Wall clock time and date at job start Tue Mar 31 2020 17:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.34845 * 2 1 4 4 O 1.44551 * 110.48735 * 237.63789 * 2 1 3 5 5 C 1.44474 * 105.37001 * 201.17231 * 4 2 1 6 6 C 1.54603 * 104.82291 * 40.15305 * 5 4 2 7 7 C 1.53927 * 110.39279 * 122.29927 * 2 1 3 8 8 C 1.52641 * 110.20600 * 24.12277 * 7 2 1 9 9 N 1.47291 * 108.38807 * 186.68180 * 8 7 2 10 10 C 1.34773 * 121.04645 * 229.52205 * 9 8 7 11 11 O 1.21597 * 120.00105 * 356.58198 * 10 9 8 12 12 C 1.47637 * 120.00040 * 176.58354 * 10 9 8 13 13 C 1.40009 * 119.89598 * 33.34113 * 12 10 9 14 14 C 1.36317 * 120.11001 * 179.71908 * 13 12 10 15 15 C 1.40893 * 119.88800 * 0.57551 * 14 13 12 16 16 C 1.41114 * 120.10196 * 179.67429 * 15 14 13 17 17 H 1.07999 * 119.99755 * 157.41479 * 16 15 14 18 18 C 1.40223 * 119.99894 * 337.41310 * 16 15 14 19 19 N 1.30650 * 120.00233 * 339.97871 * 18 16 15 20 20 Si 1.86803 * 119.99652 * 159.98035 * 18 16 15 21 21 H 1.48507 * 109.46912 * 94.71686 * 20 18 16 22 22 H 1.48503 * 109.46978 * 214.71241 * 20 18 16 23 23 H 1.48497 * 109.47360 * 334.71864 * 20 18 16 24 24 C 1.40888 * 119.79304 * 359.70335 * 15 14 13 25 25 C 1.36310 * 119.89332 * 359.97438 * 24 15 14 26 26 C 1.47156 * 117.90338 * 49.54553 * 9 8 7 27 27 C 1.53286 * 108.52936 * 308.96408 * 26 9 8 28 28 O 1.42219 * 110.47522 * 261.29484 * 7 2 1 29 29 H 1.09006 * 109.47294 * 297.70063 * 1 2 3 30 30 H 1.08998 * 109.47579 * 57.69592 * 1 2 3 31 31 H 1.08996 * 109.47280 * 177.70649 * 1 2 3 32 32 H 1.09009 * 110.36613 * 281.31767 * 5 4 2 33 33 H 1.08998 * 110.37119 * 158.99470 * 5 4 2 34 34 H 1.08996 * 110.54498 * 94.69300 * 6 5 4 35 35 H 1.08999 * 110.54561 * 217.50548 * 6 5 4 36 36 H 1.08996 * 109.68104 * 306.40502 * 8 7 2 37 37 H 1.08999 * 109.68443 * 66.95970 * 8 7 2 38 38 H 1.08000 * 119.94606 * 0.02562 * 13 12 10 39 39 H 1.08003 * 120.05744 * 180.29876 * 14 13 12 40 40 H 0.97002 * 119.99690 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.05124 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.95124 * 180.02562 * 25 24 15 43 43 H 1.09000 * 109.62587 * 189.24824 * 26 9 8 44 44 H 1.08996 * 109.78213 * 68.76966 * 26 9 8 45 45 H 1.08995 * 109.51345 * 292.89817 * 27 26 9 46 46 H 1.08998 * 109.55190 * 172.76832 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 8 2.0359 -0.7248 -1.1438 5 6 3.3868 -1.0984 -0.7934 6 6 3.3095 -1.5122 0.6942 7 6 2.0663 -0.7709 1.2195 8 6 1.0246 -1.7733 1.7095 9 7 1.5094 -2.3707 2.9655 10 6 1.5148 -3.7067 3.1431 11 8 1.0580 -4.4360 2.2841 12 6 2.0754 -4.2846 4.3806 13 6 1.9576 -3.5903 5.5907 14 6 2.4685 -4.1225 6.7370 15 6 3.1267 -5.3677 6.7004 16 6 3.6634 -5.9196 7.8831 17 1 3.8329 -6.9839 7.9538 18 6 3.9766 -5.0862 8.9664 19 7 4.1507 -3.8054 8.7763 20 14 4.1449 -5.8074 10.6814 21 1 5.5729 -6.1120 10.9523 22 1 3.6495 -4.8274 11.6812 23 1 3.3462 -7.0558 10.7740 24 6 3.2479 -6.0599 5.4792 25 6 2.7280 -5.5227 4.3394 26 6 1.9870 -1.4628 4.0206 27 6 3.0064 -0.4964 3.4069 28 8 2.4287 0.1306 2.2580 29 1 -0.3634 0.4777 0.9099 30 1 -0.3634 0.5492 -0.8686 31 1 -0.3633 -1.0268 -0.0411 32 1 4.0593 -0.2494 -0.9166 33 1 3.7187 -1.9381 -1.4041 34 1 3.1787 -2.5905 0.7850 35 1 4.2025 -1.1877 1.2284 36 1 0.0785 -1.2621 1.8873 37 1 0.8858 -2.5538 0.9614 38 1 1.4567 -2.6339 5.6170 39 1 2.3729 -3.5885 7.6709 40 1 4.3670 -3.2289 9.5258 41 1 3.7520 -7.0145 5.4463 42 1 2.8200 -6.0526 3.4029 43 1 2.4615 -2.0407 4.8136 44 1 1.1485 -0.8993 4.4298 45 1 3.8985 -1.0482 3.1106 46 1 3.2754 0.2640 4.1401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279520197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:50 Heat of formation + Delta-G solvation = -78.349246 kcal Electronic energy + Delta-G solvation = -29404.962979 eV Core-core repulsion = 25453.275067 eV Total energy + Delta-G solvation = -3951.687912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03659 -39.17278 -37.64440 -37.07612 -34.52723 -33.96758 -32.93199 -31.56736 -30.35330 -29.64494 -28.98088 -27.13203 -25.69311 -24.94463 -23.62088 -22.00294 -21.68137 -21.06015 -19.76089 -18.88646 -17.61727 -17.20835 -16.75862 -16.01765 -15.96202 -15.69114 -15.52621 -15.23275 -14.83142 -14.45946 -14.22204 -13.89952 -13.88950 -13.43066 -13.12037 -12.92661 -12.65196 -12.50082 -12.48561 -12.32582 -11.98855 -11.96037 -11.63065 -11.45221 -11.29281 -11.26226 -11.04964 -11.04424 -10.94756 -10.70106 -10.46967 -10.14843 -10.02473 -9.89016 -9.59579 -9.31493 -8.97227 -8.22614 -7.74455 -7.62817 -7.11044 -4.65297 2.21234 2.85772 2.90480 2.91999 2.97522 3.25150 3.50126 3.66016 3.70898 3.74437 4.36893 4.41282 4.56932 4.67297 4.95399 4.97796 5.05247 5.14719 5.18661 5.30316 5.38736 5.42424 5.43469 5.55704 5.63669 5.65744 5.73301 5.77640 5.86517 5.93626 5.96228 5.98143 6.02488 6.08407 6.20868 6.55170 6.69432 6.74836 6.78837 6.97075 7.05762 7.15147 7.35679 7.53375 7.72231 7.78516 7.95953 8.01626 8.32617 8.57164 8.68316 8.89033 9.80291 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.002968 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.965276 B = 9430.514942 C = 9855.406828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.090 3.910 3 H 0.082 0.918 4 O -0.366 6.366 5 C 0.050 3.950 6 C -0.179 4.179 7 C 0.079 3.921 8 C 0.097 3.903 9 N -0.619 5.619 10 C 0.578 3.422 11 O -0.567 6.567 12 C -0.282 4.282 13 C -0.082 4.082 14 C -0.178 4.178 15 C 0.126 3.874 16 C -0.441 4.441 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.769 5.769 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.237 4.237 25 C -0.025 4.025 26 C 0.045 3.955 27 C 0.045 3.955 28 O -0.368 6.368 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 9.695 -7.952 12.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.100 0.900 4 O -0.286 6.286 5 C -0.027 4.027 6 C -0.217 4.217 7 C 0.038 3.962 8 C -0.026 4.026 9 N -0.354 5.354 10 C 0.374 3.626 11 O -0.448 6.448 12 C -0.287 4.287 13 C -0.101 4.101 14 C -0.197 4.197 15 C 0.123 3.877 16 C -0.469 4.469 17 H 0.103 0.897 18 C -0.146 4.146 19 N -0.392 5.392 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.256 4.256 25 C -0.044 4.044 26 C -0.078 4.078 27 C -0.032 4.032 28 O -0.287 6.287 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.157 0.843 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.303 9.669 -8.493 12.935 hybrid contribution 0.453 -0.331 1.126 1.258 sum -0.850 9.339 -7.367 11.925 Atomic orbital electron populations 1.21921 0.92532 1.03503 1.02772 1.22689 0.95540 0.95578 0.83006 0.90032 1.89189 1.27706 1.74516 1.37162 1.23369 0.84580 0.99927 0.94828 1.23484 0.98971 1.02458 0.96786 1.22692 0.94286 0.90326 0.88856 1.22157 0.95954 0.96353 0.88108 1.48040 1.65632 1.06067 1.15641 1.18740 0.76788 0.80062 0.87042 1.90652 1.48334 1.59358 1.46423 1.18788 1.17816 1.00037 0.92019 1.20830 0.99088 0.97318 0.92828 1.21023 1.02794 0.98687 0.97212 1.17765 0.87155 0.91117 0.91693 1.19847 1.34529 0.95710 0.96786 0.89723 1.26093 0.92156 0.94491 1.01812 1.69738 1.29827 1.05482 1.34176 0.86236 0.79647 0.80413 0.80266 1.19218 1.19673 1.18050 1.20676 1.10002 1.02379 0.92581 1.20251 0.94296 0.92714 0.97131 1.23337 0.98431 0.93152 0.92856 1.23146 0.95661 0.96944 0.87452 1.87788 1.81357 1.33002 1.26564 0.90538 0.91503 0.91083 0.92029 0.88802 0.89575 0.89562 0.90874 0.88148 0.87474 0.86032 0.90196 0.88401 0.88615 0.84303 0.91265 0.92235 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.30 37.16 0.31 -1.23 16 2 C 0.09 1.07 3.58 -26.25 -0.09 0.98 16 3 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 4 O -0.37 -4.78 11.35 -35.23 -0.40 -5.18 16 5 C 0.05 0.56 7.65 38.00 0.29 0.85 16 6 C -0.18 -2.34 5.78 -25.38 -0.15 -2.49 16 7 C 0.08 1.06 0.96 -89.81 -0.09 0.97 16 8 C 0.10 1.47 3.90 -3.79 -0.01 1.46 16 9 N -0.62 -10.68 2.91 -173.75 -0.50 -11.18 16 10 C 0.58 12.20 7.44 -12.43 -0.09 12.11 16 11 O -0.57 -13.42 16.27 5.28 0.09 -13.33 16 12 C -0.28 -6.26 5.55 -104.73 -0.58 -6.84 16 13 C -0.08 -1.75 7.37 -39.61 -0.29 -2.04 16 14 C -0.18 -4.17 8.66 -39.27 -0.34 -4.51 16 15 C 0.13 3.10 5.59 -106.80 -0.60 2.50 16 16 C -0.44 -10.65 9.04 -37.75 -0.34 -10.99 16 17 H 0.08 1.96 7.92 -52.49 -0.42 1.55 16 18 C 0.08 1.71 5.11 -17.31 -0.09 1.62 16 19 N -0.77 -17.53 10.95 55.56 0.61 -16.92 16 20 Si 0.91 16.73 29.61 -169.99 -5.03 11.70 16 21 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 24 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 25 C -0.02 -0.57 9.53 -39.61 -0.38 -0.94 16 26 C 0.04 0.67 5.06 -3.54 -0.02 0.65 16 27 C 0.04 0.58 6.70 37.31 0.25 0.83 16 28 O -0.37 -4.97 10.19 -35.23 -0.36 -5.33 16 29 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.31 7.67 -51.93 -0.40 0.91 16 35 H 0.09 1.08 6.62 -51.93 -0.34 0.73 16 36 H 0.07 1.02 6.20 -51.93 -0.32 0.69 16 37 H 0.10 1.69 6.92 -51.93 -0.36 1.33 16 38 H 0.11 1.98 5.29 -52.49 -0.28 1.70 16 39 H 0.12 2.88 6.08 -52.48 -0.32 2.56 16 40 H 0.29 5.86 8.29 -40.82 -0.34 5.52 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.10 2.10 7.97 -52.49 -0.42 1.69 16 43 H 0.14 2.31 3.69 -52.12 -0.19 2.12 16 44 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.06 0.80 6.50 -51.93 -0.34 0.47 16 46 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -27.72 356.95 -9.05 -36.76 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.22 Total: 11.11 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.60 Total: -13.00 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.10 Total: -28.10 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.67 Total: -23.84 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.72 -9.05 -36.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.585 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds