Wall clock time and date at job start Tue Mar 31 2020 17:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.50815 * 2 1 4 4 C 1.53279 * 109.50736 * 239.90498 * 2 1 3 5 5 N 1.47171 * 108.54492 * 187.12719 * 4 2 1 6 6 C 1.34783 * 121.06879 * 230.90350 * 5 4 2 7 7 O 1.21543 * 120.00102 * 174.19900 * 6 5 4 8 8 C 1.47883 * 119.99452 * 354.20035 * 6 5 4 9 9 C 1.39916 * 120.02963 * 327.57637 * 8 6 5 10 10 C 1.38334 * 120.36347 * 180.02562 * 9 8 6 11 11 C 1.37750 * 120.40561 * 359.97438 * 10 9 8 12 12 C 1.40749 * 120.04360 * 359.97438 * 11 10 9 13 13 C 1.41438 * 120.17732 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00158 * 25.05610 * 13 12 11 15 15 C 1.39932 * 120.00312 * 205.05172 * 13 12 11 16 16 N 1.30833 * 119.99550 * 17.11160 * 15 13 12 17 17 Si 1.86796 * 120.00623 * 197.11524 * 15 13 12 18 18 H 1.48503 * 109.46777 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47329 * 119.99653 * 17 15 13 20 20 H 1.48506 * 109.47042 * 240.00356 * 17 15 13 21 21 C 1.38999 * 120.02630 * 147.30218 * 8 6 5 22 22 C 1.47323 * 117.86365 * 51.17108 * 5 4 2 23 23 C 1.52442 * 108.40323 * 310.71528 * 22 5 4 24 24 C 1.54581 * 110.15447 * 173.10982 * 23 22 5 25 25 C 1.55071 * 100.87695 * 151.45632 * 24 23 22 26 26 O 1.43721 * 105.21207 * 324.24493 * 25 24 23 27 27 C 1.43427 * 109.93349 * 24.30365 * 26 25 24 28 28 O 1.41979 * 111.28213 * 50.24292 * 23 22 5 29 29 H 1.08995 * 109.47100 * 180.09263 * 1 2 3 30 30 H 1.09004 * 109.46717 * 300.10005 * 1 2 3 31 31 H 1.08997 * 109.46700 * 60.09738 * 1 2 3 32 32 H 1.08992 * 109.62811 * 67.40683 * 4 2 1 33 33 H 1.08998 * 109.77838 * 306.92737 * 4 2 1 34 34 H 1.08003 * 119.81853 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.79246 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.97726 * 180.02562 * 11 10 9 37 37 H 0.97005 * 119.99863 * 179.97438 * 16 15 13 38 38 H 1.08008 * 120.19640 * 0.02562 * 21 8 6 39 39 H 1.08999 * 109.67476 * 70.44870 * 22 5 4 40 40 H 1.09002 * 109.67585 * 190.98640 * 22 5 4 41 41 H 1.09002 * 111.13635 * 269.35626 * 24 23 22 42 42 H 1.08999 * 111.13775 * 33.54956 * 24 23 22 43 43 H 1.08999 * 110.29681 * 205.30829 * 25 24 23 44 44 H 1.08997 * 110.29212 * 83.17501 * 25 24 23 45 45 H 1.09005 * 109.85586 * 238.34849 * 27 26 25 46 46 H 1.08999 * 109.86365 * 117.26050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5032 -0.8637 -1.1450 6 6 4.3126 -0.4815 -2.1527 7 8 5.5189 -0.5062 -2.0060 8 6 3.7328 -0.0321 -3.4368 9 6 2.5322 -0.5857 -3.8947 10 6 1.9839 -0.1708 -5.0951 11 6 2.6130 0.7921 -5.8531 12 6 3.8210 1.3612 -5.4082 13 6 4.4691 2.3504 -6.1840 14 1 3.8982 2.9585 -6.8701 15 6 5.8500 2.5414 -6.0625 16 7 6.5917 1.6178 -5.5073 17 14 6.6344 4.1151 -6.6930 18 1 5.5863 4.9923 -7.2739 19 1 7.3032 4.8194 -5.5698 20 1 7.6371 3.7845 -7.7374 21 6 4.3772 0.9446 -4.1870 22 6 4.0527 -1.4397 0.0947 23 6 3.4225 -0.7189 1.2809 24 6 3.8379 -1.4044 2.6026 25 6 3.7764 -0.2066 3.5855 26 8 4.2219 0.9286 2.8249 27 6 4.0045 0.6959 1.4264 28 8 2.0079 -0.6773 1.1664 29 1 -0.3633 -1.0276 0.0017 30 1 -0.3633 0.5154 0.8891 31 1 -0.3632 0.5123 -0.8909 32 1 1.7924 -0.1435 -2.1378 33 1 1.5842 -1.7114 -1.3177 34 1 2.0307 -1.3410 -3.3078 35 1 1.0570 -0.6046 -5.4401 36 1 2.1786 1.1111 -6.7891 37 1 7.5490 1.7500 -5.4234 38 1 5.3021 1.3775 -3.8354 39 1 3.8149 -2.5024 0.1423 40 1 5.1340 -1.3038 0.1148 41 1 3.1258 -2.1804 2.8837 42 1 4.8487 -1.8068 2.5360 43 1 4.4404 -0.3782 4.4327 44 1 2.7540 -0.0527 3.9305 45 1 4.9500 0.7645 0.8883 46 1 3.2993 1.4287 1.0343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280704839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:37 Heat of formation + Delta-G solvation = -106.643317 kcal Electronic energy + Delta-G solvation = -29558.608936 eV Core-core repulsion = 25605.694101 eV Total energy + Delta-G solvation = -3952.914835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.19647 -40.64220 -38.94885 -38.67433 -36.10153 -35.49149 -34.55148 -32.19240 -31.67440 -31.32384 -30.29873 -27.99251 -27.19493 -27.00381 -24.26928 -23.61647 -22.94573 -22.64027 -21.24179 -20.37727 -19.35938 -18.55916 -17.81728 -17.63479 -17.46414 -16.78087 -16.72522 -16.32368 -16.29103 -16.03031 -15.50192 -15.31683 -15.02923 -14.82929 -14.56835 -14.32367 -14.23805 -14.03615 -13.60784 -13.53872 -13.26578 -13.15623 -12.86069 -12.71750 -12.67417 -12.65034 -12.56645 -12.33730 -12.16890 -12.15582 -11.96836 -11.72316 -11.48357 -11.12005 -11.11148 -10.72337 -10.65088 -9.72881 -9.42199 -9.38228 -8.67808 -6.40380 0.40366 0.96825 1.35026 1.44013 1.51069 1.73756 1.94434 2.16987 2.36192 2.70858 2.74034 3.23149 3.42180 3.56799 3.62900 3.68110 3.82270 3.93599 4.06264 4.16234 4.26319 4.30481 4.37000 4.43602 4.48770 4.49940 4.56922 4.60162 4.73604 4.77463 4.85496 4.87569 4.88166 4.99590 5.03380 5.06032 5.16974 5.25772 5.30039 5.36976 5.49813 5.80495 5.83313 5.92163 6.01502 6.04796 6.20055 6.29158 6.57955 6.86029 6.92121 7.09579 8.28314 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.003654 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.587317 B = 7661.180560 C = 8622.023251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.067 3.933 3 H 0.049 0.951 4 C 0.062 3.938 5 N -0.611 5.611 6 C 0.564 3.436 7 O -0.583 6.583 8 C -0.133 4.133 9 C -0.204 4.204 10 C -0.091 4.091 11 C -0.215 4.215 12 C 0.072 3.928 13 C -0.496 4.496 14 H 0.085 0.915 15 C 0.029 3.971 16 N -0.826 5.826 17 Si 0.981 3.019 18 H -0.249 1.249 19 H -0.271 1.271 20 H -0.265 1.265 21 C -0.133 4.133 22 C 0.095 3.905 23 C 0.081 3.919 24 C -0.130 4.130 25 C 0.047 3.953 26 O -0.402 6.402 27 C 0.032 3.968 28 O -0.356 6.356 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 -6.060 14.162 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.067 0.933 4 C -0.059 4.059 5 N -0.344 5.344 6 C 0.356 3.644 7 O -0.464 6.464 8 C -0.136 4.136 9 C -0.223 4.223 10 C -0.108 4.108 11 C -0.235 4.235 12 C 0.069 3.931 13 C -0.525 4.525 14 H 0.103 0.897 15 C -0.185 4.185 16 N -0.452 5.452 17 Si 0.801 3.199 18 H -0.172 1.172 19 H -0.196 1.196 20 H -0.190 1.190 21 C -0.154 4.154 22 C -0.028 4.028 23 C 0.040 3.960 24 C -0.168 4.168 25 C -0.029 4.029 26 O -0.322 6.322 27 C -0.045 4.045 28 O -0.275 6.275 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.466 -6.043 14.514 18.887 hybrid contribution 1.214 0.776 -0.843 1.669 sum -9.252 -5.267 13.671 17.327 Atomic orbital electron populations 1.21709 0.89158 1.04351 1.03875 1.22750 0.97586 0.94758 0.84040 0.93311 1.23285 0.78234 1.03518 1.00885 1.48092 1.07876 1.62738 1.15709 1.18936 0.85618 0.75499 0.84390 1.90685 1.16546 1.56132 1.83065 1.19652 0.97997 1.01282 0.94682 1.21042 0.96036 1.05539 0.99726 1.20936 0.99556 0.96450 0.93899 1.21418 0.99178 1.01868 1.01045 1.17907 0.92456 0.91872 0.90836 1.19906 0.93297 1.17359 1.21961 0.89672 1.26855 0.97992 1.00120 0.93570 1.69922 1.07608 1.33317 1.34345 0.85174 0.78603 0.77493 0.78589 1.17223 1.19640 1.19003 1.21317 0.99659 0.99585 0.94820 1.22166 0.99809 0.98618 0.82175 1.22636 0.82667 0.94016 0.96673 1.23240 1.04367 0.99057 0.90119 1.23668 1.01010 0.83367 0.94845 1.88439 1.84958 1.42059 1.16748 1.23572 1.00026 0.97504 0.83357 1.87807 1.18504 1.77376 1.43816 0.90163 0.91021 0.89226 0.86482 0.88223 0.84213 0.84070 0.87252 0.90395 0.89033 0.88129 0.89710 0.86147 0.87492 0.87226 0.91075 0.92450 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.57 71.98 0.69 -1.41 16 2 C 0.07 1.51 3.17 30.69 0.10 1.61 16 3 H 0.05 1.30 6.27 -2.39 -0.01 1.28 16 4 C 0.06 1.58 4.16 86.34 0.36 1.94 16 5 N -0.61 -20.11 2.95 -821.90 -2.43 -22.53 16 6 C 0.56 25.00 7.43 86.80 0.64 25.64 16 7 O -0.58 -30.61 16.25 -3.85 -0.06 -30.67 16 8 C -0.13 -6.20 5.37 -20.13 -0.11 -6.31 16 9 C -0.20 -7.76 7.40 22.70 0.17 -7.59 16 10 C -0.09 -3.41 10.01 22.18 0.22 -3.19 16 11 C -0.22 -9.73 9.78 22.77 0.22 -9.50 16 12 C 0.07 3.82 5.56 -21.32 -0.12 3.70 16 13 C -0.50 -26.69 9.05 23.47 0.21 -26.47 16 14 H 0.09 4.31 7.90 -2.91 -0.02 4.29 16 15 C 0.03 1.54 5.15 85.25 0.44 1.97 16 16 N -0.83 -46.49 10.96 21.82 0.24 -46.25 16 17 Si 0.98 39.56 29.59 68.60 2.03 41.59 16 18 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 21 C -0.13 -7.30 8.24 23.01 0.19 -7.11 16 22 C 0.09 2.61 5.22 86.04 0.45 3.06 16 23 C 0.08 1.95 0.81 -10.21 -0.01 1.94 16 24 C -0.13 -2.21 6.30 31.84 0.20 -2.01 16 25 C 0.05 0.87 7.79 72.69 0.57 1.44 16 26 O -0.40 -11.35 11.37 -148.98 -1.69 -13.05 16 27 C 0.03 0.96 6.91 72.21 0.50 1.46 16 28 O -0.36 -8.22 9.91 -148.97 -1.48 -9.69 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 3.26 4.55 -2.39 -0.01 3.25 16 33 H 0.10 2.05 7.94 -2.39 -0.02 2.03 16 34 H 0.14 4.20 5.68 -2.91 -0.02 4.18 16 35 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.29 14.85 8.30 -92.70 -0.77 14.08 16 38 H 0.09 5.64 6.09 -2.91 -0.02 5.62 16 39 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.08 2.70 6.81 -2.39 -0.02 2.68 16 41 H 0.12 1.51 8.14 -2.39 -0.02 1.50 16 42 H 0.11 1.59 8.00 -2.39 -0.02 1.57 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.97 7.60 -2.38 -0.02 1.95 16 46 H 0.06 1.95 6.06 -2.39 -0.01 1.94 16 Total: -1.00 -70.98 362.58 2.33 -68.65 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 1.00 Total: 32.78 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 4.72 Total: -20.82 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -2.19 Total: -68.78 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -3.23 Total: -53.42 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -70.98 2.33 -68.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280704839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.990 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds