Wall clock time and date at job start Tue Mar 31 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.97316 * 2 1 4 4 C 1.51453 * 109.97855 * 238.73317 * 2 1 3 5 5 O 1.20761 * 126.34568 * 60.21232 * 4 2 1 6 6 C 1.51929 * 107.26932 * 240.24077 * 4 2 1 7 7 C 1.54882 * 104.43608 * 23.82478 * 6 4 2 8 8 C 1.54278 * 109.98443 * 121.27544 * 2 1 3 9 9 H 1.09003 * 110.56501 * 214.97543 * 8 2 1 10 10 C 1.52993 * 110.57105 * 337.69954 * 8 2 1 11 11 C 1.50697 * 109.47150 * 185.00370 * 10 8 2 12 12 O 1.21286 * 120.00077 * 359.97438 * 11 10 8 13 13 N 1.34780 * 120.00303 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46838 * 179.97438 * 14 13 11 16 16 C 1.38298 * 119.93071 * 269.72629 * 15 14 13 17 17 C 1.38098 * 120.06563 * 179.73022 * 16 15 14 18 18 C 1.38879 * 119.93532 * 0.52343 * 17 16 15 19 19 O 1.35749 * 120.07251 * 179.73289 * 18 17 16 20 20 C 1.34833 * 116.99962 * 174.48691 * 19 18 17 21 21 H 1.07993 * 120.00014 * 5.05669 * 20 19 18 22 22 C 1.38654 * 119.99740 * 185.05318 * 20 19 18 23 23 N 1.31554 * 119.99729 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00166 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46659 * 89.99837 * 24 22 20 26 26 H 1.48497 * 109.46961 * 210.00030 * 24 22 20 27 27 H 1.48499 * 109.47294 * 330.00173 * 24 22 20 28 28 C 1.38875 * 119.85971 * 359.74757 * 18 17 16 29 29 C 1.38107 * 119.92898 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.46972 * 299.29489 * 1 2 3 31 31 H 1.08997 * 109.47296 * 59.29510 * 1 2 3 32 32 H 1.08996 * 109.46897 * 179.29723 * 1 2 3 33 33 H 1.09011 * 110.45971 * 265.07746 * 6 4 2 34 34 H 1.08997 * 110.52750 * 142.60948 * 6 4 2 35 35 H 1.09003 * 110.83294 * 204.14381 * 7 6 4 36 36 H 1.08998 * 110.83249 * 80.56306 * 7 6 4 37 37 H 1.09000 * 109.47036 * 304.99687 * 10 8 2 38 38 H 1.09001 * 109.47858 * 64.99827 * 10 8 2 39 39 H 0.96998 * 119.99326 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.46911 * 299.99828 * 14 13 11 41 41 H 1.08999 * 109.47224 * 60.00105 * 14 13 11 42 42 H 1.07997 * 119.96661 * 359.97438 * 16 15 14 43 43 H 1.08005 * 120.03199 * 180.27226 * 17 16 15 44 44 H 0.96997 * 119.99854 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.04195 * 180.02562 * 28 18 17 46 46 H 1.08000 * 119.96525 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9024 1.0244 0.0000 4 6 2.0475 -0.7388 -1.2167 5 8 1.8379 -0.4520 -2.3708 6 6 2.8784 -1.9076 -0.7150 7 6 2.3376 -2.1823 0.7101 8 6 2.0573 -0.7527 1.2392 9 1 2.9741 -0.2911 1.6062 10 6 0.9956 -0.7856 2.3403 11 6 1.5765 -1.4162 3.5795 12 8 2.7264 -1.8019 3.5817 13 7 0.8182 -1.5517 4.6856 14 6 1.3828 -2.1652 5.8901 15 6 0.3374 -2.1963 6.9751 16 6 0.2242 -1.1353 7.8549 17 6 -0.7365 -1.1584 8.8467 18 6 -1.5823 -2.2533 8.9670 19 8 -2.5240 -2.2814 9.9443 20 6 -3.3853 -3.3187 9.9349 21 1 -3.2568 -4.1207 9.2232 22 6 -4.4359 -3.3557 10.8390 23 7 -5.2765 -4.3676 10.8294 24 14 -4.6576 -1.9687 12.0705 25 1 -5.5274 -0.9188 11.4822 26 1 -5.2885 -2.4996 13.3056 27 1 -3.3331 -1.3852 12.4028 28 6 -1.4624 -3.3197 8.0855 29 6 -0.5027 -3.2886 7.0928 30 1 -0.3633 0.5028 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3633 -1.0276 -0.0126 33 1 3.9335 -1.6362 -0.6760 34 1 2.7340 -2.7804 -1.3517 35 1 3.0902 -2.6810 1.3209 36 1 1.4191 -2.7678 0.6700 37 1 0.6750 0.2314 2.5663 38 1 0.1396 -1.3697 2.0024 39 1 -0.1013 -1.2429 4.6839 40 1 1.7026 -3.1824 5.6640 41 1 2.2392 -1.5817 6.2279 42 1 0.8851 -0.2861 7.7637 43 1 -0.8273 -0.3275 9.5307 44 1 -6.0112 -4.3936 11.4622 45 1 -2.1188 -4.1725 8.1761 46 1 -0.4087 -4.1178 6.4072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280103762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:29 Heat of formation + Delta-G solvation = -111.737166 kcal Electronic energy + Delta-G solvation = -26872.774848 eV Core-core repulsion = 22919.639127 eV Total energy + Delta-G solvation = -3953.135721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40705 -40.96124 -40.28266 -38.63849 -37.71713 -35.54747 -34.43419 -32.70983 -31.92399 -31.77686 -30.76242 -27.83306 -26.60814 -25.90245 -25.23225 -23.70277 -22.17041 -21.81371 -20.85329 -19.84118 -19.64183 -19.12796 -18.32008 -17.27649 -16.98175 -16.76468 -16.49227 -16.27100 -16.01896 -15.77343 -15.69866 -15.60423 -15.20187 -14.78849 -14.59305 -14.36633 -14.24628 -14.14016 -14.03689 -13.72251 -13.56766 -13.34064 -13.09567 -12.97895 -12.83198 -12.56717 -12.45857 -12.30928 -12.27443 -11.93729 -11.85865 -11.57827 -11.37376 -11.29348 -10.94347 -10.72820 -10.36393 -9.95628 -9.81714 -9.07307 -8.50353 -6.23268 0.51518 0.55862 0.91127 1.33017 1.36075 1.52629 1.81036 2.27824 2.36816 2.81357 3.06904 3.13686 3.15998 3.49449 3.69813 3.85548 3.88551 4.03135 4.13477 4.15610 4.21077 4.28899 4.39204 4.46775 4.52183 4.55995 4.61758 4.66232 4.76834 4.82278 4.85120 4.92864 4.94707 4.98257 5.07112 5.12241 5.23687 5.24603 5.35120 5.35321 5.44227 5.53779 5.57514 5.72518 5.79982 5.89443 6.20636 6.48684 6.71334 6.83909 7.39774 7.57259 8.60832 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.001845 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.295508 B =15171.710065 C =15518.137573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 H 0.113 0.887 4 C 0.373 3.627 5 O -0.488 6.488 6 C -0.181 4.181 7 C -0.111 4.111 8 C -0.062 4.062 9 H 0.087 0.913 10 C -0.131 4.131 11 C 0.509 3.491 12 O -0.579 6.579 13 N -0.720 5.720 14 C 0.183 3.817 15 C -0.172 4.172 16 C -0.045 4.045 17 C -0.192 4.192 18 C 0.127 3.873 19 O -0.243 6.243 20 C -0.399 4.399 21 H 0.083 0.917 22 C 0.010 3.990 23 N -0.921 5.921 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.270 1.270 27 H -0.262 1.262 28 C -0.239 4.239 29 C -0.051 4.051 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.411 0.589 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.154 0.846 43 H 0.130 0.870 44 H 0.285 0.715 45 H 0.108 0.892 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.078 9.822 -18.768 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 H 0.131 0.869 4 C 0.251 3.749 5 O -0.364 6.364 6 C -0.219 4.219 7 C -0.148 4.148 8 C -0.081 4.081 9 H 0.105 0.895 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.459 6.459 13 N -0.372 5.372 14 C 0.060 3.940 15 C -0.173 4.173 16 C -0.064 4.064 17 C -0.211 4.211 18 C 0.078 3.922 19 O -0.150 6.150 20 C -0.475 4.475 21 H 0.100 0.900 22 C -0.189 4.189 23 N -0.562 5.562 24 Si 0.793 3.207 25 H -0.190 1.190 26 H -0.195 1.195 27 H -0.186 1.186 28 C -0.258 4.258 29 C -0.070 4.070 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.172 0.828 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.126 0.874 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.556 9.737 -19.086 25.903 hybrid contribution -0.964 -0.236 0.740 1.238 sum 13.592 9.502 -18.347 24.731 Atomic orbital electron populations 1.21836 0.91663 1.03010 1.03627 1.22302 0.98794 1.01536 0.93648 0.86904 1.25462 0.75843 0.84822 0.88801 1.90404 1.53681 1.68779 1.23508 1.22967 1.01811 0.98542 0.98574 1.22485 1.01898 0.96819 0.93613 1.21609 0.98398 0.95850 0.92267 0.89502 1.21899 0.99984 1.04062 0.91085 1.21234 0.85723 0.78210 0.85115 1.90683 1.19377 1.51333 1.84528 1.46214 1.16797 1.62120 1.12063 1.19857 0.93368 0.98572 0.82246 1.19581 1.01064 0.96113 1.00533 1.20953 0.95428 0.98004 0.91995 1.20529 0.99296 0.97699 1.03623 1.19754 0.89601 0.94965 0.87922 1.83523 1.39827 1.45995 1.45684 1.20698 1.06751 0.99387 1.20645 0.89959 1.25291 0.93915 1.00144 0.99560 1.69726 1.16175 1.31850 1.38443 0.85217 0.79161 0.78451 0.77904 1.18970 1.19485 1.18639 1.21274 1.04056 1.00147 1.00331 1.20924 0.92558 0.97931 0.95546 0.88874 0.92950 0.91827 0.86752 0.88793 0.90502 0.90584 0.85998 0.86619 0.75256 0.91614 0.90737 0.82806 0.85208 0.90575 0.87403 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.99 71.98 0.58 -0.64 16 2 C -0.14 -1.43 3.36 -10.86 -0.04 -1.47 16 3 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 4 C 0.37 5.68 7.18 29.74 0.21 5.89 16 5 O -0.49 -11.30 17.99 -1.45 -0.03 -11.32 16 6 C -0.18 -2.11 6.72 30.88 0.21 -1.90 16 7 C -0.11 -1.32 5.80 31.92 0.19 -1.13 16 8 C -0.06 -0.64 2.39 -9.68 -0.02 -0.67 16 9 H 0.09 1.06 7.89 -2.39 -0.02 1.04 16 10 C -0.13 -1.15 3.88 29.84 0.12 -1.04 16 11 C 0.51 8.35 7.65 87.66 0.67 9.03 16 12 O -0.58 -13.81 14.79 -3.05 -0.05 -13.85 16 13 N -0.72 -11.54 5.55 -466.78 -2.59 -14.13 16 14 C 0.18 3.67 5.80 85.63 0.50 4.16 16 15 C -0.17 -4.27 5.25 -19.84 -0.10 -4.38 16 16 C -0.05 -1.16 9.69 22.25 0.22 -0.95 16 17 C -0.19 -6.50 9.99 22.39 0.22 -6.27 16 18 C 0.13 5.47 6.65 22.58 0.15 5.62 16 19 O -0.24 -12.53 8.59 -22.76 -0.20 -12.72 16 20 C -0.40 -22.55 9.95 67.92 0.68 -21.88 16 21 H 0.08 4.88 5.44 -2.91 -0.02 4.86 16 22 C 0.01 0.54 5.49 84.83 0.47 1.00 16 23 N -0.92 -53.60 13.96 21.61 0.30 -53.30 16 24 Si 0.97 43.85 28.62 68.60 1.96 45.81 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 28 C -0.24 -9.57 9.17 22.39 0.21 -9.37 16 29 C -0.05 -1.54 9.69 22.25 0.22 -1.32 16 30 H 0.09 0.41 6.57 -2.39 -0.02 0.40 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.52 7.64 -2.39 -0.02 0.50 16 33 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.18 7.37 -2.39 -0.02 1.17 16 36 H 0.08 0.83 7.96 -2.39 -0.02 0.81 16 37 H 0.12 0.55 7.36 -2.39 -0.02 0.53 16 38 H 0.12 0.69 6.84 -2.39 -0.02 0.68 16 39 H 0.41 5.30 8.46 -92.71 -0.78 4.52 16 40 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 41 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 44 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.11 4.87 5.64 -2.91 -0.02 4.85 16 46 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.06 379.85 4.08 -66.98 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.22 Total: 17.84 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.45 Total: -25.31 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -2.29 Total: -67.43 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.27 Total: -37.90 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.96 Total: 45.81 kcal Total: -71.06 4.08 -66.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280103762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.760 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds