Wall clock time and date at job start Tue Mar 31 2020 16:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47037 * 216.04112 * 3 2 1 5 5 C 1.36895 * 120.00055 * 83.23075 * 4 3 2 6 6 H 1.08008 * 119.99934 * 169.29540 * 5 4 3 7 7 C 1.39024 * 120.00091 * 349.28836 * 5 4 3 8 8 N 1.31381 * 119.99597 * 3.55030 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 183.54839 * 7 5 4 10 10 H 1.48503 * 109.47325 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46837 * 120.00293 * 9 7 5 12 12 H 1.48503 * 109.47325 * 240.00174 * 9 7 5 13 13 C 1.34783 * 119.99979 * 263.22924 * 4 3 2 14 14 O 1.21622 * 120.00044 * 182.38387 * 13 4 3 15 15 C 1.47501 * 119.99800 * 2.38845 * 13 4 3 16 16 C 1.39762 * 120.07775 * 42.89402 * 15 13 4 17 17 C 1.37777 * 119.99728 * 179.97438 * 16 15 13 18 18 C 1.38844 * 120.15692 * 0.02562 * 17 16 15 19 19 O 1.35802 * 119.92925 * 179.97438 * 18 17 16 20 20 C 1.42899 * 116.99532 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47267 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47379 * 180.02562 * 21 20 19 23 23 C 1.39421 * 120.15168 * 359.97438 * 18 17 16 24 24 O 1.35999 * 120.00220 * 179.72312 * 23 18 17 25 25 C 1.42895 * 117.00448 * 180.02562 * 24 23 18 26 26 C 1.53001 * 109.47547 * 179.97438 * 25 24 23 27 27 C 1.38128 * 120.00074 * 0.02562 * 23 18 17 28 28 H 4.40636 * 5.51529 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.47183 * 96.03950 * 3 2 1 30 30 H 1.09001 * 109.47453 * 336.04112 * 3 2 1 31 31 H 0.97000 * 119.99303 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.00746 * 359.95515 * 16 15 13 33 33 H 1.08001 * 119.92482 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47640 * 300.00055 * 20 19 18 35 35 H 1.09007 * 109.47133 * 60.00043 * 20 19 18 36 36 H 1.09000 * 109.47094 * 300.00139 * 21 20 19 37 37 H 1.08998 * 109.47045 * 59.99818 * 21 20 19 38 38 H 1.08996 * 109.46859 * 59.99845 * 22 21 20 39 39 H 1.08998 * 109.46922 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46933 * 300.00008 * 22 21 20 41 41 H 1.09001 * 109.47218 * 300.00001 * 25 24 23 42 42 H 1.09005 * 109.47289 * 60.00086 * 25 24 23 43 43 H 1.09004 * 109.47341 * 300.00574 * 26 25 24 44 44 H 1.09005 * 109.46689 * 59.99800 * 26 25 24 45 45 H 1.08994 * 109.47497 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.07622 * 179.97438 * 27 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1177 0.8127 5 6 3.2302 0.9846 2.1717 6 1 3.7470 1.7344 2.7525 7 6 2.6630 -0.1157 2.8044 8 7 2.0953 -1.0625 2.0921 9 14 2.7079 -0.2479 4.6671 10 1 3.3984 0.9397 5.2312 11 1 1.3203 -0.3091 5.1926 12 1 3.4402 -1.4791 5.0585 13 6 3.4876 2.2765 0.2222 14 8 3.9334 3.1888 0.8917 15 6 3.3341 2.4383 -1.2358 16 6 2.1772 1.9816 -1.8733 17 6 2.0353 2.1340 -3.2352 18 6 3.0398 2.7403 -3.9776 19 8 2.8954 2.8877 -5.3199 20 6 1.6852 2.3966 -5.8998 21 6 1.7031 2.6501 -7.4085 22 6 0.4071 2.1248 -8.0294 23 6 4.1966 3.1982 -3.3483 24 8 5.1810 3.7866 -4.0792 25 6 6.3385 4.2316 -3.3693 26 6 7.3284 4.8614 -4.3513 27 6 4.3455 3.0487 -1.9832 28 1 -1.0502 -0.0001 -0.0003 29 1 3.0093 0.1089 -1.0220 30 1 3.0098 -0.9383 0.4173 31 1 1.6998 -1.8304 2.5335 32 1 1.3945 1.5089 -1.2984 33 1 1.1410 1.7803 -3.7267 34 1 1.6004 1.3262 -5.7119 35 1 0.8338 2.9121 -5.4552 36 1 1.7876 3.7205 -7.5961 37 1 2.5544 2.1350 -7.8534 38 1 -0.4439 2.6403 -7.5844 39 1 0.4201 2.3050 -9.1043 40 1 0.3222 1.0544 -7.8418 41 1 6.0456 4.9710 -2.6238 42 1 6.8094 3.3827 -2.8736 43 1 7.6213 4.1218 -5.0966 44 1 6.8577 5.7103 -4.8474 45 1 8.2111 5.2013 -3.8097 46 1 5.2412 3.4026 -1.4945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281584061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:00 Heat of formation + Delta-G solvation = -10.458362 kcal Electronic energy + Delta-G solvation = -28465.813239 eV Core-core repulsion = 24517.069297 eV Total energy + Delta-G solvation = -3948.743942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45266 -38.85222 -38.50397 -36.29532 -35.32396 -34.01987 -32.24300 -31.68988 -31.38749 -30.04541 -29.11086 -26.88775 -26.36947 -24.87181 -23.89765 -22.47547 -22.12891 -20.94456 -19.66599 -18.21231 -18.00336 -17.39409 -16.55016 -16.40068 -16.18899 -15.85406 -15.71736 -14.80415 -14.65044 -14.26965 -14.16998 -14.11642 -14.01341 -13.26284 -13.13097 -13.03892 -12.76059 -12.66082 -12.39255 -12.37243 -12.09198 -11.96604 -11.83788 -11.45570 -11.40383 -11.16705 -11.15642 -11.02998 -10.73312 -10.62701 -10.60404 -10.44896 -10.26875 -9.60066 -9.30449 -8.79968 -8.61681 -8.41887 -8.02527 -7.49855 -6.32099 -3.93805 1.43086 1.66520 3.09617 3.20813 3.22541 3.27440 3.33214 3.58467 3.76050 3.96732 4.11115 4.24476 4.70213 4.71311 4.82701 4.97490 4.97714 5.03165 5.05248 5.13440 5.16796 5.24429 5.29533 5.36676 5.45643 5.47178 5.56469 5.66533 5.68226 5.72178 5.75508 5.79576 5.86443 5.92445 5.99640 6.02852 6.28838 6.43767 6.56922 6.85037 6.88947 6.97914 7.13212 7.24057 7.47861 7.77908 7.94318 8.37289 8.74276 9.04401 9.26593 9.81559 10.57249 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.003562 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.831374 B = 7858.809292 C = 9820.296612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.092 4.092 3 C 0.214 3.786 4 N -0.430 5.430 5 C -0.298 4.298 6 H 0.109 0.891 7 C 0.028 3.972 8 N -0.874 5.874 9 Si 0.934 3.066 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.481 3.519 14 O -0.584 6.584 15 C -0.093 4.093 16 C -0.100 4.100 17 C -0.178 4.178 18 C 0.103 3.897 19 O -0.306 6.306 20 C 0.056 3.944 21 C -0.122 4.122 22 C -0.150 4.150 23 C 0.091 3.909 24 O -0.308 6.308 25 C 0.050 3.950 26 C -0.148 4.148 27 C -0.131 4.131 28 H 0.199 0.801 29 H 0.061 0.939 30 H 0.140 0.860 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 3.069 -16.487 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.094 4.094 3 C 0.092 3.908 4 N -0.146 5.146 5 C -0.426 4.426 6 H 0.127 0.873 7 C -0.174 4.174 8 N -0.515 5.515 9 Si 0.761 3.239 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.270 3.730 14 O -0.470 6.470 15 C -0.097 4.097 16 C -0.118 4.118 17 C -0.197 4.197 18 C 0.057 3.943 19 O -0.220 6.220 20 C -0.019 4.019 21 C -0.160 4.160 22 C -0.207 4.207 23 C 0.045 3.955 24 O -0.223 6.223 25 C -0.025 4.025 26 C -0.205 4.205 27 C -0.151 4.151 28 H 0.216 0.784 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.680 3.432 -16.406 16.775 hybrid contribution -0.628 -0.407 1.277 1.480 sum 0.053 3.025 -15.129 15.429 Atomic orbital electron populations 1.24307 0.95416 1.03946 1.06248 1.23134 0.94342 0.96799 0.95150 1.19040 0.84203 0.94358 0.93237 1.43671 1.54049 1.09827 1.07048 1.19896 1.33352 1.08148 0.81157 0.87323 1.25354 0.95671 0.95473 1.00927 1.69924 1.36943 1.09860 1.34742 0.85723 0.78071 0.78403 0.81741 1.19174 1.20620 1.20596 1.17794 0.85603 0.83418 0.86143 1.90621 1.51022 1.40487 1.64865 1.19936 0.94811 1.00080 0.94835 1.21714 0.98095 0.98179 0.93848 1.20942 0.99020 1.04880 0.94851 1.18277 0.93213 1.00015 0.82801 1.86064 1.39889 1.77787 1.18281 1.22854 0.86125 0.98954 0.93989 1.21457 0.99044 1.02640 0.92817 1.21693 0.96760 1.01417 1.00825 1.17960 0.88459 0.99510 0.89529 1.86107 1.26711 1.73699 1.35754 1.22779 0.85254 0.98867 0.95592 1.21737 0.97784 1.01310 0.99678 1.21075 1.00784 1.02262 0.90994 0.78350 0.92094 0.84343 0.91969 0.83650 0.84884 0.92050 0.92158 0.90949 0.90902 0.92372 0.91914 0.92330 0.91922 0.92025 0.91704 0.91721 0.90565 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.66 18.88 29.55 0.56 -5.10 16 2 C -0.09 -2.04 8.69 -37.12 -0.32 -2.37 16 3 C 0.21 4.85 4.76 -6.83 -0.03 4.81 16 4 N -0.43 -10.96 2.60 -119.13 -0.31 -11.27 16 5 C -0.30 -8.10 9.48 -15.00 -0.14 -8.24 16 6 H 0.11 3.10 7.20 -52.48 -0.38 2.72 16 7 C 0.03 0.71 5.38 -17.45 -0.09 0.61 16 8 N -0.87 -21.94 8.08 55.50 0.45 -21.49 16 9 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.48 12.12 7.23 -12.48 -0.09 12.03 16 14 O -0.58 -16.49 16.56 5.26 0.09 -16.40 16 15 C -0.09 -1.95 4.97 -104.97 -0.52 -2.47 16 16 C -0.10 -1.88 7.57 -39.18 -0.30 -2.17 16 17 C -0.18 -2.86 9.01 -39.53 -0.36 -3.22 16 18 C 0.10 1.70 6.71 -38.92 -0.26 1.44 16 19 O -0.31 -4.61 9.91 -33.78 -0.33 -4.95 16 20 C 0.06 0.62 4.74 37.16 0.18 0.80 16 21 C -0.12 -1.08 6.30 -26.73 -0.17 -1.25 16 22 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 23 C 0.09 1.58 6.69 -39.18 -0.26 1.32 16 24 O -0.31 -4.96 9.92 -34.40 -0.34 -5.30 16 25 C 0.05 0.64 5.46 37.16 0.20 0.85 16 26 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 27 C -0.13 -2.48 8.65 -39.04 -0.34 -2.81 16 28 H 0.20 3.25 7.80 -54.08 -0.42 2.83 16 29 H 0.06 1.24 5.65 -51.93 -0.29 0.95 16 30 H 0.14 3.32 5.96 -51.93 -0.31 3.01 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.15 2.86 3.99 -52.48 -0.21 2.65 16 33 H 0.13 1.75 6.27 -52.49 -0.33 1.42 16 34 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 35 H 0.06 0.62 7.65 -51.92 -0.40 0.22 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.79 7.67 -51.93 -0.40 0.40 16 42 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.14 2.52 6.28 -52.49 -0.33 2.19 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -31.31 379.87 -7.33 -38.63 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.38 Total: 7.19 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -1.20 Total: -7.49 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.14 Total: -32.76 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.59 Total: -26.65 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.31 -7.33 -38.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281584061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.172 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds