Wall clock time and date at job start Tue Mar 31 2020 17:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.50815 * 2 1 4 4 C 1.53279 * 109.50736 * 239.90498 * 2 1 3 5 5 N 1.47171 * 108.54492 * 187.12719 * 4 2 1 6 6 C 1.34783 * 121.06879 * 230.90350 * 5 4 2 7 7 O 1.21543 * 120.00102 * 174.19900 * 6 5 4 8 8 C 1.47883 * 119.99452 * 354.20035 * 6 5 4 9 9 C 1.39916 * 120.02963 * 327.57637 * 8 6 5 10 10 C 1.38334 * 120.36347 * 180.02562 * 9 8 6 11 11 C 1.37750 * 120.40561 * 359.97438 * 10 9 8 12 12 C 1.40749 * 120.04360 * 359.97438 * 11 10 9 13 13 C 1.41438 * 120.17732 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00158 * 25.05610 * 13 12 11 15 15 C 1.39932 * 120.00312 * 205.05172 * 13 12 11 16 16 N 1.30833 * 119.99550 * 17.11160 * 15 13 12 17 17 Si 1.86796 * 120.00623 * 197.11524 * 15 13 12 18 18 H 1.48503 * 109.46777 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47329 * 119.99653 * 17 15 13 20 20 H 1.48506 * 109.47042 * 240.00356 * 17 15 13 21 21 C 1.38999 * 120.02630 * 147.30218 * 8 6 5 22 22 C 1.47323 * 117.86365 * 51.17108 * 5 4 2 23 23 C 1.52442 * 108.40323 * 310.71528 * 22 5 4 24 24 C 1.54581 * 110.15447 * 173.10982 * 23 22 5 25 25 C 1.55071 * 100.87695 * 151.45632 * 24 23 22 26 26 O 1.43721 * 105.21207 * 324.24493 * 25 24 23 27 27 C 1.43427 * 109.93349 * 24.30365 * 26 25 24 28 28 O 1.41979 * 111.28213 * 50.24292 * 23 22 5 29 29 H 1.08995 * 109.47100 * 180.09263 * 1 2 3 30 30 H 1.09004 * 109.46717 * 300.10005 * 1 2 3 31 31 H 1.08997 * 109.46700 * 60.09738 * 1 2 3 32 32 H 1.08992 * 109.62811 * 67.40683 * 4 2 1 33 33 H 1.08998 * 109.77838 * 306.92737 * 4 2 1 34 34 H 1.08003 * 119.81853 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.79246 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.97726 * 180.02562 * 11 10 9 37 37 H 0.97005 * 119.99863 * 179.97438 * 16 15 13 38 38 H 1.08008 * 120.19640 * 0.02562 * 21 8 6 39 39 H 1.08999 * 109.67476 * 70.44870 * 22 5 4 40 40 H 1.09002 * 109.67585 * 190.98640 * 22 5 4 41 41 H 1.09002 * 111.13635 * 269.35626 * 24 23 22 42 42 H 1.08999 * 111.13775 * 33.54956 * 24 23 22 43 43 H 1.08999 * 110.29681 * 205.30829 * 25 24 23 44 44 H 1.08997 * 110.29212 * 83.17501 * 25 24 23 45 45 H 1.09005 * 109.85586 * 238.34849 * 27 26 25 46 46 H 1.08999 * 109.86365 * 117.26050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5032 -0.8637 -1.1450 6 6 4.3126 -0.4815 -2.1527 7 8 5.5189 -0.5062 -2.0060 8 6 3.7328 -0.0321 -3.4368 9 6 2.5322 -0.5857 -3.8947 10 6 1.9839 -0.1708 -5.0951 11 6 2.6130 0.7921 -5.8531 12 6 3.8210 1.3612 -5.4082 13 6 4.4691 2.3504 -6.1840 14 1 3.8982 2.9585 -6.8701 15 6 5.8500 2.5414 -6.0625 16 7 6.5917 1.6178 -5.5073 17 14 6.6344 4.1151 -6.6930 18 1 5.5863 4.9923 -7.2739 19 1 7.3032 4.8194 -5.5698 20 1 7.6371 3.7845 -7.7374 21 6 4.3772 0.9446 -4.1870 22 6 4.0527 -1.4397 0.0947 23 6 3.4225 -0.7189 1.2809 24 6 3.8379 -1.4044 2.6026 25 6 3.7764 -0.2066 3.5855 26 8 4.2219 0.9286 2.8249 27 6 4.0045 0.6959 1.4264 28 8 2.0079 -0.6773 1.1664 29 1 -0.3633 -1.0276 0.0017 30 1 -0.3633 0.5154 0.8891 31 1 -0.3632 0.5123 -0.8909 32 1 1.7924 -0.1435 -2.1378 33 1 1.5842 -1.7114 -1.3177 34 1 2.0307 -1.3410 -3.3078 35 1 1.0570 -0.6046 -5.4401 36 1 2.1786 1.1111 -6.7891 37 1 7.5490 1.7500 -5.4234 38 1 5.3021 1.3775 -3.8354 39 1 3.8149 -2.5024 0.1423 40 1 5.1340 -1.3038 0.1148 41 1 3.1258 -2.1804 2.8837 42 1 4.8487 -1.8068 2.5360 43 1 4.4404 -0.3782 4.4327 44 1 2.7540 -0.0527 3.9305 45 1 4.9500 0.7645 0.8883 46 1 3.2993 1.4287 1.0343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280704839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:38 Heat of formation + Delta-G solvation = -87.926211 kcal Electronic energy + Delta-G solvation = -29557.797302 eV Core-core repulsion = 25605.694101 eV Total energy + Delta-G solvation = -3952.103200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00729 -39.17147 -37.67765 -37.03781 -34.63340 -33.82201 -33.43608 -30.75998 -30.49123 -29.56438 -29.14034 -26.76667 -25.81682 -25.32264 -23.19183 -22.12500 -21.81681 -21.05594 -19.95489 -18.91690 -17.66177 -17.49571 -16.45243 -16.22850 -16.07232 -15.45550 -15.22649 -15.05576 -14.84442 -14.61563 -14.29627 -14.06542 -13.61858 -13.37407 -13.10232 -12.90849 -12.86537 -12.69731 -12.47703 -12.28475 -12.00800 -11.77806 -11.76721 -11.69156 -11.41069 -11.24107 -11.18154 -11.06703 -10.78072 -10.68181 -10.38015 -10.14400 -9.96713 -9.73487 -9.63299 -9.29903 -9.02944 -8.33202 -7.68423 -7.56651 -6.84706 -4.47732 2.18193 2.73072 3.04439 3.07826 3.10018 3.12912 3.35805 3.62600 3.72774 3.87400 4.26326 4.47370 4.51278 4.60465 4.81339 4.93112 4.99928 5.04046 5.14916 5.25328 5.35832 5.46014 5.48975 5.50399 5.54780 5.66758 5.68739 5.69897 5.72765 5.82199 5.87782 5.93016 6.03704 6.08095 6.23913 6.57849 6.69857 6.82478 6.91907 6.95878 7.08695 7.14029 7.30783 7.55901 7.68503 7.78376 7.90873 8.09401 8.43210 8.71325 8.74947 8.77811 10.09355 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.003654 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.587317 B = 7661.180560 C = 8622.023251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.066 3.934 3 H 0.067 0.933 4 C 0.067 3.933 5 N -0.621 5.621 6 C 0.569 3.431 7 O -0.537 6.537 8 C -0.123 4.123 9 C -0.230 4.230 10 C -0.095 4.095 11 C -0.212 4.212 12 C 0.102 3.898 13 C -0.459 4.459 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.780 5.780 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.097 4.097 22 C 0.098 3.902 23 C 0.077 3.923 24 C -0.140 4.140 25 C 0.054 3.946 26 O -0.381 6.381 27 C 0.032 3.968 28 O -0.361 6.361 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.285 0.715 38 H 0.129 0.871 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -4.369 12.978 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.008 3.992 3 H 0.085 0.915 4 C -0.056 4.056 5 N -0.356 5.356 6 C 0.362 3.638 7 O -0.414 6.414 8 C -0.126 4.126 9 C -0.250 4.250 10 C -0.113 4.113 11 C -0.232 4.232 12 C 0.100 3.900 13 C -0.488 4.488 14 H 0.100 0.900 15 C -0.147 4.147 16 N -0.404 5.404 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.117 4.117 22 C -0.026 4.026 23 C 0.036 3.964 24 C -0.178 4.178 25 C -0.022 4.022 26 O -0.300 6.300 27 C -0.045 4.045 28 O -0.281 6.281 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.102 0.898 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.361 -4.333 13.299 15.806 hybrid contribution 0.448 0.376 -0.618 0.851 sum -6.912 -3.958 12.681 14.975 Atomic orbital electron populations 1.21700 0.91943 1.03136 1.02973 1.22695 0.95589 0.96002 0.84880 0.91513 1.23073 0.80210 1.01973 1.00337 1.48098 1.06859 1.64488 1.16190 1.19025 0.85873 0.75302 0.83620 1.90715 1.14578 1.53937 1.82203 1.19377 0.97152 1.01984 0.94106 1.20586 0.97864 1.06575 0.99962 1.20457 0.98368 0.97835 0.94687 1.21111 1.00183 1.01681 1.00212 1.17577 0.90932 0.90891 0.90643 1.19636 0.92414 1.16001 1.20719 0.89986 1.25985 0.97734 0.97253 0.93726 1.69812 1.07421 1.31142 1.32070 0.86241 0.79473 0.81719 0.79253 1.18291 1.19556 1.19846 1.21536 0.99663 0.97143 0.93393 1.21950 1.00594 0.97140 0.82889 1.22657 0.82744 0.95118 0.95895 1.23179 1.03060 0.98993 0.92569 1.23386 0.99979 0.84369 0.94500 1.88458 1.84603 1.40025 1.16953 1.23708 1.01526 0.96267 0.83014 1.87781 1.18860 1.77628 1.43802 0.91612 0.91654 0.90280 0.85400 0.91104 0.88147 0.88797 0.88580 0.90407 0.85340 0.90844 0.87882 0.88572 0.88643 0.89615 0.91801 0.89808 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 37.16 0.36 -1.00 16 2 C 0.07 0.83 3.17 -26.58 -0.08 0.74 16 3 H 0.07 0.90 6.27 -51.93 -0.33 0.58 16 4 C 0.07 0.94 4.16 -3.53 -0.01 0.93 16 5 N -0.62 -10.46 2.95 -173.75 -0.51 -10.98 16 6 C 0.57 12.27 7.43 -12.31 -0.09 12.18 16 7 O -0.54 -13.26 16.25 5.33 0.09 -13.18 16 8 C -0.12 -2.82 5.37 -105.04 -0.56 -3.38 16 9 C -0.23 -4.64 7.40 -38.92 -0.29 -4.93 16 10 C -0.10 -1.94 10.01 -39.72 -0.40 -2.33 16 11 C -0.21 -4.85 9.78 -38.81 -0.38 -5.23 16 12 C 0.10 2.62 5.56 -106.87 -0.59 2.02 16 13 C -0.46 -11.77 9.05 -37.73 -0.34 -12.11 16 14 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 15 C 0.07 1.80 5.15 -17.34 -0.09 1.71 16 16 N -0.78 -20.47 10.96 55.55 0.61 -19.86 16 17 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 C -0.10 -2.51 8.24 -38.44 -0.32 -2.83 16 22 C 0.10 1.40 5.22 -3.88 -0.02 1.38 16 23 C 0.08 0.98 0.81 -89.72 -0.07 0.91 16 24 C -0.14 -1.39 6.30 -24.81 -0.16 -1.55 16 25 C 0.05 0.57 7.79 38.25 0.30 0.87 16 26 O -0.38 -5.44 11.37 -35.23 -0.40 -5.84 16 27 C 0.03 0.46 6.91 37.51 0.26 0.71 16 28 O -0.36 -4.69 9.91 -35.23 -0.35 -5.04 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 1.95 4.55 -51.93 -0.24 1.72 16 33 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 34 H 0.10 1.74 5.68 -52.48 -0.30 1.44 16 35 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.28 6.86 8.30 -40.82 -0.34 6.53 16 38 H 0.13 3.61 6.09 -52.48 -0.32 3.29 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.60 6.81 -51.93 -0.35 1.25 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.84 8.00 -51.93 -0.42 0.42 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.33 7.60 -51.93 -0.39 0.93 16 46 H 0.07 1.11 6.06 -51.93 -0.31 0.80 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -29.81 362.58 -9.06 -38.87 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.42 Total: 9.04 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.50 Total: -11.90 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.10 Total: -30.83 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.66 Total: -24.05 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.81 -9.06 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280704839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.057 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds