Wall clock time and date at job start Tue Mar 31 2020 17:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.05359 * 2 1 4 4 O 1.43901 * 109.91029 * 121.17906 * 2 1 3 5 5 C 1.44424 * 106.99710 * 145.72403 * 4 2 1 6 6 C 1.55106 * 103.55975 * 320.27625 * 5 4 2 7 7 C 1.53574 * 109.91032 * 238.82320 * 2 1 3 8 8 C 1.52250 * 110.42770 * 120.42537 * 7 2 1 9 9 N 1.47276 * 108.61373 * 186.47957 * 8 7 2 10 10 C 1.34773 * 121.05099 * 229.54368 * 9 8 7 11 11 O 1.21585 * 120.00057 * 5.82768 * 10 9 8 12 12 C 1.47647 * 119.99785 * 185.82683 * 10 9 8 13 13 C 1.40016 * 119.89609 * 27.08538 * 12 10 9 14 14 C 1.36321 * 120.10344 * 179.97438 * 13 12 10 15 15 C 1.40885 * 119.89218 * 0.02562 * 14 13 12 16 16 C 1.41112 * 120.09840 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99576 * 152.13363 * 16 15 14 18 18 C 1.40225 * 120.00183 * 332.12780 * 16 15 14 19 19 N 1.30639 * 119.99971 * 162.72398 * 18 16 15 20 20 Si 1.86806 * 119.99708 * 342.72404 * 18 16 15 21 21 H 1.48499 * 109.46790 * 92.15028 * 20 18 16 22 22 H 1.48498 * 109.46785 * 212.14861 * 20 18 16 23 23 H 1.48502 * 109.47346 * 332.14799 * 20 18 16 24 24 C 1.40884 * 119.79774 * 359.97438 * 15 14 13 25 25 C 1.36323 * 119.88815 * 0.02562 * 24 15 14 26 26 C 1.47167 * 117.89367 * 49.27561 * 9 8 7 27 27 C 1.53273 * 108.52293 * 309.19840 * 26 9 8 28 28 O 1.42228 * 110.66343 * 357.25819 * 7 2 1 29 29 H 1.08998 * 109.46708 * 181.17869 * 1 2 3 30 30 H 1.08997 * 109.47097 * 301.18022 * 1 2 3 31 31 H 1.08996 * 109.46982 * 61.17785 * 1 2 3 32 32 H 1.09002 * 110.60874 * 78.79426 * 5 4 2 33 33 H 1.09001 * 110.60097 * 201.60319 * 5 4 2 34 34 H 1.09007 * 110.93142 * 278.44330 * 6 5 4 35 35 H 1.08996 * 110.93266 * 154.78002 * 6 5 4 36 36 H 1.09002 * 109.62354 * 66.65891 * 8 7 2 37 37 H 1.09003 * 109.51928 * 306.24724 * 8 7 2 38 38 H 1.07999 * 119.94299 * 359.97438 * 13 12 10 39 39 H 1.07997 * 120.04488 * 180.27968 * 14 13 12 40 40 H 0.96999 * 120.00167 * 180.02562 * 19 18 16 41 41 H 1.07990 * 120.05623 * 180.02562 * 24 15 14 42 42 H 1.07999 * 119.94217 * 179.97438 * 25 24 15 43 43 H 1.08999 * 109.63064 * 68.91405 * 26 9 8 44 44 H 1.09008 * 109.62369 * 189.48736 * 26 9 8 45 45 H 1.08997 * 109.51679 * 172.74636 * 27 26 9 46 46 H 1.09008 * 109.50802 * 292.89176 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 8 2.0201 -0.7005 1.1576 5 6 3.2369 -1.3702 0.7619 6 6 2.9188 -1.8899 -0.6644 7 6 2.0530 -0.7475 -1.2354 8 6 2.9133 0.1738 -2.0892 9 7 3.2633 -0.5303 -3.3345 10 6 4.5382 -0.5830 -3.7685 11 8 5.4343 -0.1371 -3.0783 12 6 4.8466 -1.1822 -5.0822 13 6 3.8811 -1.1756 -6.0962 14 6 4.1614 -1.7272 -7.3109 15 6 5.4249 -2.3049 -7.5449 16 6 5.7196 -2.8776 -8.8005 17 1 6.7398 -2.9084 -9.1538 18 6 4.6881 -3.4067 -9.5893 19 7 4.8853 -3.6246 -10.8622 20 14 3.0319 -3.8001 -8.8199 21 1 2.1329 -2.6256 -8.9528 22 1 2.4285 -4.9664 -9.5133 23 1 3.2178 -4.1210 -7.3819 24 6 6.3932 -2.3091 -6.5215 25 6 6.1036 -1.7551 -5.3101 26 6 2.1778 -1.1796 -4.0868 27 6 1.3771 -2.0617 -3.1224 28 8 0.9741 -1.2806 -1.9935 29 1 -0.3633 -1.0274 0.0211 30 1 -0.3633 0.5320 0.8792 31 1 -0.3633 0.4954 -0.9003 32 1 4.0706 -0.6684 0.7374 33 1 3.4546 -2.1994 1.4352 34 1 2.3552 -2.8221 -0.6226 35 1 3.8320 -2.0145 -1.2462 36 1 3.8222 0.4332 -1.5463 37 1 2.3544 1.0797 -2.3243 38 1 2.9127 -0.7329 -5.9156 39 1 3.4176 -1.7176 -8.0938 40 1 4.1716 -3.9902 -11.4080 41 1 7.3631 -2.7504 -6.6965 42 1 6.8451 -1.7582 -4.5248 43 1 1.5247 -0.4200 -4.5164 44 1 2.6002 -1.7951 -4.8811 45 1 0.4942 -2.4490 -3.6310 46 1 1.9986 -2.8922 -2.7873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279520196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:45 Heat of formation + Delta-G solvation = -97.270856 kcal Electronic energy + Delta-G solvation = -29505.897291 eV Core-core repulsion = 25553.388877 eV Total energy + Delta-G solvation = -3952.508414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20925 -40.71936 -39.15668 -38.60291 -36.02797 -35.62881 -33.76927 -32.68422 -32.35572 -31.79971 -30.13524 -28.89060 -27.25733 -25.52387 -24.77380 -23.72727 -23.15775 -22.69264 -21.22003 -20.30230 -19.49439 -18.44375 -17.89505 -17.69754 -17.55419 -17.08775 -16.62603 -16.25683 -16.13377 -15.87177 -15.61535 -15.42700 -15.27330 -15.02130 -14.63309 -14.37741 -14.29029 -14.09998 -13.83206 -13.69464 -13.43654 -13.16279 -13.00056 -12.89913 -12.70539 -12.57612 -12.44083 -12.24554 -12.12275 -11.97029 -11.91951 -11.71012 -11.43474 -11.14356 -11.01957 -10.76504 -10.68903 -9.73731 -9.67008 -9.48137 -9.04429 -6.64919 0.26663 0.84326 1.25569 1.39497 1.51426 1.81928 1.91297 2.09528 2.48093 2.60321 2.75793 3.36234 3.41855 3.47000 3.69718 3.76240 3.87930 4.01507 4.04794 4.15742 4.18441 4.23734 4.28425 4.34273 4.42123 4.46277 4.54153 4.62941 4.64372 4.70971 4.77207 4.80898 4.83896 4.88706 4.92368 4.95525 5.06525 5.14042 5.33893 5.39100 5.49469 5.55360 5.72611 5.79588 5.80286 6.06493 6.08860 6.22442 6.34254 6.58877 6.66031 7.20422 8.01383 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.003366 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.647576 B = 8316.738412 C = 9098.280929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.091 0.909 4 O -0.383 6.383 5 C 0.050 3.950 6 C -0.175 4.175 7 C 0.083 3.917 8 C 0.096 3.904 9 N -0.612 5.612 10 C 0.578 3.422 11 O -0.593 6.593 12 C -0.282 4.282 13 C -0.039 4.039 14 C -0.261 4.261 15 C 0.096 3.904 16 C -0.461 4.461 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.824 5.824 20 Si 0.971 3.029 21 H -0.243 1.243 22 H -0.278 1.278 23 H -0.245 1.245 24 C -0.233 4.233 25 C -0.024 4.024 26 C 0.047 3.953 27 C 0.045 3.955 28 O -0.358 6.358 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.302 0.698 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.137 0.863 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 2.998 15.960 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.028 3.972 3 H 0.109 0.891 4 O -0.303 6.303 5 C -0.026 4.026 6 C -0.213 4.213 7 C 0.042 3.958 8 C -0.026 4.026 9 N -0.345 5.345 10 C 0.372 3.628 11 O -0.476 6.476 12 C -0.286 4.286 13 C -0.057 4.057 14 C -0.280 4.280 15 C 0.092 3.908 16 C -0.488 4.488 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.448 5.448 20 Si 0.792 3.208 21 H -0.168 1.168 22 H -0.204 1.204 23 H -0.168 1.168 24 C -0.253 4.253 25 C -0.043 4.043 26 C -0.074 4.074 27 C -0.032 4.032 28 O -0.276 6.276 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.132 0.868 45 H 0.155 0.845 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.743 3.174 16.270 20.909 hybrid contribution 0.741 -0.417 -0.826 1.185 sum -12.002 2.758 15.444 19.753 Atomic orbital electron populations 1.21595 0.91401 1.03011 1.02748 1.22719 0.97304 0.95096 0.82041 0.89130 1.88934 1.40421 1.67849 1.33105 1.23561 0.87367 0.97125 0.94579 1.23604 1.00511 0.99538 0.97662 1.22575 0.87479 0.93615 0.92160 1.22082 0.99946 0.95184 0.85428 1.47938 1.06816 1.54932 1.24766 1.18442 0.81545 0.77145 0.85629 1.90646 1.46668 1.51085 1.59248 1.19127 0.97567 1.17146 0.94806 1.21166 0.97800 0.95099 0.91662 1.20893 0.98840 1.09618 0.98642 1.17997 0.92411 0.88599 0.91765 1.19747 0.96038 1.33265 0.99734 0.91989 1.27137 1.04350 0.91727 0.94108 1.69612 1.37409 1.30645 1.07115 0.85442 0.76187 0.78644 0.80481 1.16831 1.20441 1.16829 1.20823 1.00850 1.09895 0.93700 1.20521 0.94546 0.93183 0.96039 1.23351 0.89212 0.98462 0.96405 1.23223 1.00997 0.92620 0.86368 1.87884 1.30121 1.68850 1.40746 0.92317 0.91426 0.90052 0.91621 0.87111 0.89400 0.91347 0.89407 0.89302 0.83397 0.86860 0.88730 0.87590 0.87357 0.88455 0.86819 0.84523 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.62 71.98 0.62 -1.56 16 2 C 0.09 1.67 3.73 30.79 0.11 1.78 16 3 H 0.09 1.55 7.68 -2.39 -0.02 1.53 16 4 O -0.38 -8.51 11.20 -148.98 -1.67 -10.18 16 5 C 0.05 0.99 7.73 72.70 0.56 1.56 16 6 C -0.18 -3.87 5.14 31.75 0.16 -3.71 16 7 C 0.08 1.76 0.96 -10.41 -0.01 1.75 16 8 C 0.10 2.32 4.95 85.98 0.43 2.75 16 9 N -0.61 -17.28 2.70 -822.65 -2.22 -19.50 16 10 C 0.58 21.29 7.48 86.73 0.65 21.94 16 11 O -0.59 -25.24 16.11 -3.98 -0.06 -25.31 16 12 C -0.28 -11.13 5.54 -19.93 -0.11 -11.24 16 13 C -0.04 -1.43 7.38 22.25 0.16 -1.27 16 14 C -0.26 -10.95 7.11 22.47 0.16 -10.79 16 15 C 0.10 4.53 5.17 -21.28 -0.11 4.42 16 16 C -0.46 -23.82 9.58 23.46 0.22 -23.60 16 17 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 18 C 0.05 2.20 5.43 85.35 0.46 2.66 16 19 N -0.82 -41.08 13.92 21.87 0.30 -40.78 16 20 Si 0.97 36.97 24.45 68.60 1.68 38.64 16 21 H -0.24 -8.38 6.54 99.48 0.65 -7.72 16 22 H -0.28 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.25 -9.36 6.90 99.48 0.69 -8.67 16 24 C -0.23 -10.54 9.73 22.47 0.22 -10.33 16 25 C -0.02 -1.00 9.52 22.25 0.21 -0.79 16 26 C 0.05 1.07 4.83 86.34 0.42 1.49 16 27 C 0.04 0.86 6.74 72.07 0.49 1.34 16 28 O -0.36 -7.33 8.39 -148.98 -1.25 -8.58 16 29 H 0.06 1.10 7.82 -2.39 -0.02 1.08 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.23 7.94 -2.39 -0.02 1.21 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.88 7.70 -2.38 -0.02 1.86 16 35 H 0.07 1.80 7.61 -2.39 -0.02 1.78 16 36 H 0.09 2.39 7.04 -2.39 -0.02 2.37 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.15 4.29 5.10 -2.91 -0.01 4.27 16 39 H 0.11 4.56 4.31 -2.91 -0.01 4.54 16 40 H 0.30 13.28 8.29 -92.71 -0.77 12.51 16 41 H 0.11 4.63 8.06 -2.92 -0.02 4.61 16 42 H 0.11 4.41 7.86 -2.91 -0.02 4.39 16 43 H 0.10 1.82 7.92 -2.39 -0.02 1.80 16 44 H 0.11 2.91 4.23 -2.38 -0.01 2.90 16 45 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 1.09 6.97 -2.38 -0.02 1.07 16 Total: -1.00 -60.20 354.22 2.36 -57.84 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.93 Total: 31.45 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 4.65 Total: -23.59 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -1.91 Total: -60.28 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -2.98 Total: -44.06 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 1.68 Total: 38.64 kcal Total: -60.20 2.36 -57.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.431 kcal (2) G-P(sol) polarization free energy of solvation -60.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds