Wall clock time and date at job start Tue Mar 31 2020 17:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.55119 * 2 1 4 4 C 1.53737 * 109.43933 * 120.27495 * 2 1 3 5 5 N 1.47165 * 108.28399 * 172.90346 * 4 2 1 6 6 C 1.34782 * 121.04962 * 128.88790 * 5 4 2 7 7 O 1.21582 * 119.99394 * 175.60473 * 6 5 4 8 8 C 1.47638 * 120.00328 * 355.61187 * 6 5 4 9 9 C 1.40011 * 119.89434 * 220.43480 * 8 6 5 10 10 C 1.36316 * 120.10632 * 180.02562 * 9 8 6 11 11 C 1.40888 * 119.89178 * 0.24501 * 10 9 8 12 12 C 1.41111 * 120.10429 * 179.70386 * 11 10 9 13 13 H 1.08004 * 119.99745 * 27.75742 * 12 11 10 14 14 C 1.40227 * 119.99975 * 207.76131 * 12 11 10 15 15 N 1.30641 * 120.00064 * 14.09350 * 14 12 11 16 16 Si 1.86800 * 119.99595 * 194.09262 * 14 12 11 17 17 H 1.48498 * 109.47511 * 60.00238 * 16 14 12 18 18 H 1.48508 * 109.46750 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47646 * 299.99552 * 16 14 12 20 20 C 1.40892 * 119.79144 * 359.43633 * 11 10 9 21 21 C 1.36310 * 119.89043 * 0.59021 * 20 11 10 22 22 C 1.47284 * 117.89359 * 308.61609 * 5 4 2 23 23 C 1.52646 * 108.38175 * 49.84308 * 22 5 4 24 24 C 1.53978 * 110.14007 * 71.74597 * 23 22 5 25 25 C 1.54616 * 103.87128 * 118.23149 * 24 23 22 26 26 O 1.44469 * 104.82151 * 23.89935 * 25 24 23 27 27 C 1.44558 * 105.37003 * 319.84213 * 26 25 24 28 28 O 1.42212 * 110.84096 * 309.26969 * 23 22 5 29 29 H 1.09005 * 109.47125 * 180.13073 * 1 2 3 30 30 H 1.09001 * 109.46868 * 300.12417 * 1 2 3 31 31 H 1.08999 * 109.47462 * 60.12636 * 1 2 3 32 32 H 1.09003 * 109.80093 * 53.23812 * 4 2 1 33 33 H 1.09001 * 109.69963 * 292.51273 * 4 2 1 34 34 H 1.07997 * 119.94805 * 359.97438 * 9 8 6 35 35 H 1.08001 * 120.05272 * 179.97438 * 10 9 8 36 36 H 0.97005 * 120.00059 * 180.02562 * 15 14 12 37 37 H 1.08005 * 120.04989 * 180.28988 * 20 11 10 38 38 H 1.07999 * 119.94557 * 179.72714 * 21 20 11 39 39 H 1.09002 * 109.67772 * 169.56471 * 22 5 4 40 40 H 1.08997 * 109.68231 * 290.11557 * 22 5 4 41 41 H 1.08997 * 110.54678 * 236.82920 * 24 23 22 42 42 H 1.09005 * 110.54771 * 359.64204 * 24 23 22 43 43 H 1.08999 * 110.36286 * 142.73006 * 25 24 23 44 44 H 1.08998 * 110.37283 * 265.05843 * 25 24 23 45 45 H 1.08994 * 110.39664 * 281.17620 * 27 26 25 46 46 H 1.09005 * 110.39223 * 158.78685 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0417 -0.7309 1.2520 5 7 3.5029 -0.8668 1.1424 6 6 4.3142 -0.4830 2.1480 7 8 5.5119 -0.6771 2.0705 8 6 3.7484 0.1730 3.3435 9 6 4.4193 1.2528 3.9303 10 6 3.9011 1.8614 5.0345 11 6 2.6911 1.3987 5.5884 12 6 2.1538 2.0213 6.7351 13 1 2.3655 3.0616 6.9340 14 6 1.3452 1.2894 7.6165 15 7 1.3087 -0.0143 7.5397 16 14 0.3202 2.1785 8.9003 17 1 -0.6282 3.1004 8.2250 18 1 -0.4407 1.1856 9.7006 19 1 1.2139 2.9563 9.7956 20 6 2.0162 0.3161 4.9905 21 6 2.5425 -0.2864 3.8868 22 6 4.0504 -1.4412 -0.0984 23 6 3.4247 -0.7110 -1.2839 24 6 3.9896 0.7179 -1.3845 25 6 4.6912 0.7430 -2.7621 26 8 4.0382 -0.2932 -3.5283 27 6 3.8398 -1.3863 -2.6034 28 8 2.0078 -0.6769 -1.1665 29 1 -0.3634 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.5857 -1.7190 1.3149 33 1 1.7934 -0.1528 2.1421 34 1 5.3492 1.6037 3.5078 35 1 4.4195 2.6940 5.4866 36 1 0.7490 -0.5206 8.1491 37 1 1.0860 -0.0390 5.4089 38 1 2.0282 -1.1192 3.4303 39 1 5.1325 -1.3113 -0.1167 40 1 3.8066 -2.5023 -0.1505 41 1 3.1836 1.4510 -1.3522 42 1 4.7082 0.9024 -0.5859 43 1 4.5531 1.7126 -3.2404 44 1 5.7526 0.5213 -2.6514 45 1 4.7668 -1.9437 -2.4695 46 1 3.0474 -2.0452 -2.9585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280624470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:24 Heat of formation + Delta-G solvation = -107.290984 kcal Electronic energy + Delta-G solvation = -29341.146670 eV Core-core repulsion = 25388.203750 eV Total energy + Delta-G solvation = -3952.942920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.09885 -40.54742 -39.01733 -38.68307 -35.94163 -35.59706 -34.35625 -32.16123 -31.72280 -31.40539 -30.27956 -28.17089 -27.59528 -26.33529 -24.12341 -23.39495 -23.24938 -22.67253 -21.14285 -20.22337 -19.34356 -18.34853 -18.24179 -17.59328 -17.35221 -17.05976 -16.68007 -16.23637 -16.11740 -15.82393 -15.54300 -15.22070 -15.06415 -14.97974 -14.51044 -14.16997 -14.06858 -13.80438 -13.70673 -13.47518 -13.32127 -13.19198 -13.02822 -12.82870 -12.67650 -12.52813 -12.48098 -12.37545 -12.35266 -12.04333 -11.80448 -11.72978 -11.35933 -11.17085 -11.11577 -10.83381 -10.66142 -9.65179 -9.52558 -9.33769 -8.74918 -6.48178 0.48938 1.08514 1.40164 1.44484 1.52426 1.82329 1.99290 2.17889 2.41308 2.68838 2.88002 3.37489 3.51501 3.60484 3.72260 3.76053 3.84639 3.94600 4.06463 4.16964 4.28205 4.30089 4.34265 4.38008 4.43367 4.52402 4.54860 4.64692 4.71197 4.72640 4.77281 4.88560 4.91335 4.92372 5.01201 5.03986 5.13232 5.26585 5.27874 5.39810 5.58345 5.66371 5.75637 5.93063 5.98161 6.12626 6.21862 6.34493 6.54286 6.79094 6.87521 7.20184 8.20608 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.003069 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.171609 B = 9120.684471 C = 9678.669447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.057 0.943 4 C 0.061 3.939 5 N -0.611 5.611 6 C 0.579 3.421 7 O -0.595 6.595 8 C -0.282 4.282 9 C -0.039 4.039 10 C -0.245 4.245 11 C 0.103 3.897 12 C -0.480 4.480 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.808 5.808 16 Si 0.986 3.014 17 H -0.256 1.256 18 H -0.267 1.267 19 H -0.261 1.261 20 C -0.186 4.186 21 C -0.063 4.063 22 C 0.094 3.906 23 C 0.078 3.922 24 C -0.177 4.177 25 C 0.050 3.950 26 O -0.385 6.385 27 C 0.065 3.935 28 O -0.365 6.365 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.295 0.705 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -1.387 -14.068 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.075 0.925 4 C -0.061 4.061 5 N -0.343 5.343 6 C 0.373 3.627 7 O -0.478 6.478 8 C -0.286 4.286 9 C -0.058 4.058 10 C -0.264 4.264 11 C 0.100 3.900 12 C -0.507 4.507 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.432 5.432 16 Si 0.806 3.194 17 H -0.180 1.180 18 H -0.191 1.191 19 H -0.186 1.186 20 C -0.205 4.205 21 C -0.082 4.082 22 C -0.028 4.028 23 C 0.037 3.963 24 C -0.215 4.215 25 C -0.026 4.026 26 O -0.304 6.304 27 C -0.012 4.012 28 O -0.284 6.284 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.981 -1.795 -14.367 14.782 hybrid contribution 0.152 0.406 1.370 1.437 sum -2.829 -1.389 -12.997 13.374 Atomic orbital electron populations 1.21723 0.90149 1.03958 1.03675 1.22697 0.96860 0.94989 0.83828 0.92528 1.23275 0.79017 1.02764 1.01078 1.48019 1.07412 1.62987 1.15909 1.18568 0.85117 0.76198 0.82794 1.90631 1.16924 1.58531 1.81690 1.19053 1.01729 1.05807 1.02043 1.20397 0.96813 0.94192 0.94367 1.20859 0.98509 1.05854 1.01198 1.18092 0.89603 0.90960 0.91337 1.20038 1.26227 0.98771 1.05702 0.89762 1.26860 0.95669 0.95234 1.00187 1.69747 1.31017 1.08113 1.34287 0.85180 0.78264 0.78860 0.77088 1.17994 1.19075 1.18559 1.20990 1.01646 1.01080 0.96804 1.20794 0.93576 0.98273 0.95544 1.22186 0.99960 0.98128 0.82574 1.22779 0.82357 0.95184 0.95998 1.23467 1.01374 0.97440 0.99266 1.23497 0.96557 0.92962 0.89607 1.89153 1.80216 1.26923 1.34100 1.23390 1.02460 0.89956 0.85411 1.87859 1.19354 1.77573 1.43648 0.90786 0.89727 0.90825 0.89517 0.86899 0.88129 0.87742 0.89395 0.86874 0.85840 0.89004 0.89448 0.90173 0.91262 0.87503 0.90754 0.88535 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.57 71.98 0.69 -1.94 16 2 C 0.07 1.81 3.13 30.84 0.10 1.91 16 3 H 0.06 1.50 6.50 -2.39 -0.02 1.48 16 4 C 0.06 1.69 4.48 86.50 0.39 2.08 16 5 N -0.61 -19.74 2.90 -820.99 -2.38 -22.12 16 6 C 0.58 23.77 7.36 86.72 0.64 24.41 16 7 O -0.59 -27.61 16.43 -3.97 -0.07 -27.68 16 8 C -0.28 -12.43 5.38 -19.93 -0.11 -12.54 16 9 C -0.04 -1.77 9.56 22.25 0.21 -1.56 16 10 C -0.24 -11.71 9.73 22.47 0.22 -11.49 16 11 C 0.10 5.19 5.55 -21.28 -0.12 5.07 16 12 C -0.48 -23.71 9.05 23.46 0.21 -23.50 16 13 H 0.08 3.98 7.89 -2.91 -0.02 3.96 16 14 C 0.04 1.76 5.19 85.35 0.44 2.21 16 15 N -0.81 -38.47 10.96 21.87 0.24 -38.23 16 16 Si 0.99 34.43 29.58 68.60 2.03 36.46 16 17 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 18 H -0.27 -8.81 7.11 99.48 0.71 -8.11 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 20 C -0.19 -8.87 8.60 22.47 0.19 -8.67 16 21 C -0.06 -2.70 7.27 22.25 0.16 -2.53 16 22 C 0.09 2.51 4.95 86.11 0.43 2.94 16 23 C 0.08 1.84 1.05 -10.27 -0.01 1.82 16 24 C -0.18 -4.24 5.77 31.47 0.18 -4.06 16 25 C 0.05 1.00 7.65 72.53 0.55 1.56 16 26 O -0.39 -8.81 11.65 -148.98 -1.74 -10.55 16 27 C 0.06 1.27 6.93 72.30 0.50 1.77 16 28 O -0.37 -9.12 9.84 -148.98 -1.47 -10.58 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 3.52 4.08 -2.39 -0.01 3.51 16 34 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 36 H 0.29 12.61 8.29 -92.70 -0.77 11.84 16 37 H 0.11 5.51 6.27 -2.91 -0.02 5.49 16 38 H 0.12 4.54 6.01 -2.91 -0.02 4.52 16 39 H 0.09 2.64 7.05 -2.39 -0.02 2.62 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 1.97 6.63 -2.39 -0.02 1.95 16 42 H 0.07 1.90 7.67 -2.38 -0.02 1.88 16 43 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 1.53 7.84 -2.39 -0.02 1.51 16 46 H 0.11 2.03 8.08 -2.38 -0.02 2.01 16 Total: -1.00 -60.71 363.31 2.30 -58.41 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 1.00 Total: 36.82 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.68 Total: -22.53 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -2.14 Total: -60.35 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -3.27 Total: -48.81 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Total: -60.71 2.30 -58.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280624470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.880 kcal (2) G-P(sol) polarization free energy of solvation -60.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds