Wall clock time and date at job start Tue Mar 31 2020 17:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.90319 * 2 1 4 4 O 1.43898 * 110.06491 * 238.81708 * 2 1 3 5 5 C 1.44428 * 107.00058 * 266.91288 * 4 2 1 6 6 C 1.55111 * 103.55563 * 320.27170 * 5 4 2 7 7 C 1.53563 * 109.90587 * 121.08695 * 2 1 3 8 8 C 1.52662 * 110.38140 * 235.71707 * 7 2 1 9 9 N 1.47279 * 108.39176 * 173.67862 * 8 7 2 10 10 C 1.34782 * 121.05009 * 130.39472 * 9 8 7 11 11 O 1.21585 * 119.99897 * 354.22502 * 10 9 8 12 12 C 1.47644 * 119.99977 * 174.22098 * 10 9 8 13 13 C 1.40014 * 119.89486 * 328.08983 * 12 10 9 14 14 C 1.36312 * 120.10622 * 179.72291 * 13 12 10 15 15 C 1.40887 * 119.89500 * 0.52794 * 14 13 12 16 16 C 1.41099 * 120.10590 * 179.76505 * 15 14 13 17 17 H 1.08006 * 119.99689 * 205.50045 * 16 15 14 18 18 C 1.40224 * 120.00251 * 25.51127 * 16 15 14 19 19 N 1.30641 * 120.00069 * 16.74029 * 18 16 15 20 20 Si 1.86801 * 119.99945 * 196.75036 * 18 16 15 21 21 H 1.48500 * 109.47236 * 59.99408 * 20 18 16 22 22 H 1.48507 * 109.47130 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47218 * 299.99193 * 20 18 16 24 24 C 1.40890 * 119.78786 * 359.74491 * 15 14 13 25 25 C 1.36320 * 119.89348 * 0.02562 * 24 15 14 26 26 C 1.47163 * 117.90011 * 310.42654 * 9 8 7 27 27 C 1.53272 * 108.52926 * 51.03145 * 26 9 8 28 28 O 1.42229 * 110.65538 * 358.74539 * 7 2 1 29 29 H 1.08997 * 109.47109 * 298.91736 * 1 2 3 30 30 H 1.09003 * 109.46890 * 58.91316 * 1 2 3 31 31 H 1.08997 * 109.47372 * 178.91321 * 1 2 3 32 32 H 1.09001 * 110.60489 * 78.78920 * 5 4 2 33 33 H 1.09001 * 110.60817 * 201.60087 * 5 4 2 34 34 H 1.08996 * 110.92844 * 278.43597 * 6 5 4 35 35 H 1.08998 * 110.93086 * 154.76919 * 6 5 4 36 36 H 1.08996 * 109.68453 * 293.40853 * 8 7 2 37 37 H 1.09002 * 109.67961 * 53.95712 * 8 7 2 38 38 H 1.08002 * 119.94753 * 0.02562 * 13 12 10 39 39 H 1.08004 * 120.05664 * 180.24941 * 14 13 12 40 40 H 0.97002 * 120.00157 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.05408 * 179.97438 * 24 15 14 42 42 H 1.07996 * 119.94502 * 180.02562 * 25 24 15 43 43 H 1.09005 * 109.62674 * 170.74088 * 26 9 8 44 44 H 1.08991 * 109.62808 * 291.12336 * 26 9 8 45 45 H 1.08997 * 109.51712 * 187.26242 * 27 26 9 46 46 H 1.09005 * 109.51257 * 67.11627 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0248 0.0000 4 8 2.0237 -0.6998 -1.1564 5 6 2.2384 -2.0719 -0.7598 6 6 2.8331 -1.9490 0.6675 7 6 2.0528 -0.7455 1.2365 8 6 2.9918 0.1507 2.0401 9 7 3.3451 -0.5470 3.2881 10 6 4.6294 -0.6615 3.6809 11 8 5.5243 -0.2786 2.9524 12 6 4.9493 -1.2518 4.9958 13 6 4.0655 -1.0856 6.0690 14 6 4.3540 -1.6335 7.2834 15 6 5.5489 -2.3585 7.4607 16 6 5.8542 -2.9233 8.7172 17 1 6.8827 -3.1068 8.9911 18 6 4.8224 -3.2466 9.6100 19 7 3.5921 -3.3390 9.1806 20 14 5.2071 -3.5448 11.4135 21 1 5.8179 -2.3239 11.9978 22 1 3.9529 -3.8669 12.1405 23 1 6.1563 -4.6803 11.5360 24 6 6.4378 -2.5181 6.3793 25 6 6.1385 -1.9705 5.1673 26 6 2.2518 -1.1159 4.0923 27 6 1.3701 -1.9738 3.1781 28 8 0.9726 -1.1981 2.0435 29 1 -0.3633 0.4969 0.8995 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3634 -1.0274 -0.0195 32 1 1.2946 -2.6167 -0.7365 33 1 2.9449 -2.5594 -1.4316 34 1 3.9014 -1.7366 0.6272 35 1 2.6382 -2.8498 1.2495 36 1 3.8943 0.3488 1.4621 37 1 2.4914 1.0904 2.2740 38 1 3.1515 -0.5266 5.9332 39 1 3.6697 -1.5083 8.1096 40 1 2.8782 -3.5623 9.7983 41 1 7.3552 -3.0727 6.5106 42 1 6.8191 -2.0927 4.3378 43 1 2.6664 -1.7354 4.8877 44 1 1.6595 -0.3106 4.5266 45 1 0.4851 -2.2981 3.7255 46 1 1.9322 -2.8459 2.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279520198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:54 Heat of formation + Delta-G solvation = -88.687531 kcal Electronic energy + Delta-G solvation = -29302.107921 eV Core-core repulsion = 25349.971707 eV Total energy + Delta-G solvation = -3952.136214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03526 -39.20693 -37.63445 -37.06043 -34.52347 -33.93606 -32.57055 -31.42201 -30.34035 -29.61155 -29.06837 -27.68983 -25.91336 -24.33329 -23.67026 -22.05115 -21.37360 -21.08715 -19.96174 -18.89253 -17.58736 -17.08318 -16.91325 -16.56494 -15.93571 -15.67967 -15.35997 -14.80747 -14.56684 -14.45811 -14.27241 -14.00109 -13.68795 -13.44458 -13.21289 -12.98622 -12.81507 -12.71267 -12.34986 -12.08052 -11.95650 -11.87526 -11.78353 -11.47355 -11.35160 -11.29461 -11.17959 -11.06483 -10.90956 -10.69924 -10.49814 -10.13049 -9.99102 -9.81724 -9.59546 -9.37764 -9.04286 -8.25820 -7.74945 -7.60530 -7.07708 -4.66274 2.19706 2.88883 2.90814 2.92539 2.95046 3.24381 3.51010 3.65560 3.71429 3.72879 4.34309 4.43188 4.52943 4.68729 4.93455 5.01337 5.09029 5.12402 5.17857 5.30466 5.32768 5.43136 5.49221 5.54656 5.60091 5.65136 5.78614 5.81974 5.88103 5.92977 5.94350 6.00833 6.07731 6.18936 6.20644 6.62889 6.69300 6.73992 6.77946 6.96742 7.05395 7.13270 7.36706 7.52049 7.71612 7.78729 7.94693 8.01449 8.33426 8.57506 8.68072 8.86494 9.84048 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002903 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.263448 B = 9643.469889 C =10227.731660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 H 0.103 0.897 4 O -0.370 6.370 5 C 0.051 3.949 6 C -0.178 4.178 7 C 0.079 3.921 8 C 0.099 3.901 9 N -0.620 5.620 10 C 0.579 3.421 11 O -0.567 6.567 12 C -0.282 4.282 13 C -0.074 4.074 14 C -0.175 4.175 15 C 0.128 3.872 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.774 5.774 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.262 1.262 24 C -0.236 4.236 25 C -0.025 4.025 26 C 0.063 3.937 27 C 0.042 3.958 28 O -0.362 6.362 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 1.645 -9.585 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.121 0.879 4 O -0.289 6.289 5 C -0.026 4.026 6 C -0.216 4.216 7 C 0.038 3.962 8 C -0.025 4.025 9 N -0.354 5.354 10 C 0.375 3.625 11 O -0.448 6.448 12 C -0.286 4.286 13 C -0.093 4.093 14 C -0.194 4.194 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.102 0.898 18 C -0.146 4.146 19 N -0.398 5.398 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.256 4.256 25 C -0.044 4.044 26 C -0.060 4.060 27 C -0.035 4.035 28 O -0.280 6.280 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.259 1.911 -10.131 13.210 hybrid contribution 0.182 -0.421 1.238 1.320 sum -8.077 1.491 -8.893 12.106 Atomic orbital electron populations 1.21941 0.94285 1.02987 1.01974 1.22615 0.95220 0.96161 0.82824 0.87950 1.88953 1.85931 1.21197 1.32798 1.23528 0.99853 0.84191 0.94996 1.23672 1.01553 0.99385 0.96959 1.22641 0.87662 0.94280 0.91584 1.21999 0.99385 0.94370 0.86730 1.47992 1.06608 1.57828 1.23022 1.18749 0.80457 0.76693 0.86622 1.90644 1.45922 1.51511 1.56705 1.18801 1.00832 1.16423 0.92591 1.20735 0.96579 0.98488 0.93494 1.20998 1.00197 1.01692 0.96544 1.17771 0.90739 0.87201 0.91811 1.19809 0.94606 1.34044 0.98671 0.89797 1.26069 0.94372 0.92593 1.01563 1.69708 1.01231 1.31288 1.37526 0.86261 0.79075 0.80179 0.80769 1.18496 1.20028 1.18676 1.20714 1.02655 1.09027 0.93172 1.20273 0.93575 0.94123 0.96461 1.22942 0.88958 0.98653 0.95464 1.23179 0.99829 0.93685 0.86809 1.87855 1.30549 1.71112 1.38521 0.90995 0.92400 0.91931 0.92018 0.88880 0.89266 0.89388 0.88078 0.91381 0.88198 0.86104 0.90185 0.88375 0.88559 0.85699 0.91207 0.87483 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.57 37.16 0.32 -1.27 16 2 C 0.09 1.04 3.75 -26.44 -0.10 0.94 16 3 H 0.10 1.08 7.68 -51.93 -0.40 0.69 16 4 O -0.37 -4.72 11.21 -35.23 -0.39 -5.11 16 5 C 0.05 0.57 7.68 38.27 0.29 0.86 16 6 C -0.18 -2.26 6.04 -24.93 -0.15 -2.41 16 7 C 0.08 1.01 0.96 -89.82 -0.09 0.92 16 8 C 0.10 1.43 5.03 -3.79 -0.02 1.41 16 9 N -0.62 -10.38 2.89 -173.75 -0.50 -10.89 16 10 C 0.58 12.01 7.43 -12.42 -0.09 11.91 16 11 O -0.57 -13.18 16.21 5.29 0.09 -13.09 16 12 C -0.28 -6.20 5.41 -104.73 -0.57 -6.76 16 13 C -0.07 -1.57 7.32 -39.61 -0.29 -1.86 16 14 C -0.18 -4.10 8.63 -39.27 -0.34 -4.44 16 15 C 0.13 3.14 5.57 -106.81 -0.59 2.55 16 16 C -0.44 -10.72 9.05 -37.75 -0.34 -11.06 16 17 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 18 C 0.08 1.69 5.15 -17.31 -0.09 1.60 16 19 N -0.77 -17.76 10.94 55.56 0.61 -17.15 16 20 Si 0.91 16.85 29.59 -169.99 -5.03 11.82 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 H -0.28 -4.94 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 24 C -0.24 -5.53 9.73 -39.27 -0.38 -5.91 16 25 C -0.03 -0.57 9.53 -39.61 -0.38 -0.95 16 26 C 0.06 0.91 4.87 -3.54 -0.02 0.90 16 27 C 0.04 0.52 6.73 37.30 0.25 0.77 16 28 O -0.36 -4.58 8.42 -35.23 -0.30 -4.88 16 29 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.28 7.69 -51.93 -0.40 0.88 16 35 H 0.09 1.11 5.96 -51.93 -0.31 0.80 16 36 H 0.10 1.61 6.86 -51.93 -0.36 1.25 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.86 5.61 -52.49 -0.29 1.57 16 39 H 0.12 2.88 6.18 -52.48 -0.32 2.55 16 40 H 0.29 5.94 8.29 -40.82 -0.34 5.61 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.10 2.10 7.93 -52.49 -0.42 1.69 16 43 H 0.13 2.06 4.50 -51.93 -0.23 1.82 16 44 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 45 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.76 6.12 -51.93 -0.32 0.44 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -27.35 359.23 -9.07 -36.42 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.37 Total: 10.26 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.58 Total: -12.79 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.11 Total: -28.03 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.61 Total: -23.08 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.35 -9.07 -36.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.269 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds