Wall clock time and date at job start Tue Mar 31 2020 17:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.34845 * 2 1 4 4 O 1.44551 * 110.48735 * 237.63789 * 2 1 3 5 5 C 1.44474 * 105.37001 * 201.17231 * 4 2 1 6 6 C 1.54603 * 104.82291 * 40.15305 * 5 4 2 7 7 C 1.53927 * 110.39279 * 122.29927 * 2 1 3 8 8 C 1.52641 * 110.20600 * 24.12277 * 7 2 1 9 9 N 1.47291 * 108.38807 * 186.68180 * 8 7 2 10 10 C 1.34773 * 121.04645 * 229.52205 * 9 8 7 11 11 O 1.21597 * 120.00105 * 356.58198 * 10 9 8 12 12 C 1.47637 * 120.00040 * 176.58354 * 10 9 8 13 13 C 1.40009 * 119.89598 * 33.34113 * 12 10 9 14 14 C 1.36317 * 120.11001 * 179.71908 * 13 12 10 15 15 C 1.40893 * 119.88800 * 0.57551 * 14 13 12 16 16 C 1.41114 * 120.10196 * 179.67429 * 15 14 13 17 17 H 1.07999 * 119.99755 * 157.41479 * 16 15 14 18 18 C 1.40223 * 119.99894 * 337.41310 * 16 15 14 19 19 N 1.30650 * 120.00233 * 339.97871 * 18 16 15 20 20 Si 1.86803 * 119.99652 * 159.98035 * 18 16 15 21 21 H 1.48507 * 109.46912 * 94.71686 * 20 18 16 22 22 H 1.48503 * 109.46978 * 214.71241 * 20 18 16 23 23 H 1.48497 * 109.47360 * 334.71864 * 20 18 16 24 24 C 1.40888 * 119.79304 * 359.70335 * 15 14 13 25 25 C 1.36310 * 119.89332 * 359.97438 * 24 15 14 26 26 C 1.47156 * 117.90338 * 49.54553 * 9 8 7 27 27 C 1.53286 * 108.52936 * 308.96408 * 26 9 8 28 28 O 1.42219 * 110.47522 * 261.29484 * 7 2 1 29 29 H 1.09006 * 109.47294 * 297.70063 * 1 2 3 30 30 H 1.08998 * 109.47579 * 57.69592 * 1 2 3 31 31 H 1.08996 * 109.47280 * 177.70649 * 1 2 3 32 32 H 1.09009 * 110.36613 * 281.31767 * 5 4 2 33 33 H 1.08998 * 110.37119 * 158.99470 * 5 4 2 34 34 H 1.08996 * 110.54498 * 94.69300 * 6 5 4 35 35 H 1.08999 * 110.54561 * 217.50548 * 6 5 4 36 36 H 1.08996 * 109.68104 * 306.40502 * 8 7 2 37 37 H 1.08999 * 109.68443 * 66.95970 * 8 7 2 38 38 H 1.08000 * 119.94606 * 0.02562 * 13 12 10 39 39 H 1.08003 * 120.05744 * 180.29876 * 14 13 12 40 40 H 0.97002 * 119.99690 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.05124 * 179.97438 * 24 15 14 42 42 H 1.07997 * 119.95124 * 180.02562 * 25 24 15 43 43 H 1.09000 * 109.62587 * 189.24824 * 26 9 8 44 44 H 1.08996 * 109.78213 * 68.76966 * 26 9 8 45 45 H 1.08995 * 109.51345 * 292.89817 * 27 26 9 46 46 H 1.08998 * 109.55190 * 172.76832 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 8 2.0359 -0.7248 -1.1438 5 6 3.3868 -1.0984 -0.7934 6 6 3.3095 -1.5122 0.6942 7 6 2.0663 -0.7709 1.2195 8 6 1.0246 -1.7733 1.7095 9 7 1.5094 -2.3707 2.9655 10 6 1.5148 -3.7067 3.1431 11 8 1.0580 -4.4360 2.2841 12 6 2.0754 -4.2846 4.3806 13 6 1.9576 -3.5903 5.5907 14 6 2.4685 -4.1225 6.7370 15 6 3.1267 -5.3677 6.7004 16 6 3.6634 -5.9196 7.8831 17 1 3.8329 -6.9839 7.9538 18 6 3.9766 -5.0862 8.9664 19 7 4.1507 -3.8054 8.7763 20 14 4.1449 -5.8074 10.6814 21 1 5.5729 -6.1120 10.9523 22 1 3.6495 -4.8274 11.6812 23 1 3.3462 -7.0558 10.7740 24 6 3.2479 -6.0599 5.4792 25 6 2.7280 -5.5227 4.3394 26 6 1.9870 -1.4628 4.0206 27 6 3.0064 -0.4964 3.4069 28 8 2.4287 0.1306 2.2580 29 1 -0.3634 0.4777 0.9099 30 1 -0.3634 0.5492 -0.8686 31 1 -0.3633 -1.0268 -0.0411 32 1 4.0593 -0.2494 -0.9166 33 1 3.7187 -1.9381 -1.4041 34 1 3.1787 -2.5905 0.7850 35 1 4.2025 -1.1877 1.2284 36 1 0.0785 -1.2621 1.8873 37 1 0.8858 -2.5538 0.9614 38 1 1.4567 -2.6339 5.6170 39 1 2.3729 -3.5885 7.6709 40 1 4.3670 -3.2289 9.5258 41 1 3.7520 -7.0145 5.4463 42 1 2.8200 -6.0526 3.4029 43 1 2.4615 -2.0407 4.8136 44 1 1.1485 -0.8993 4.4298 45 1 3.8985 -1.0482 3.1106 46 1 3.2754 0.2640 4.1401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279520197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:49 Heat of formation + Delta-G solvation = -94.163769 kcal Electronic energy + Delta-G solvation = -29405.648748 eV Core-core repulsion = 25453.275067 eV Total energy + Delta-G solvation = -3952.373681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20869 -40.63384 -39.00219 -38.60989 -36.00580 -35.62019 -34.01132 -32.56269 -32.00035 -31.41229 -30.16499 -28.59636 -27.06173 -26.13561 -24.82269 -23.41697 -23.04446 -22.62395 -21.12341 -20.20645 -19.36606 -18.39505 -18.18813 -17.49068 -17.11633 -16.92035 -16.72061 -16.47916 -16.16999 -15.88526 -15.61348 -15.25695 -15.06622 -14.87354 -14.57544 -14.42885 -14.15907 -13.88628 -13.63949 -13.45201 -13.39444 -13.21395 -13.03605 -12.84676 -12.75010 -12.56578 -12.39454 -12.30623 -12.12794 -11.97522 -11.80951 -11.69257 -11.31567 -11.17349 -11.03385 -10.85396 -10.60664 -9.65021 -9.51472 -9.38605 -8.80667 -6.47136 0.47950 1.10118 1.38280 1.42809 1.54784 1.86138 2.02166 2.17200 2.44107 2.68857 2.80483 3.33991 3.46509 3.62926 3.68651 3.81341 3.92394 4.01341 4.07716 4.12381 4.25408 4.29144 4.32601 4.38189 4.43842 4.49741 4.56572 4.58273 4.73023 4.76181 4.81561 4.83124 4.90200 4.92984 4.96387 5.02028 5.14415 5.20420 5.27767 5.43908 5.57143 5.62244 5.77734 5.94037 5.97808 6.08826 6.20714 6.39785 6.52807 6.77065 6.87775 7.25334 8.13895 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.002968 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.965276 B = 9430.514942 C = 9855.406828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.092 3.908 3 H 0.096 0.904 4 O -0.382 6.382 5 C 0.051 3.949 6 C -0.180 4.180 7 C 0.081 3.919 8 C 0.097 3.903 9 N -0.612 5.612 10 C 0.576 3.424 11 O -0.601 6.601 12 C -0.292 4.292 13 C -0.068 4.068 14 C -0.195 4.195 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.083 0.917 18 C 0.042 3.958 19 N -0.789 5.789 20 Si 0.983 3.017 21 H -0.261 1.261 22 H -0.260 1.260 23 H -0.261 1.261 24 C -0.252 4.252 25 C -0.035 4.035 26 C 0.041 3.959 27 C 0.048 3.952 28 O -0.364 6.364 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.298 0.702 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 12.019 -7.354 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.034 3.966 3 H 0.113 0.887 4 O -0.302 6.302 5 C -0.025 4.025 6 C -0.218 4.218 7 C 0.040 3.960 8 C -0.025 4.025 9 N -0.345 5.345 10 C 0.370 3.630 11 O -0.485 6.485 12 C -0.296 4.296 13 C -0.086 4.086 14 C -0.215 4.215 15 C 0.098 3.902 16 C -0.499 4.499 17 H 0.101 0.899 18 C -0.178 4.178 19 N -0.412 5.412 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.184 1.184 23 H -0.185 1.185 24 C -0.272 4.272 25 C -0.054 4.054 26 C -0.081 4.081 27 C -0.028 4.028 28 O -0.282 6.282 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.140 0.860 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.302 12.043 -7.909 14.466 hybrid contribution 0.469 -0.993 0.875 1.404 sum -0.832 11.049 -7.034 13.125 Atomic orbital electron populations 1.21945 0.91437 1.03167 1.04117 1.22806 0.96462 0.95660 0.81715 0.88666 1.89180 1.28498 1.74814 1.37689 1.23471 0.84424 1.01106 0.93519 1.23447 0.99229 1.00646 0.98446 1.22699 0.93722 0.90153 0.89436 1.22303 0.97490 0.96174 0.86571 1.48022 1.64409 1.05123 1.16907 1.18594 0.76713 0.81358 0.86290 1.90627 1.50021 1.60627 1.47215 1.19020 1.17510 0.99986 0.93071 1.21059 0.97916 0.97967 0.91644 1.21039 1.03921 0.98775 0.97724 1.18096 0.87888 0.92002 0.92250 1.20095 1.35890 0.96068 0.97898 0.89928 1.26847 0.91267 0.94706 1.04963 1.69738 1.29246 1.06434 1.35828 0.85171 0.79673 0.79495 0.75399 1.18561 1.18435 1.18457 1.20793 1.10791 1.02866 0.92736 1.20382 0.94622 0.93364 0.97020 1.23451 0.99706 0.92932 0.92001 1.23204 0.94486 0.97279 0.87874 1.87806 1.81220 1.32726 1.26492 0.89381 0.89995 0.92255 0.89876 0.88045 0.92451 0.89006 0.89138 0.90256 0.84511 0.86473 0.89019 0.87974 0.88529 0.85984 0.89018 0.92959 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.30 71.98 0.60 -2.14 16 2 C 0.09 1.97 3.58 30.91 0.11 2.08 16 3 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 4 O -0.38 -9.35 11.35 -148.98 -1.69 -11.04 16 5 C 0.05 1.08 7.65 72.53 0.55 1.64 16 6 C -0.18 -4.56 5.78 31.47 0.18 -4.38 16 7 C 0.08 2.02 0.96 -10.27 -0.01 2.01 16 8 C 0.10 2.85 3.90 86.11 0.34 3.19 16 9 N -0.61 -20.68 2.91 -821.89 -2.39 -23.07 16 10 C 0.58 24.60 7.44 86.73 0.65 25.24 16 11 O -0.60 -29.25 16.27 -4.02 -0.07 -29.32 16 12 C -0.29 -13.14 5.55 -19.93 -0.11 -13.25 16 13 C -0.07 -2.87 7.37 22.25 0.16 -2.71 16 14 C -0.20 -9.27 8.66 22.47 0.19 -9.08 16 15 C 0.10 5.09 5.59 -21.27 -0.12 4.98 16 16 C -0.47 -23.27 9.04 23.46 0.21 -23.06 16 17 H 0.08 3.94 7.92 -2.91 -0.02 3.92 16 18 C 0.04 1.89 5.11 85.35 0.44 2.32 16 19 N -0.79 -35.68 10.95 21.87 0.24 -35.44 16 20 Si 0.98 33.65 29.61 68.60 2.03 35.68 16 21 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 22 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 23 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 24 C -0.25 -12.31 9.73 22.47 0.22 -12.09 16 25 C -0.03 -1.64 9.53 22.25 0.21 -1.43 16 26 C 0.04 1.14 5.06 86.35 0.44 1.57 16 27 C 0.05 1.13 6.70 72.08 0.48 1.62 16 28 O -0.36 -8.76 10.19 -148.98 -1.52 -10.28 16 29 H 0.09 1.40 7.70 -2.38 -0.02 1.38 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.23 6.75 -2.39 -0.02 1.21 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.78 7.67 -2.39 -0.02 1.76 16 35 H 0.09 2.19 6.62 -2.39 -0.02 2.18 16 36 H 0.09 2.36 6.20 -2.39 -0.01 2.34 16 37 H 0.08 2.71 6.92 -2.39 -0.02 2.69 16 38 H 0.14 4.88 5.29 -2.91 -0.02 4.86 16 39 H 0.12 5.60 6.08 -2.91 -0.02 5.58 16 40 H 0.30 11.88 8.29 -92.71 -0.77 11.11 16 41 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 42 H 0.10 4.45 7.97 -2.91 -0.02 4.42 16 43 H 0.12 3.90 3.69 -2.57 -0.01 3.89 16 44 H 0.09 2.21 8.12 -2.39 -0.02 2.19 16 45 H 0.05 1.32 6.50 -2.39 -0.02 1.31 16 46 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -60.66 356.95 2.16 -58.50 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: 1.01 Total: 38.44 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.54 Total: -23.49 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -2.15 Total: -58.50 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -3.28 Total: -50.64 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Total: -60.66 2.16 -58.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.660 kcal (2) G-P(sol) polarization free energy of solvation -60.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds