69168 -12.61646 -12.42374 -12.32440 -12.06716 -11.92939 -11.61666 -11.51120 -11.23714 -11.10855 -11.03056 -10.96085 -10.64073 -10.50145 -10.33173 -10.11449 -9.88559 -9.74298 -9.41831 -9.14278 -8.41261 -8.00222 -7.84565 -7.30260 -4.81186 1.93263 2.54938 2.85667 2.99723 3.07390 3.09917 3.40425 3.47894 3.62348 3.71011 4.29366 4.31124 4.43926 4.61209 4.81668 4.90547 5.01364 5.02501 5.11942 5.16281 5.19643 5.26492 5.42024 5.42457 5.50486 5.57082 5.66299 5.67787 5.72739 5.77471 5.81434 5.84048 5.89821 5.91853 6.15222 6.33063 6.52175 6.57284 6.64563 6.65797 6.86686 7.00373 7.15613 7.26708 7.39978 7.58782 7.77434 7.84798 8.02102 8.36279 8.45690 8.70503 9.69517 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003366 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.647576 B = 8316.738412 C = 9098.280929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.080 0.920 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.178 4.178 7 C 0.079 3.921 8 C 0.097 3.903 9 N -0.620 5.620 10 C 0.579 3.421 11 O -0.564 6.564 12 C -0.286 4.286 13 C -0.051 4.051 14 C -0.253 4.253 15 C 0.106 3.894 16 C -0.420 4.420 17 H 0.096 0.904 18 C 0.079 3.921 19 N -0.784 5.784 20 Si 0.921 3.079 21 H -0.265 1.265 22 H -0.289 1.289 23 H -0.242 1.242 24 C -0.221 4.221 25 C -0.017 4.017 26 C 0.054 3.946 27 C 0.043 3.957 28 O -0.359 6.359 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.292 0.708 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 2.214 14.027 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.031 3.969 3 H 0.097 0.903 4 O -0.291 6.291 5 C -0.027 4.027 6 C -0.215 4.215 7 C 0.038 3.962 8 C -0.026 4.026 9 N -0.355 5.355 10 C 0.375 3.625 11 O -0.445 6.445 12 C -0.291 4.291 13 C -0.069 4.069 14 C -0.272 4.272 15 C 0.102 3.898 16 C -0.447 4.447 17 H 0.114 0.886 18 C -0.143 4.143 19 N -0.405 5.405 20 Si 0.747 3.253 21 H -0.191 1.191 22 H -0.216 1.216 23 H -0.165 1.165 24 C -0.240 4.240 25 C -0.036 4.036 26 C -0.068 4.068 27 C -0.034 4.034 28 O -0.278 6.278 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.400 2.386 14.335 17.307 hybrid contribution -0.339 -0.260 -0.423 0.601 sum -9.739 2.126 13.911 17.114 Atomic orbital electron populations 1.21619 0.92423 1.03363 1.01855 1.22584 0.96495 0.94855 0.82947 0.90252 1.88942 1.40028 1.67593 1.32488 1.23497 0.87686 0.96659 0.94877 1.23666 1.01406 0.99227 0.97236 1.22616 0.87645 0.93887 0.92055 1.21923 0.99974 0.94340 0.86353 1.47962 1.07580 1.55760 1.24162 1.18640 0.80419 0.77242 0.86220 1.90655 1.45333 1.49725 1.58772 1.18790 0.97842 1.18740 0.93704 1.20838 0.96591 0.96414 0.93084 1.20749 0.99414 1.09512 0.97549 1.17851 0.91159 0.88583 0.92180 1.19803 0.96954 1.29898 0.98023 0.88565 1.26417 1.01455 0.92494 0.93975 1.69592 1.35833 1.29075 1.06039 0.86187 0.79744 0.77733 0.81600 1.19150 1.21619 1.16507 1.20706 1.00648 1.09323 0.93332 1.20372 0.93703 0.93224 0.96351 1.23166 0.89657 0.97761 0.96263 1.23138 1.00070 0.93418 0.86820 1.87862 1.30328 1.68896 1.40703 0.91393 0.92382 0.90862 0.91663 0.88665 0.89656 0.89304 0.88145 0.91161 0.87154 0.87673 0.89702 0.87628 0.87901 0.90895 0.85611 0.87526 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.62 37.16 0.32 -1.03 16 2 C 0.09 0.99 3.73 -26.43 -0.10 0.90 16 3 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 4 O -0.37 -4.56 11.20 -35.23 -0.39 -4.96 16 5 C 0.05 0.54 7.73 38.27 0.30 0.83 16 6 C -0.18 -2.13 5.14 -24.94 -0.13 -2.26 16 7 C 0.08 0.95 0.96 -90.03 -0.09 0.86 16 8 C 0.10 1.31 4.95 -4.00 -0.02 1.29 16 9 N -0.62 -9.64 2.70 -173.99 -0.47 -10.11 16 10 C 0.58 11.19 7.48 -12.42 -0.09 11.09 16 11 O -0.56 -12.26 16.11 5.29 0.09 -12.18 16 12 C -0.29 -5.87 5.54 -104.73 -0.58 -6.45 16 13 C -0.05 -1.00 7.38 -39.61 -0.29 -1.29 16 14 C -0.25 -5.51 7.11 -39.27 -0.28 -5.78 16 15 C 0.11 2.48 5.17 -106.80 -0.55 1.92 16 16 C -0.42 -10.38 9.58 -37.75 -0.36 -10.74 16 17 H 0.10 2.49 8.06 -52.48 -0.42 2.06 16 18 C 0.08 1.88 5.43 -17.31 -0.09 1.79 16 19 N -0.78 -18.95 13.92 55.56 0.77 -18.17 16 20 Si 0.92 18.52 24.45 -169.99 -4.16 14.36 16 21 H -0.27 -5.10 6.54 56.52 0.37 -4.73 16 22 H -0.29 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.24 -4.91 6.90 56.52 0.39 -4.52 16 24 C -0.22 -4.88 9.73 -39.27 -0.38 -5.26 16 25 C -0.02 -0.37 9.52 -39.61 -0.38 -0.74 16 26 C 0.05 0.73 4.83 -3.54 -0.02 0.71 16 27 C 0.04 0.49 6.74 37.30 0.25 0.74 16 28 O -0.36 -4.36 8.39 -35.23 -0.30 -4.66 16 29 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.00 7.70 -51.92 -0.40 0.60 16 35 H 0.09 1.22 7.61 -51.93 -0.40 0.82 16 36 H 0.10 1.45 7.04 -51.93 -0.37 1.09 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.84 5.10 -52.49 -0.27 1.58 16 39 H 0.11 2.24 4.31 -52.49 -0.23 2.01 16 40 H 0.29 6.31 8.29 -40.82 -0.34 5.98 16 41 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.10 2.09 7.86 -52.49 -0.41 1.67 16 43 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 44 H 0.13 1.86 4.23 -51.92 -0.22 1.64 16 45 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.70 6.97 -51.92 -0.36 0.34 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -27.34 354.22 -8.03 -35.36 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.41 Total: 8.43 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.49 Total: -13.42 kcal Atomic # 7 Polarization: -28.59 SS G_CDS: 0.30 Total: -28.29 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.60 Total: -21.79 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.16 Total: 14.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.34 -8.03 -35.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.621 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds