Wall clock time and date at job start Tue Mar 31 2020 17:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.00450 * 2 1 4 4 C 1.51690 * 110.13161 * 121.35517 * 2 1 3 5 5 O 1.20759 * 126.31553 * 298.94750 * 4 2 1 6 6 C 1.51845 * 107.34238 * 118.80405 * 4 2 1 7 7 C 1.54888 * 104.43481 * 23.91346 * 6 4 2 8 8 C 1.54282 * 109.98114 * 238.71045 * 2 1 3 9 9 H 1.08991 * 110.57438 * 336.24273 * 8 2 1 10 10 C 1.53001 * 110.56880 * 98.96383 * 8 2 1 11 11 C 1.50692 * 109.47360 * 182.94526 * 10 8 2 12 12 O 1.21284 * 119.99973 * 359.97438 * 11 10 8 13 13 N 1.34772 * 120.00599 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00610 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47200 * 179.97438 * 14 13 11 16 16 C 1.38302 * 119.93412 * 269.72652 * 15 14 13 17 17 C 1.38097 * 120.06810 * 179.73023 * 16 15 14 18 18 C 1.38882 * 119.93297 * 0.54453 * 17 16 15 19 19 O 1.35749 * 120.06992 * 179.75097 * 18 17 16 20 20 C 1.34831 * 116.99912 * 174.44048 * 19 18 17 21 21 H 1.07998 * 119.99993 * 5.06136 * 20 19 18 22 22 C 1.38653 * 120.00019 * 185.05808 * 20 19 18 23 23 N 1.31554 * 119.99756 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00018 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46927 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46798 * 119.99886 * 24 22 20 27 27 H 1.48494 * 109.47100 * 239.99909 * 24 22 20 28 28 C 1.38875 * 119.85822 * 359.72943 * 18 17 16 29 29 C 1.38096 * 119.93329 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47274 * 181.29326 * 1 2 3 31 31 H 1.09000 * 109.46875 * 301.28768 * 1 2 3 32 32 H 1.09000 * 109.47277 * 61.28853 * 1 2 3 33 33 H 1.08999 * 110.43931 * 265.17695 * 6 4 2 34 34 H 1.08999 * 110.44146 * 142.65509 * 6 4 2 35 35 H 1.08996 * 110.83209 * 204.16244 * 7 6 4 36 36 H 1.09004 * 111.00060 * 80.66470 * 7 6 4 37 37 H 1.09002 * 109.47468 * 62.94312 * 10 8 2 38 38 H 1.09007 * 109.46843 * 302.94554 * 10 8 2 39 39 H 0.97004 * 119.99409 * 359.97438 * 13 11 10 40 40 H 1.08994 * 109.47028 * 300.00079 * 14 13 11 41 41 H 1.09002 * 109.46824 * 59.99736 * 14 13 11 42 42 H 1.08000 * 119.95972 * 0.02562 * 16 15 14 43 43 H 1.08007 * 120.03226 * 180.28029 * 17 16 15 44 44 H 0.97006 * 119.99602 * 179.97438 * 23 22 20 45 45 H 1.08006 * 120.03306 * 180.02562 * 28 18 17 46 46 H 1.08005 * 119.96331 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0521 -0.7411 1.2162 5 8 1.8561 -0.4477 2.3711 6 6 2.8636 -1.9217 0.7130 7 6 3.3046 -1.5075 -0.7128 8 6 2.0572 -0.7531 -1.2391 9 1 1.3104 -1.4570 -1.6059 10 6 2.4507 0.2334 -2.3405 11 6 2.8930 -0.5288 -3.5629 12 8 2.8940 -1.7416 -3.5539 13 7 3.2876 0.1371 -4.6662 14 6 3.7181 -0.6038 -5.8544 15 6 4.1043 0.3678 -6.9396 16 6 3.1547 0.8035 -7.8458 17 6 3.5043 1.6981 -8.8380 18 6 4.8136 2.1516 -8.9323 19 8 5.1614 3.0271 -9.9097 20 6 6.4177 3.5155 -9.8753 21 1 7.1209 3.1459 -9.1437 22 6 6.8069 4.4921 -10.7793 23 7 5.9504 4.9419 -11.6709 24 14 8.5476 5.1682 -10.7321 25 1 9.3085 4.5007 -9.6456 26 1 9.2144 4.9098 -12.0337 27 1 8.5038 6.6309 -10.4801 28 6 5.7661 1.7078 -8.0244 29 6 5.4089 0.8179 -7.0307 30 1 -0.3634 -1.0274 0.0232 31 1 -0.3633 0.5337 0.8782 32 1 -0.3634 0.4937 -0.9013 33 1 2.2463 -2.8193 0.6748 34 1 3.7340 -2.0840 1.3487 35 1 3.5134 -2.3852 -1.3243 36 1 4.1709 -0.8469 -0.6773 37 1 3.2682 0.8630 -1.9893 38 1 1.5934 0.8578 -2.5921 39 1 3.2864 1.1072 -4.6735 40 1 4.5758 -1.2275 -5.6026 41 1 2.9010 -1.2341 -6.2053 42 1 2.1376 0.4474 -7.7743 43 1 2.7612 2.0415 -9.5426 44 1 6.2226 5.6254 -12.3031 45 1 6.7851 2.0589 -8.0949 46 1 6.1492 0.4727 -6.3240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280103779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:43 Heat of formation + Delta-G solvation = -98.887230 kcal Electronic energy + Delta-G solvation = -26723.099252 eV Core-core repulsion = 22770.520747 eV Total energy + Delta-G solvation = -3952.578506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60928 -39.63668 -39.05884 -37.17814 -36.69856 -34.44062 -32.42863 -31.92210 -31.34171 -30.32900 -29.70903 -26.26730 -25.39160 -25.02482 -24.18480 -22.10543 -21.29368 -20.68193 -20.20174 -19.44520 -18.12495 -17.47016 -16.98439 -16.43394 -16.14119 -15.77506 -15.51483 -14.87611 -14.74397 -14.65430 -14.35514 -14.18742 -13.98934 -13.77330 -13.71390 -13.44341 -13.22297 -12.91619 -12.83990 -12.67565 -12.57702 -12.24601 -12.01632 -11.74646 -11.68400 -11.47953 -11.37110 -11.06845 -11.00915 -10.96864 -10.83492 -10.73160 -10.51192 -9.97676 -9.64148 -9.46918 -9.01502 -8.95276 -8.33853 -7.37414 -6.57049 -4.15980 1.56776 2.01710 2.07890 2.60334 3.04065 3.06643 3.12297 3.29713 3.70887 3.86795 4.07717 4.27084 4.37315 4.46710 4.74609 4.77980 4.81046 4.91263 4.97646 5.03335 5.06555 5.10342 5.15053 5.24594 5.31535 5.36880 5.39982 5.51280 5.54843 5.59084 5.61080 5.72934 5.75046 5.85096 5.90450 6.00440 6.07392 6.29833 6.45952 6.55160 6.75329 6.91116 7.09378 7.12739 7.22134 7.30682 7.54146 7.66945 7.87651 8.20450 8.88394 9.56205 10.60445 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.001804 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.850930 B =15514.350856 C =15873.362873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.152 4.152 3 H 0.104 0.896 4 C 0.373 3.627 5 O -0.448 6.448 6 C -0.184 4.184 7 C -0.114 4.114 8 C -0.068 4.068 9 H 0.094 0.906 10 C -0.137 4.137 11 C 0.509 3.491 12 O -0.546 6.546 13 N -0.723 5.723 14 C 0.179 3.821 15 C -0.216 4.216 16 C -0.055 4.055 17 C -0.195 4.195 18 C 0.160 3.840 19 O -0.173 6.173 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.040 3.960 23 N -0.858 5.858 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.237 4.237 29 C -0.051 4.051 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.128 0.872 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 -9.067 19.275 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 H 0.122 0.878 4 C 0.248 3.752 5 O -0.320 6.320 6 C -0.221 4.221 7 C -0.151 4.151 8 C -0.087 4.087 9 H 0.112 0.888 10 C -0.177 4.177 11 C 0.295 3.705 12 O -0.424 6.424 13 N -0.374 5.374 14 C 0.057 3.943 15 C -0.217 4.217 16 C -0.073 4.073 17 C -0.215 4.215 18 C 0.106 3.894 19 O -0.076 6.076 20 C -0.469 4.469 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.493 5.493 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.256 4.256 29 C -0.070 4.070 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.146 0.854 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.013 -9.516 19.478 22.784 hybrid contribution 1.001 0.919 -0.220 1.377 sum -6.011 -8.596 19.258 21.929 Atomic orbital electron populations 1.21682 0.92357 1.02630 1.02871 1.22428 0.98141 1.01545 0.95016 0.87772 1.25098 0.76056 0.85114 0.88924 1.90412 1.51854 1.67957 1.21797 1.22937 1.01458 0.98960 0.98771 1.22534 0.97003 1.01715 0.93864 1.21733 0.98434 0.96321 0.92170 0.88786 1.21756 1.03244 0.99005 0.93654 1.20602 0.77209 0.88339 0.84321 1.90676 1.54314 1.13974 1.83425 1.46397 1.66692 1.10741 1.13613 1.19964 0.99234 0.92454 0.82642 1.19209 0.94723 1.06642 1.01135 1.20527 0.97829 0.95347 0.93646 1.20223 0.94450 1.04078 1.02715 1.19441 0.92802 0.89564 0.87642 1.83979 1.32286 1.50361 1.40939 1.21405 0.85694 1.20884 1.18961 0.88850 1.25329 1.00139 0.95818 0.95219 1.70046 1.34790 1.27336 1.17090 0.85624 0.80070 0.78908 0.78707 1.19036 1.20048 1.20041 1.21164 1.00636 1.04373 0.99459 1.20638 0.94815 0.95100 0.96429 0.92177 0.91953 0.91263 0.87734 0.89091 0.88929 0.91080 0.88690 0.88598 0.76383 0.91645 0.91612 0.86986 0.86375 0.91896 0.85416 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.09 37.16 0.34 -0.49 16 2 C -0.15 -0.99 3.02 -90.61 -0.27 -1.26 16 3 H 0.10 0.60 7.83 -51.93 -0.41 0.19 16 4 C 0.37 3.15 7.20 -27.98 -0.20 2.95 16 5 O -0.45 -5.34 17.99 6.00 0.11 -5.23 16 6 C -0.18 -1.23 6.72 -26.32 -0.18 -1.41 16 7 C -0.11 -0.82 5.73 -24.69 -0.14 -0.96 16 8 C -0.07 -0.46 2.01 -88.90 -0.18 -0.64 16 9 H 0.09 0.73 7.67 -51.93 -0.40 0.33 16 10 C -0.14 -0.92 5.05 -27.89 -0.14 -1.06 16 11 C 0.51 5.31 7.63 -10.99 -0.08 5.22 16 12 O -0.55 -7.44 14.66 5.55 0.08 -7.36 16 13 N -0.72 -7.69 5.55 -61.48 -0.34 -8.03 16 14 C 0.18 2.28 5.80 -5.20 -0.03 2.25 16 15 C -0.22 -3.24 5.25 -104.58 -0.55 -3.79 16 16 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 17 C -0.20 -3.80 9.99 -39.39 -0.39 -4.19 16 18 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 19 O -0.17 -4.71 9.76 0.05 0.00 -4.71 16 20 C -0.39 -10.50 9.49 30.89 0.29 -10.21 16 21 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.30 13.67 55.48 0.76 -23.54 16 24 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 28 C -0.24 -4.75 9.17 -39.40 -0.36 -5.11 16 29 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.81 7.23 -51.93 -0.38 0.43 16 36 H 0.07 0.48 7.99 -51.93 -0.41 0.07 16 37 H 0.09 0.51 8.06 -51.93 -0.42 0.10 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.75 8.46 -40.82 -0.35 3.40 16 40 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.13 2.59 5.64 -52.48 -0.30 2.30 16 46 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -31.69 385.75 -8.33 -40.02 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.71 Total: 5.23 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -3.02 Total: -16.87 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.42 Total: -31.57 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.19 Total: -17.29 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.69 -8.33 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280103779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.863 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds