Wall clock time and date at job start Tue Mar 31 2020 17:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.90319 * 2 1 4 4 O 1.43898 * 110.06491 * 238.81708 * 2 1 3 5 5 C 1.44428 * 107.00058 * 266.91288 * 4 2 1 6 6 C 1.55111 * 103.55563 * 320.27170 * 5 4 2 7 7 C 1.53563 * 109.90587 * 121.08695 * 2 1 3 8 8 C 1.52662 * 110.38140 * 235.71707 * 7 2 1 9 9 N 1.47279 * 108.39176 * 173.67862 * 8 7 2 10 10 C 1.34782 * 121.05009 * 130.39472 * 9 8 7 11 11 O 1.21585 * 119.99897 * 354.22502 * 10 9 8 12 12 C 1.47644 * 119.99977 * 174.22098 * 10 9 8 13 13 C 1.40014 * 119.89486 * 328.08983 * 12 10 9 14 14 C 1.36312 * 120.10622 * 179.72291 * 13 12 10 15 15 C 1.40887 * 119.89500 * 0.52794 * 14 13 12 16 16 C 1.41099 * 120.10590 * 179.76505 * 15 14 13 17 17 H 1.08006 * 119.99689 * 205.50045 * 16 15 14 18 18 C 1.40224 * 120.00251 * 25.51127 * 16 15 14 19 19 N 1.30641 * 120.00069 * 16.74029 * 18 16 15 20 20 Si 1.86801 * 119.99945 * 196.75036 * 18 16 15 21 21 H 1.48500 * 109.47236 * 59.99408 * 20 18 16 22 22 H 1.48507 * 109.47130 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47218 * 299.99193 * 20 18 16 24 24 C 1.40890 * 119.78786 * 359.74491 * 15 14 13 25 25 C 1.36320 * 119.89348 * 0.02562 * 24 15 14 26 26 C 1.47163 * 117.90011 * 310.42654 * 9 8 7 27 27 C 1.53272 * 108.52926 * 51.03145 * 26 9 8 28 28 O 1.42229 * 110.65538 * 358.74539 * 7 2 1 29 29 H 1.08997 * 109.47109 * 298.91736 * 1 2 3 30 30 H 1.09003 * 109.46890 * 58.91316 * 1 2 3 31 31 H 1.08997 * 109.47372 * 178.91321 * 1 2 3 32 32 H 1.09001 * 110.60489 * 78.78920 * 5 4 2 33 33 H 1.09001 * 110.60817 * 201.60087 * 5 4 2 34 34 H 1.08996 * 110.92844 * 278.43597 * 6 5 4 35 35 H 1.08998 * 110.93086 * 154.76919 * 6 5 4 36 36 H 1.08996 * 109.68453 * 293.40853 * 8 7 2 37 37 H 1.09002 * 109.67961 * 53.95712 * 8 7 2 38 38 H 1.08002 * 119.94753 * 0.02562 * 13 12 10 39 39 H 1.08004 * 120.05664 * 180.24941 * 14 13 12 40 40 H 0.97002 * 120.00157 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.05408 * 179.97438 * 24 15 14 42 42 H 1.07996 * 119.94502 * 180.02562 * 25 24 15 43 43 H 1.09005 * 109.62674 * 170.74088 * 26 9 8 44 44 H 1.08991 * 109.62808 * 291.12336 * 26 9 8 45 45 H 1.08997 * 109.51712 * 187.26242 * 27 26 9 46 46 H 1.09005 * 109.51257 * 67.11627 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0248 0.0000 4 8 2.0237 -0.6998 -1.1564 5 6 2.2384 -2.0719 -0.7598 6 6 2.8331 -1.9490 0.6675 7 6 2.0528 -0.7455 1.2365 8 6 2.9918 0.1507 2.0401 9 7 3.3451 -0.5470 3.2881 10 6 4.6294 -0.6615 3.6809 11 8 5.5243 -0.2786 2.9524 12 6 4.9493 -1.2518 4.9958 13 6 4.0655 -1.0856 6.0690 14 6 4.3540 -1.6335 7.2834 15 6 5.5489 -2.3585 7.4607 16 6 5.8542 -2.9233 8.7172 17 1 6.8827 -3.1068 8.9911 18 6 4.8224 -3.2466 9.6100 19 7 3.5921 -3.3390 9.1806 20 14 5.2071 -3.5448 11.4135 21 1 5.8179 -2.3239 11.9978 22 1 3.9529 -3.8669 12.1405 23 1 6.1563 -4.6803 11.5360 24 6 6.4378 -2.5181 6.3793 25 6 6.1385 -1.9705 5.1673 26 6 2.2518 -1.1159 4.0923 27 6 1.3701 -1.9738 3.1781 28 8 0.9726 -1.1981 2.0435 29 1 -0.3633 0.4969 0.8995 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3634 -1.0274 -0.0195 32 1 1.2946 -2.6167 -0.7365 33 1 2.9449 -2.5594 -1.4316 34 1 3.9014 -1.7366 0.6272 35 1 2.6382 -2.8498 1.2495 36 1 3.8943 0.3488 1.4621 37 1 2.4914 1.0904 2.2740 38 1 3.1515 -0.5266 5.9332 39 1 3.6697 -1.5083 8.1096 40 1 2.8782 -3.5623 9.7983 41 1 7.3552 -3.0727 6.5106 42 1 6.8191 -2.0927 4.3378 43 1 2.6664 -1.7354 4.8877 44 1 1.6595 -0.3106 4.5266 45 1 0.4851 -2.2981 3.7255 46 1 1.9322 -2.8459 2.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279520198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:53 Heat of formation + Delta-G solvation = -103.637271 kcal Electronic energy + Delta-G solvation = -29302.756190 eV Core-core repulsion = 25349.971707 eV Total energy + Delta-G solvation = -3952.784483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.16691 -40.65132 -39.01441 -38.54142 -35.95585 -35.59938 -33.66290 -32.38007 -31.95246 -31.38373 -30.17765 -29.00150 -27.44797 -25.50164 -24.85902 -23.44665 -22.82797 -22.54503 -21.17105 -20.28731 -19.34828 -18.35548 -18.06118 -17.66440 -17.46717 -16.87482 -16.81770 -16.17312 -15.93477 -15.66607 -15.45312 -15.13065 -15.02814 -14.97605 -14.50493 -14.44140 -14.14008 -13.97363 -13.76780 -13.56933 -13.37998 -13.03115 -12.95345 -12.82243 -12.77528 -12.61297 -12.49754 -12.32698 -12.10848 -11.91399 -11.79316 -11.68121 -11.33656 -11.12016 -11.06220 -10.78482 -10.63003 -9.64388 -9.52260 -9.36232 -8.77558 -6.48105 0.46829 1.11054 1.39413 1.44292 1.51687 1.87293 2.02425 2.17458 2.49099 2.71366 2.80938 3.31767 3.48199 3.63417 3.73017 3.81850 3.92921 3.99913 4.13828 4.14881 4.27939 4.32767 4.33881 4.38985 4.44153 4.49773 4.55582 4.64123 4.72538 4.77050 4.83410 4.92419 4.94432 4.98897 5.02595 5.07178 5.13978 5.27594 5.38675 5.43678 5.58594 5.71386 5.77450 5.94073 5.98320 6.11061 6.21584 6.39298 6.53713 6.77747 6.87691 7.25263 8.16966 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002903 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.263448 B = 9643.469889 C =10227.731660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 H 0.112 0.888 4 O -0.384 6.384 5 C 0.054 3.946 6 C -0.179 4.179 7 C 0.084 3.916 8 C 0.096 3.904 9 N -0.612 5.612 10 C 0.577 3.423 11 O -0.599 6.599 12 C -0.289 4.289 13 C -0.059 4.059 14 C -0.192 4.192 15 C 0.103 3.897 16 C -0.476 4.476 17 H 0.083 0.917 18 C 0.041 3.959 19 N -0.795 5.795 20 Si 0.984 3.016 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.260 1.260 24 C -0.251 4.251 25 C -0.035 4.035 26 C 0.059 3.941 27 C 0.046 3.954 28 O -0.356 6.356 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.136 0.864 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 1.792 -9.488 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.130 0.870 4 O -0.303 6.303 5 C -0.022 4.022 6 C -0.217 4.217 7 C 0.043 3.957 8 C -0.027 4.027 9 N -0.344 5.344 10 C 0.372 3.628 11 O -0.483 6.483 12 C -0.293 4.293 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.100 3.900 16 C -0.503 4.503 17 H 0.101 0.899 18 C -0.178 4.178 19 N -0.419 5.419 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.184 1.184 24 C -0.270 4.270 25 C -0.054 4.054 26 C -0.063 4.063 27 C -0.031 4.031 28 O -0.274 6.274 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.108 0.892 45 H 0.154 0.846 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.472 2.057 -10.056 14.663 hybrid contribution 0.815 -0.456 1.119 1.458 sum -9.656 1.600 -8.937 13.254 Atomic orbital electron populations 1.21892 0.92950 1.02926 1.02736 1.22725 0.96197 0.96273 0.81756 0.87048 1.88940 1.86157 1.21923 1.33325 1.23603 1.00680 0.83854 0.94060 1.23630 1.00328 0.99422 0.98337 1.22597 0.87384 0.93982 0.91766 1.22175 0.99340 0.95439 0.85696 1.47958 1.05803 1.56934 1.23753 1.18570 0.81604 0.76633 0.86008 1.90623 1.47296 1.53083 1.57297 1.19043 1.00648 1.15961 0.93693 1.20915 0.97059 0.97498 0.92316 1.21002 1.00178 1.02743 0.97227 1.18098 0.91563 0.87937 0.92446 1.20059 0.95251 1.35455 0.99544 0.89937 1.26825 0.93900 0.91815 1.05309 1.69721 1.02013 1.30932 1.39206 0.85211 0.79222 0.79848 0.75330 1.18540 1.18664 1.18438 1.20836 1.03059 1.09746 0.93403 1.20408 0.94217 0.94430 0.96326 1.23067 0.88498 0.99297 0.95438 1.23226 1.00506 0.92825 0.86493 1.87879 1.30165 1.70999 1.38379 0.90523 0.91334 0.92374 0.90719 0.87623 0.91501 0.89434 0.89733 0.89513 0.85451 0.86706 0.89152 0.87923 0.88360 0.87566 0.89244 0.84606 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.57 71.98 0.62 -2.00 16 2 C 0.09 1.86 3.75 30.78 0.12 1.98 16 3 H 0.11 2.12 7.68 -2.39 -0.02 2.10 16 4 O -0.38 -9.11 11.21 -148.98 -1.67 -10.78 16 5 C 0.05 1.12 7.68 72.71 0.56 1.68 16 6 C -0.18 -4.40 6.04 31.76 0.19 -4.21 16 7 C 0.08 1.98 0.96 -10.28 -0.01 1.97 16 8 C 0.10 2.68 5.03 86.12 0.43 3.11 16 9 N -0.61 -19.91 2.89 -821.88 -2.38 -22.29 16 10 C 0.58 24.03 7.43 86.73 0.64 24.67 16 11 O -0.60 -28.38 16.21 -3.98 -0.06 -28.44 16 12 C -0.29 -12.85 5.41 -19.93 -0.11 -12.95 16 13 C -0.06 -2.51 7.32 22.25 0.16 -2.35 16 14 C -0.19 -9.14 8.63 22.47 0.19 -8.94 16 15 C 0.10 5.18 5.57 -21.28 -0.12 5.06 16 16 C -0.48 -23.48 9.05 23.46 0.21 -23.27 16 17 H 0.08 3.93 7.90 -2.91 -0.02 3.91 16 18 C 0.04 1.83 5.15 85.35 0.44 2.27 16 19 N -0.80 -36.31 10.94 21.87 0.24 -36.07 16 20 Si 0.98 33.96 29.59 68.60 2.03 35.99 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 H -0.26 -8.44 7.11 99.48 0.71 -7.74 16 23 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 24 C -0.25 -12.16 9.73 22.47 0.22 -11.94 16 25 C -0.03 -1.62 9.53 22.25 0.21 -1.41 16 26 C 0.06 1.61 4.87 86.34 0.42 2.03 16 27 C 0.05 1.03 6.73 72.07 0.49 1.52 16 28 O -0.36 -8.02 8.42 -148.98 -1.25 -9.27 16 29 H 0.08 1.30 7.85 -2.39 -0.02 1.28 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.09 7.91 -2.39 -0.02 1.07 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.94 7.69 -2.39 -0.02 1.92 16 35 H 0.09 2.13 5.96 -2.39 -0.01 2.12 16 36 H 0.08 2.68 6.86 -2.39 -0.02 2.66 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.13 4.58 5.61 -2.91 -0.02 4.56 16 39 H 0.12 5.53 6.18 -2.91 -0.02 5.52 16 40 H 0.30 12.06 8.29 -92.71 -0.77 11.29 16 41 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.10 4.46 7.93 -2.91 -0.02 4.43 16 43 H 0.11 3.36 4.50 -2.38 -0.01 3.35 16 44 H 0.09 2.13 7.93 -2.39 -0.02 2.11 16 45 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.05 1.29 6.12 -2.38 -0.01 1.27 16 Total: -1.00 -59.42 359.23 2.57 -56.84 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 1.00 Total: 36.79 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 4.67 Total: -22.78 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -2.14 Total: -58.36 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -2.99 Total: -48.49 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Total: -59.42 2.57 -56.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279520198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.793 kcal (2) G-P(sol) polarization free energy of solvation -59.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds