Wall clock time and date at job start Tue Mar 31 2020 17:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.55119 * 2 1 4 4 C 1.53737 * 109.43933 * 120.27495 * 2 1 3 5 5 N 1.47165 * 108.28399 * 172.90346 * 4 2 1 6 6 C 1.34782 * 121.04962 * 128.88790 * 5 4 2 7 7 O 1.21582 * 119.99394 * 175.60473 * 6 5 4 8 8 C 1.47638 * 120.00328 * 355.61187 * 6 5 4 9 9 C 1.40011 * 119.89434 * 220.43480 * 8 6 5 10 10 C 1.36316 * 120.10632 * 180.02562 * 9 8 6 11 11 C 1.40888 * 119.89178 * 0.24501 * 10 9 8 12 12 C 1.41111 * 120.10429 * 179.70386 * 11 10 9 13 13 H 1.08004 * 119.99745 * 27.75742 * 12 11 10 14 14 C 1.40227 * 119.99975 * 207.76131 * 12 11 10 15 15 N 1.30641 * 120.00064 * 14.09350 * 14 12 11 16 16 Si 1.86800 * 119.99595 * 194.09262 * 14 12 11 17 17 H 1.48498 * 109.47511 * 60.00238 * 16 14 12 18 18 H 1.48508 * 109.46750 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47646 * 299.99552 * 16 14 12 20 20 C 1.40892 * 119.79144 * 359.43633 * 11 10 9 21 21 C 1.36310 * 119.89043 * 0.59021 * 20 11 10 22 22 C 1.47284 * 117.89359 * 308.61609 * 5 4 2 23 23 C 1.52646 * 108.38175 * 49.84308 * 22 5 4 24 24 C 1.53978 * 110.14007 * 71.74597 * 23 22 5 25 25 C 1.54616 * 103.87128 * 118.23149 * 24 23 22 26 26 O 1.44469 * 104.82151 * 23.89935 * 25 24 23 27 27 C 1.44558 * 105.37003 * 319.84213 * 26 25 24 28 28 O 1.42212 * 110.84096 * 309.26969 * 23 22 5 29 29 H 1.09005 * 109.47125 * 180.13073 * 1 2 3 30 30 H 1.09001 * 109.46868 * 300.12417 * 1 2 3 31 31 H 1.08999 * 109.47462 * 60.12636 * 1 2 3 32 32 H 1.09003 * 109.80093 * 53.23812 * 4 2 1 33 33 H 1.09001 * 109.69963 * 292.51273 * 4 2 1 34 34 H 1.07997 * 119.94805 * 359.97438 * 9 8 6 35 35 H 1.08001 * 120.05272 * 179.97438 * 10 9 8 36 36 H 0.97005 * 120.00059 * 180.02562 * 15 14 12 37 37 H 1.08005 * 120.04989 * 180.28988 * 20 11 10 38 38 H 1.07999 * 119.94557 * 179.72714 * 21 20 11 39 39 H 1.09002 * 109.67772 * 169.56471 * 22 5 4 40 40 H 1.08997 * 109.68231 * 290.11557 * 22 5 4 41 41 H 1.08997 * 110.54678 * 236.82920 * 24 23 22 42 42 H 1.09005 * 110.54771 * 359.64204 * 24 23 22 43 43 H 1.08999 * 110.36286 * 142.73006 * 25 24 23 44 44 H 1.08998 * 110.37283 * 265.05843 * 25 24 23 45 45 H 1.08994 * 110.39664 * 281.17620 * 27 26 25 46 46 H 1.09005 * 110.39223 * 158.78685 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0417 -0.7309 1.2520 5 7 3.5029 -0.8668 1.1424 6 6 4.3142 -0.4830 2.1480 7 8 5.5119 -0.6771 2.0705 8 6 3.7484 0.1730 3.3435 9 6 4.4193 1.2528 3.9303 10 6 3.9011 1.8614 5.0345 11 6 2.6911 1.3987 5.5884 12 6 2.1538 2.0213 6.7351 13 1 2.3655 3.0616 6.9340 14 6 1.3452 1.2894 7.6165 15 7 1.3087 -0.0143 7.5397 16 14 0.3202 2.1785 8.9003 17 1 -0.6282 3.1004 8.2250 18 1 -0.4407 1.1856 9.7006 19 1 1.2139 2.9563 9.7956 20 6 2.0162 0.3161 4.9905 21 6 2.5425 -0.2864 3.8868 22 6 4.0504 -1.4412 -0.0984 23 6 3.4247 -0.7110 -1.2839 24 6 3.9896 0.7179 -1.3845 25 6 4.6912 0.7430 -2.7621 26 8 4.0382 -0.2932 -3.5283 27 6 3.8398 -1.3863 -2.6034 28 8 2.0078 -0.6769 -1.1665 29 1 -0.3634 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.5857 -1.7190 1.3149 33 1 1.7934 -0.1528 2.1421 34 1 5.3492 1.6037 3.5078 35 1 4.4195 2.6940 5.4866 36 1 0.7490 -0.5206 8.1491 37 1 1.0860 -0.0390 5.4089 38 1 2.0282 -1.1192 3.4303 39 1 5.1325 -1.3113 -0.1167 40 1 3.8066 -2.5023 -0.1505 41 1 3.1836 1.4510 -1.3522 42 1 4.7082 0.9024 -0.5859 43 1 4.5531 1.7126 -3.2404 44 1 5.7526 0.5213 -2.6514 45 1 4.7668 -1.9437 -2.4695 46 1 3.0474 -2.0452 -2.9585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280624470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:25 Heat of formation + Delta-G solvation = -91.394802 kcal Electronic energy + Delta-G solvation = -29340.457360 eV Core-core repulsion = 25388.203750 eV Total energy + Delta-G solvation = -3952.253610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93283 -39.13427 -37.73541 -37.13199 -34.50965 -33.94542 -33.27244 -30.82210 -30.38341 -29.62366 -29.24465 -26.73949 -26.32778 -24.92035 -23.17871 -22.10418 -21.75328 -21.07492 -19.82689 -18.87331 -17.57506 -17.31488 -16.79287 -16.25346 -16.19647 -15.74477 -15.39097 -15.11026 -14.73829 -14.47414 -14.15800 -14.06895 -13.76056 -13.42455 -12.91374 -12.80392 -12.78963 -12.58222 -12.33285 -12.23580 -12.06690 -11.78094 -11.72148 -11.55583 -11.44519 -11.34500 -11.27815 -11.06541 -11.00826 -10.71774 -10.50986 -10.13449 -10.00234 -9.92079 -9.58848 -9.46063 -9.03439 -8.28750 -7.75038 -7.57442 -7.03093 -4.65163 2.21893 2.89045 2.91063 2.93002 2.95582 3.20909 3.41556 3.60096 3.73020 3.78853 4.37877 4.41860 4.56349 4.68251 4.82665 4.91797 5.05742 5.08093 5.23036 5.27643 5.30345 5.41090 5.48156 5.54356 5.59914 5.63780 5.64524 5.76844 5.79839 5.88721 5.89228 5.99451 6.01932 6.15072 6.18081 6.55044 6.67069 6.71969 6.80184 6.94568 7.04833 7.16994 7.36494 7.50007 7.70397 7.78663 7.89984 8.01415 8.34526 8.59120 8.68111 8.80119 9.89809 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.003069 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.171609 B = 9120.684471 C = 9678.669447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.066 0.934 4 C 0.063 3.937 5 N -0.619 5.619 6 C 0.580 3.420 7 O -0.564 6.564 8 C -0.277 4.277 9 C -0.030 4.030 10 C -0.232 4.232 11 C 0.128 3.872 12 C -0.448 4.448 13 H 0.083 0.917 14 C 0.074 3.926 15 N -0.778 5.778 16 Si 0.914 3.086 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.170 4.170 21 C -0.076 4.076 22 C 0.096 3.904 23 C 0.078 3.922 24 C -0.178 4.178 25 C 0.048 3.952 26 O -0.371 6.371 27 C 0.063 3.937 28 O -0.362 6.362 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.287 0.713 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 -0.882 -13.064 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.059 4.059 5 N -0.353 5.353 6 C 0.375 3.625 7 O -0.444 6.444 8 C -0.281 4.281 9 C -0.049 4.049 10 C -0.251 4.251 11 C 0.125 3.875 12 C -0.476 4.476 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.402 5.402 16 Si 0.738 3.262 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.189 4.189 21 C -0.094 4.094 22 C -0.027 4.027 23 C 0.037 3.963 24 C -0.216 4.216 25 C -0.029 4.029 26 O -0.289 6.289 27 C -0.015 4.015 28 O -0.282 6.282 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.780 -1.280 -13.322 13.501 hybrid contribution -0.259 0.292 1.156 1.221 sum -2.040 -0.987 -12.166 12.375 Atomic orbital electron populations 1.21722 0.92174 1.03137 1.02932 1.22701 0.95370 0.95891 0.84782 0.91566 1.23163 0.80299 1.01842 1.00632 1.48057 1.06780 1.64392 1.16079 1.18785 0.85303 0.76039 0.82343 1.90652 1.15727 1.57011 1.81001 1.18789 1.01745 1.06147 1.01408 1.20236 0.96463 0.93808 0.94389 1.20722 0.98420 1.05296 1.00678 1.17761 0.88960 0.90132 0.90616 1.19772 1.24551 0.98369 1.04901 0.89866 1.26058 0.95296 0.94698 0.98570 1.69710 1.30443 1.06834 1.33202 0.86255 0.80044 0.80044 0.79866 1.18530 1.20078 1.18728 1.20999 1.01546 1.00497 0.95897 1.20621 0.93989 0.98260 0.96567 1.21988 1.00273 0.97073 0.83396 1.22715 0.82759 0.95069 0.95782 1.23516 1.01805 0.97567 0.98720 1.23418 0.96254 0.92475 0.90762 1.89166 1.79944 1.26287 1.33505 1.23272 1.01170 0.90239 0.86794 1.87844 1.18983 1.77630 1.43711 0.91661 0.90300 0.91692 0.91222 0.85449 0.88730 0.88331 0.90216 0.86133 0.88325 0.88238 0.91234 0.89696 0.89477 0.88916 0.91926 0.90463 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 37.16 0.36 -1.16 16 2 C 0.07 0.92 3.13 -26.35 -0.08 0.84 16 3 H 0.07 0.90 6.50 -51.93 -0.34 0.57 16 4 C 0.06 0.93 4.48 -3.30 -0.01 0.91 16 5 N -0.62 -10.30 2.90 -173.47 -0.50 -10.80 16 6 C 0.58 11.94 7.36 -12.42 -0.09 11.85 16 7 O -0.56 -13.02 16.43 5.29 0.09 -12.93 16 8 C -0.28 -6.05 5.38 -104.73 -0.56 -6.61 16 9 C -0.03 -0.67 9.56 -39.61 -0.38 -1.05 16 10 C -0.23 -5.38 9.73 -39.27 -0.38 -5.77 16 11 C 0.13 3.15 5.55 -106.80 -0.59 2.56 16 12 C -0.45 -10.84 9.05 -37.75 -0.34 -11.18 16 13 H 0.08 1.92 7.89 -52.48 -0.41 1.51 16 14 C 0.07 1.70 5.19 -17.31 -0.09 1.61 16 15 N -0.78 -18.43 10.96 55.56 0.61 -17.82 16 16 Si 0.91 17.00 29.58 -169.99 -5.03 11.97 16 17 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 18 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 C -0.17 -3.99 8.60 -39.27 -0.34 -4.32 16 21 C -0.08 -1.61 7.27 -39.61 -0.29 -1.90 16 22 C 0.10 1.36 4.95 -3.80 -0.02 1.34 16 23 C 0.08 0.99 1.05 -89.81 -0.09 0.89 16 24 C -0.18 -2.22 5.77 -25.37 -0.15 -2.36 16 25 C 0.05 0.52 7.65 38.01 0.29 0.81 16 26 O -0.37 -4.66 11.65 -35.23 -0.41 -5.07 16 27 C 0.06 0.69 6.93 37.64 0.26 0.95 16 28 O -0.36 -4.92 9.84 -35.23 -0.35 -5.26 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.13 2.04 4.08 -51.93 -0.21 1.83 16 34 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 36 H 0.29 6.15 8.29 -40.82 -0.34 5.82 16 37 H 0.12 2.88 6.27 -52.48 -0.33 2.55 16 38 H 0.10 1.86 6.01 -52.49 -0.32 1.54 16 39 H 0.10 1.48 7.05 -51.93 -0.37 1.11 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.07 6.63 -51.93 -0.34 0.73 16 42 H 0.09 1.20 7.67 -51.93 -0.40 0.80 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 46 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -28.18 363.31 -9.12 -37.30 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.48 Total: 9.73 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.51 Total: -12.59 kcal Atomic # 7 Polarization: -28.73 SS G_CDS: 0.11 Total: -28.62 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.67 Total: -23.27 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.18 -9.12 -37.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280624470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.095 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds