Wall clock time and date at job start Tue Mar 31 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.00450 * 2 1 4 4 C 1.51690 * 110.13161 * 121.35517 * 2 1 3 5 5 O 1.20759 * 126.31553 * 298.94750 * 4 2 1 6 6 C 1.51845 * 107.34238 * 118.80405 * 4 2 1 7 7 C 1.54888 * 104.43481 * 23.91346 * 6 4 2 8 8 C 1.54282 * 109.98114 * 238.71045 * 2 1 3 9 9 H 1.08991 * 110.57438 * 336.24273 * 8 2 1 10 10 C 1.53001 * 110.56880 * 98.96383 * 8 2 1 11 11 C 1.50692 * 109.47360 * 182.94526 * 10 8 2 12 12 O 1.21284 * 119.99973 * 359.97438 * 11 10 8 13 13 N 1.34772 * 120.00599 * 179.97438 * 11 10 8 14 14 C 1.46500 * 120.00610 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47200 * 179.97438 * 14 13 11 16 16 C 1.38302 * 119.93412 * 269.72652 * 15 14 13 17 17 C 1.38097 * 120.06810 * 179.73023 * 16 15 14 18 18 C 1.38882 * 119.93297 * 0.54453 * 17 16 15 19 19 O 1.35749 * 120.06992 * 179.75097 * 18 17 16 20 20 C 1.34831 * 116.99912 * 174.44048 * 19 18 17 21 21 H 1.07998 * 119.99993 * 5.06136 * 20 19 18 22 22 C 1.38653 * 120.00019 * 185.05808 * 20 19 18 23 23 N 1.31554 * 119.99756 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00018 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46927 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46798 * 119.99886 * 24 22 20 27 27 H 1.48494 * 109.47100 * 239.99909 * 24 22 20 28 28 C 1.38875 * 119.85822 * 359.72943 * 18 17 16 29 29 C 1.38096 * 119.93329 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47274 * 181.29326 * 1 2 3 31 31 H 1.09000 * 109.46875 * 301.28768 * 1 2 3 32 32 H 1.09000 * 109.47277 * 61.28853 * 1 2 3 33 33 H 1.08999 * 110.43931 * 265.17695 * 6 4 2 34 34 H 1.08999 * 110.44146 * 142.65509 * 6 4 2 35 35 H 1.08996 * 110.83209 * 204.16244 * 7 6 4 36 36 H 1.09004 * 111.00060 * 80.66470 * 7 6 4 37 37 H 1.09002 * 109.47468 * 62.94312 * 10 8 2 38 38 H 1.09007 * 109.46843 * 302.94554 * 10 8 2 39 39 H 0.97004 * 119.99409 * 359.97438 * 13 11 10 40 40 H 1.08994 * 109.47028 * 300.00079 * 14 13 11 41 41 H 1.09002 * 109.46824 * 59.99736 * 14 13 11 42 42 H 1.08000 * 119.95972 * 0.02562 * 16 15 14 43 43 H 1.08007 * 120.03226 * 180.28029 * 17 16 15 44 44 H 0.97006 * 119.99602 * 179.97438 * 23 22 20 45 45 H 1.08006 * 120.03306 * 180.02562 * 28 18 17 46 46 H 1.08005 * 119.96331 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0521 -0.7411 1.2162 5 8 1.8561 -0.4477 2.3711 6 6 2.8636 -1.9217 0.7130 7 6 3.3046 -1.5075 -0.7128 8 6 2.0572 -0.7531 -1.2391 9 1 1.3104 -1.4570 -1.6059 10 6 2.4507 0.2334 -2.3405 11 6 2.8930 -0.5288 -3.5629 12 8 2.8940 -1.7416 -3.5539 13 7 3.2876 0.1371 -4.6662 14 6 3.7181 -0.6038 -5.8544 15 6 4.1043 0.3678 -6.9396 16 6 3.1547 0.8035 -7.8458 17 6 3.5043 1.6981 -8.8380 18 6 4.8136 2.1516 -8.9323 19 8 5.1614 3.0271 -9.9097 20 6 6.4177 3.5155 -9.8753 21 1 7.1209 3.1459 -9.1437 22 6 6.8069 4.4921 -10.7793 23 7 5.9504 4.9419 -11.6709 24 14 8.5476 5.1682 -10.7321 25 1 9.3085 4.5007 -9.6456 26 1 9.2144 4.9098 -12.0337 27 1 8.5038 6.6309 -10.4801 28 6 5.7661 1.7078 -8.0244 29 6 5.4089 0.8179 -7.0307 30 1 -0.3634 -1.0274 0.0232 31 1 -0.3633 0.5337 0.8782 32 1 -0.3634 0.4937 -0.9013 33 1 2.2463 -2.8193 0.6748 34 1 3.7340 -2.0840 1.3487 35 1 3.5134 -2.3852 -1.3243 36 1 4.1709 -0.8469 -0.6773 37 1 3.2682 0.8630 -1.9893 38 1 1.5934 0.8578 -2.5921 39 1 3.2864 1.1072 -4.6735 40 1 4.5758 -1.2275 -5.6026 41 1 2.9010 -1.2341 -6.2053 42 1 2.1376 0.4474 -7.7743 43 1 2.7612 2.0415 -9.5426 44 1 6.2226 5.6254 -12.3031 45 1 6.7851 2.0589 -8.0949 46 1 6.1492 0.4727 -6.3240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280103779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:42 Heat of formation + Delta-G solvation = -118.285463 kcal Electronic energy + Delta-G solvation = -26723.940423 eV Core-core repulsion = 22770.520747 eV Total energy + Delta-G solvation = -3953.419676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31680 -40.86075 -40.26193 -38.52889 -37.59585 -35.53083 -34.26667 -32.48206 -32.13858 -31.80604 -30.87602 -27.73272 -26.69745 -25.62565 -25.10536 -23.63281 -22.23837 -21.85031 -20.95825 -20.05906 -19.86093 -18.89629 -18.09388 -17.18115 -16.85196 -16.68810 -16.54795 -16.26745 -16.08260 -15.69380 -15.52784 -15.48230 -15.13174 -14.81317 -14.63664 -14.45719 -14.31421 -14.18390 -13.82055 -13.63031 -13.48263 -13.14769 -13.12902 -13.01364 -12.65148 -12.56276 -12.34131 -12.27987 -12.21285 -12.09167 -11.90520 -11.60149 -11.50638 -11.18909 -10.89609 -10.73837 -10.32252 -9.95023 -9.79311 -8.98851 -8.48166 -6.16199 0.56965 0.59042 0.91485 1.36342 1.43489 1.54037 1.81042 2.17063 2.38038 2.87069 3.13565 3.18561 3.49863 3.51459 3.69015 3.83696 3.90952 4.05046 4.15684 4.18939 4.24052 4.28650 4.39997 4.48816 4.52945 4.57522 4.58439 4.62541 4.80587 4.83729 4.86736 4.90902 5.00357 5.04758 5.06528 5.08606 5.15479 5.26271 5.28223 5.30694 5.46372 5.53017 5.57601 5.70597 5.77012 6.02190 6.18012 6.48903 6.71610 6.96978 7.39709 7.76687 8.74855 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.001804 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.850930 B =15514.350856 C =15873.362873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 H 0.118 0.882 4 C 0.373 3.627 5 O -0.488 6.488 6 C -0.181 4.181 7 C -0.111 4.111 8 C -0.063 4.063 9 H 0.086 0.914 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.578 6.578 13 N -0.720 5.720 14 C 0.185 3.815 15 C -0.180 4.180 16 C -0.044 4.044 17 C -0.205 4.205 18 C 0.121 3.879 19 O -0.230 6.230 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.023 4.023 23 N -0.919 5.919 24 Si 1.018 2.982 25 H -0.250 1.250 26 H -0.271 1.271 27 H -0.269 1.269 28 C -0.244 4.244 29 C -0.047 4.047 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.411 0.589 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.148 0.852 43 H 0.114 0.886 44 H 0.273 0.727 45 H 0.119 0.881 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -10.096 21.658 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 H 0.136 0.864 4 C 0.251 3.749 5 O -0.364 6.364 6 C -0.218 4.218 7 C -0.149 4.149 8 C -0.082 4.082 9 H 0.104 0.896 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.458 6.458 13 N -0.372 5.372 14 C 0.062 3.938 15 C -0.181 4.181 16 C -0.063 4.063 17 C -0.225 4.225 18 C 0.070 3.930 19 O -0.137 6.137 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.557 5.557 24 Si 0.837 3.163 25 H -0.174 1.174 26 H -0.196 1.196 27 H -0.194 1.194 28 C -0.263 4.263 29 C -0.065 4.065 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.247 0.753 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.165 0.835 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.035 -10.581 21.902 25.321 hybrid contribution 0.800 0.922 -0.706 1.410 sum -6.235 -9.659 21.196 24.113 Atomic orbital electron populations 1.21703 0.91897 1.02697 1.03294 1.22381 0.98412 1.01874 0.93626 0.86383 1.25493 0.75316 0.85369 0.88770 1.90403 1.53475 1.69079 1.23412 1.22944 1.01559 0.98712 0.98601 1.22485 0.97484 1.01310 0.93577 1.21665 0.97977 0.96239 0.92280 0.89577 1.21792 1.04823 0.98792 0.91581 1.21164 0.76163 0.88041 0.84814 1.90680 1.55569 1.15620 1.83961 1.46237 1.66747 1.11143 1.13070 1.19829 0.99707 0.91732 0.82561 1.19537 0.93750 1.04439 1.00415 1.20887 0.99748 0.93608 0.92024 1.20464 0.93379 1.04849 1.03762 1.20004 0.94663 0.90018 0.88312 1.83948 1.32761 1.53149 1.43805 1.21861 0.86207 1.21296 1.19416 0.87884 1.26579 1.04817 0.96000 0.94661 1.70186 1.37425 1.29137 1.18944 0.84535 0.74368 0.78219 0.79150 1.17359 1.19566 1.19379 1.21248 0.99880 1.05208 1.00012 1.20945 0.96223 0.93699 0.95631 0.92323 0.92647 0.89759 0.86883 0.88695 0.90440 0.90453 0.86633 0.86299 0.75311 0.91342 0.91117 0.83456 0.86797 0.91834 0.86330 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.09 71.98 0.65 -0.68 16 2 C -0.14 -1.47 3.02 -10.79 -0.03 -1.51 16 3 H 0.12 0.93 7.83 -2.39 -0.02 0.92 16 4 C 0.37 5.71 7.20 29.78 0.21 5.92 16 5 O -0.49 -11.30 17.99 -1.45 -0.03 -11.33 16 6 C -0.18 -2.12 6.72 30.86 0.21 -1.91 16 7 C -0.11 -1.34 5.73 31.92 0.18 -1.15 16 8 C -0.06 -0.67 2.01 -9.68 -0.02 -0.69 16 9 H 0.09 1.10 7.67 -2.39 -0.02 1.08 16 10 C -0.13 -1.20 5.05 29.85 0.15 -1.05 16 11 C 0.51 8.64 7.63 87.65 0.67 9.31 16 12 O -0.58 -14.00 14.66 -3.04 -0.04 -14.05 16 13 N -0.72 -12.15 5.55 -466.81 -2.59 -14.74 16 14 C 0.18 3.90 5.80 85.63 0.50 4.39 16 15 C -0.18 -4.76 5.25 -19.84 -0.10 -4.86 16 16 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 17 C -0.21 -7.95 9.99 22.39 0.22 -7.73 16 18 C 0.12 5.61 6.65 22.58 0.15 5.76 16 19 O -0.23 -13.28 9.76 -22.74 -0.22 -13.50 16 20 C -0.41 -23.02 9.49 67.92 0.64 -22.38 16 21 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 22 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 23 N -0.92 -54.93 13.67 21.61 0.30 -54.63 16 24 Si 1.02 41.39 29.55 68.60 2.03 43.42 16 25 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 28 C -0.24 -9.71 9.17 22.39 0.21 -9.51 16 29 C -0.05 -1.40 9.69 22.25 0.22 -1.18 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.22 7.23 -2.39 -0.02 1.20 16 36 H 0.08 0.83 7.99 -2.39 -0.02 0.81 16 37 H 0.12 0.67 8.06 -2.39 -0.02 0.65 16 38 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.41 5.72 8.46 -92.71 -0.78 4.94 16 40 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 41 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 43 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 45 H 0.12 4.87 5.64 -2.91 -0.02 4.85 16 46 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -74.24 385.75 4.20 -70.05 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.22 Total: 23.89 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 4.54 Total: -29.10 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -2.29 Total: -69.37 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.29 Total: -38.88 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -74.24 4.20 -70.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280103779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.240 kcal (2) G-P(sol) polarization free energy of solvation -74.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds