Wall clock time and date at job start Tue Mar 31 2020 16:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47037 * 216.04112 * 3 2 1 5 5 C 1.36895 * 120.00055 * 83.23075 * 4 3 2 6 6 H 1.08008 * 119.99934 * 169.29540 * 5 4 3 7 7 C 1.39024 * 120.00091 * 349.28836 * 5 4 3 8 8 N 1.31381 * 119.99597 * 3.55030 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 183.54839 * 7 5 4 10 10 H 1.48503 * 109.47325 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46837 * 120.00293 * 9 7 5 12 12 H 1.48503 * 109.47325 * 240.00174 * 9 7 5 13 13 C 1.34783 * 119.99979 * 263.22924 * 4 3 2 14 14 O 1.21622 * 120.00044 * 182.38387 * 13 4 3 15 15 C 1.47501 * 119.99800 * 2.38845 * 13 4 3 16 16 C 1.39762 * 120.07775 * 42.89402 * 15 13 4 17 17 C 1.37777 * 119.99728 * 179.97438 * 16 15 13 18 18 C 1.38844 * 120.15692 * 0.02562 * 17 16 15 19 19 O 1.35802 * 119.92925 * 179.97438 * 18 17 16 20 20 C 1.42899 * 116.99532 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.47267 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47379 * 180.02562 * 21 20 19 23 23 C 1.39421 * 120.15168 * 359.97438 * 18 17 16 24 24 O 1.35999 * 120.00220 * 179.72312 * 23 18 17 25 25 C 1.42895 * 117.00448 * 180.02562 * 24 23 18 26 26 C 1.53001 * 109.47547 * 179.97438 * 25 24 23 27 27 C 1.38128 * 120.00074 * 0.02562 * 23 18 17 28 28 H 4.40636 * 5.51529 * 179.97438 * 4 1 2 29 29 H 1.09004 * 109.47183 * 96.03950 * 3 2 1 30 30 H 1.09001 * 109.47453 * 336.04112 * 3 2 1 31 31 H 0.97000 * 119.99303 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.00746 * 359.95515 * 16 15 13 33 33 H 1.08001 * 119.92482 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47640 * 300.00055 * 20 19 18 35 35 H 1.09007 * 109.47133 * 60.00043 * 20 19 18 36 36 H 1.09000 * 109.47094 * 300.00139 * 21 20 19 37 37 H 1.08998 * 109.47045 * 59.99818 * 21 20 19 38 38 H 1.08996 * 109.46859 * 59.99845 * 22 21 20 39 39 H 1.08998 * 109.46922 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46933 * 300.00008 * 22 21 20 41 41 H 1.09001 * 109.47218 * 300.00001 * 25 24 23 42 42 H 1.09005 * 109.47289 * 60.00086 * 25 24 23 43 43 H 1.09004 * 109.47341 * 300.00574 * 26 25 24 44 44 H 1.09005 * 109.46689 * 59.99800 * 26 25 24 45 45 H 1.08994 * 109.47497 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.07622 * 179.97438 * 27 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1177 0.8127 5 6 3.2302 0.9846 2.1717 6 1 3.7470 1.7344 2.7525 7 6 2.6630 -0.1157 2.8044 8 7 2.0953 -1.0625 2.0921 9 14 2.7079 -0.2479 4.6671 10 1 3.3984 0.9397 5.2312 11 1 1.3203 -0.3091 5.1926 12 1 3.4402 -1.4791 5.0585 13 6 3.4876 2.2765 0.2222 14 8 3.9334 3.1888 0.8917 15 6 3.3341 2.4383 -1.2358 16 6 2.1772 1.9816 -1.8733 17 6 2.0353 2.1340 -3.2352 18 6 3.0398 2.7403 -3.9776 19 8 2.8954 2.8877 -5.3199 20 6 1.6852 2.3966 -5.8998 21 6 1.7031 2.6501 -7.4085 22 6 0.4071 2.1248 -8.0294 23 6 4.1966 3.1982 -3.3483 24 8 5.1810 3.7866 -4.0792 25 6 6.3385 4.2316 -3.3693 26 6 7.3284 4.8614 -4.3513 27 6 4.3455 3.0487 -1.9832 28 1 -1.0502 -0.0001 -0.0003 29 1 3.0093 0.1089 -1.0220 30 1 3.0098 -0.9383 0.4173 31 1 1.6998 -1.8304 2.5335 32 1 1.3945 1.5089 -1.2984 33 1 1.1410 1.7803 -3.7267 34 1 1.6004 1.3262 -5.7119 35 1 0.8338 2.9121 -5.4552 36 1 1.7876 3.7205 -7.5961 37 1 2.5544 2.1350 -7.8534 38 1 -0.4439 2.6403 -7.5844 39 1 0.4201 2.3050 -9.1043 40 1 0.3222 1.0544 -7.8418 41 1 6.0456 4.9710 -2.6238 42 1 6.8094 3.3827 -2.8736 43 1 7.6213 4.1218 -5.0966 44 1 6.8577 5.7103 -4.8474 45 1 8.2111 5.2013 -3.8097 46 1 5.2412 3.4026 -1.4945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281584061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:59 Heat of formation + Delta-G solvation = -27.054174 kcal Electronic energy + Delta-G solvation = -28466.532888 eV Core-core repulsion = 24517.069297 eV Total energy + Delta-G solvation = -3949.463591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82976 -40.55101 -39.68599 -37.70139 -37.25783 -34.82255 -33.98966 -33.21734 -32.76015 -31.46330 -30.44603 -28.39474 -27.62751 -26.59973 -25.03191 -23.99067 -23.02036 -22.06231 -21.23373 -19.81264 -19.54626 -18.84286 -18.28904 -17.62186 -17.44358 -17.27630 -16.84943 -16.62106 -15.98401 -15.93807 -15.73790 -15.27803 -15.06876 -14.89663 -14.45265 -14.36819 -14.03930 -13.94627 -13.49334 -13.43254 -13.36108 -13.21360 -12.97947 -12.88890 -12.85388 -12.53624 -12.43414 -12.21208 -12.13575 -12.07284 -11.80926 -11.66283 -11.48679 -11.41496 -11.02590 -10.60699 -10.48201 -9.97950 -9.82407 -8.86974 -8.25807 -5.97818 -0.03332 0.26518 1.34540 1.40598 1.53489 1.87445 2.02290 2.12234 2.17449 2.29173 2.36188 2.64673 3.07964 3.11708 3.70745 3.79752 3.93112 3.95796 3.99974 4.03101 4.07327 4.11936 4.22228 4.25989 4.35885 4.38223 4.50629 4.60177 4.61440 4.63316 4.83049 4.85978 4.94214 4.94747 5.13357 5.16533 5.21108 5.22365 5.22929 5.38136 5.39179 5.41828 5.44955 5.52021 5.97773 6.07338 6.41391 6.53414 7.05681 7.09605 7.32508 7.87785 8.60110 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.003562 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.831374 B = 7858.809292 C = 9820.296612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.136 4.136 3 C 0.222 3.778 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.080 0.920 7 C 0.004 3.996 8 N -0.874 5.874 9 Si 0.994 3.006 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.265 1.265 13 C 0.470 3.530 14 O -0.632 6.632 15 C -0.119 4.119 16 C -0.100 4.100 17 C -0.165 4.165 18 C 0.113 3.887 19 O -0.315 6.315 20 C 0.044 3.956 21 C -0.119 4.119 22 C -0.146 4.146 23 C 0.088 3.912 24 O -0.314 6.314 25 C 0.040 3.960 26 C -0.141 4.141 27 C -0.135 4.135 28 H 0.237 0.763 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.274 0.726 32 H 0.140 0.860 33 H 0.169 0.831 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 2.301 -18.450 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.138 4.138 3 C 0.100 3.900 4 N -0.153 5.153 5 C -0.469 4.469 6 H 0.098 0.902 7 C -0.198 4.198 8 N -0.512 5.512 9 Si 0.817 3.183 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.190 1.190 13 C 0.261 3.739 14 O -0.521 6.521 15 C -0.123 4.123 16 C -0.118 4.118 17 C -0.184 4.184 18 C 0.067 3.933 19 O -0.229 6.229 20 C -0.030 4.030 21 C -0.156 4.156 22 C -0.203 4.203 23 C 0.042 3.958 24 O -0.229 6.229 25 C -0.035 4.035 26 C -0.198 4.198 27 C -0.155 4.155 28 H 0.254 0.746 29 H 0.096 0.904 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.186 0.814 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.916 2.624 -18.416 18.625 hybrid contribution -0.169 -0.170 1.735 1.751 sum -1.085 2.455 -16.682 16.896 Atomic orbital electron populations 1.25180 0.96274 1.01720 1.04022 1.23174 0.94675 0.98810 0.97140 1.18902 0.85183 0.92456 0.93433 1.43837 1.53912 1.10617 1.06886 1.19784 1.35836 1.08939 0.82340 0.90222 1.26021 0.94625 0.94550 1.04652 1.70052 1.35745 1.09555 1.35887 0.84864 0.78230 0.78309 0.76861 1.20242 1.19840 1.19019 1.18469 0.84692 0.82787 0.87918 1.90555 1.53105 1.41965 1.66511 1.19651 0.96920 1.03175 0.92557 1.21634 0.97037 0.98212 0.94951 1.21172 0.99954 1.03736 0.93492 1.18401 0.92641 0.98535 0.83766 1.86083 1.42009 1.77722 1.17073 1.23257 0.84896 0.99778 0.95117 1.21477 1.00172 1.02636 0.91345 1.21684 0.95626 1.01649 1.01366 1.18041 0.89347 0.99402 0.88985 1.86115 1.27219 1.73405 1.36159 1.23076 0.84823 0.99000 0.96553 1.21757 0.97588 1.01185 0.99256 1.21003 1.00397 1.02352 0.91746 0.74642 0.90426 0.86139 0.91473 0.84288 0.81368 0.90808 0.90964 0.91204 0.91124 0.91891 0.90839 0.91852 0.92257 0.91965 0.91320 0.91463 0.88281 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.69 18.88 74.32 1.40 -8.29 16 2 C -0.14 -5.96 8.69 31.12 0.27 -5.69 16 3 C 0.22 10.28 4.76 84.57 0.40 10.69 16 4 N -0.44 -23.34 2.60 -649.06 -1.69 -25.03 16 5 C -0.34 -19.47 9.48 84.09 0.80 -18.67 16 6 H 0.08 4.88 7.20 -2.91 -0.02 4.86 16 7 C 0.00 0.19 5.38 84.95 0.46 0.64 16 8 N -0.87 -43.77 8.08 21.68 0.18 -43.60 16 9 Si 0.99 42.08 29.55 68.60 2.03 44.10 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 13 C 0.47 25.06 7.23 86.68 0.63 25.68 16 14 O -0.63 -38.17 16.56 -4.10 -0.07 -38.24 16 15 C -0.12 -5.19 4.97 -20.09 -0.10 -5.29 16 16 C -0.10 -3.72 7.57 22.53 0.17 -3.55 16 17 C -0.17 -4.97 9.01 22.31 0.20 -4.77 16 18 C 0.11 3.58 6.71 22.70 0.15 3.73 16 19 O -0.31 -8.77 9.91 -77.31 -0.77 -9.54 16 20 C 0.04 0.84 4.74 71.98 0.34 1.18 16 21 C -0.12 -1.79 6.30 30.59 0.19 -1.60 16 22 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 23 C 0.09 3.05 6.69 22.53 0.15 3.20 16 24 O -0.31 -9.95 9.92 -79.52 -0.79 -10.74 16 25 C 0.04 1.02 5.46 71.98 0.39 1.42 16 26 C -0.14 -2.55 10.28 71.98 0.74 -1.81 16 27 C -0.14 -5.26 8.65 22.62 0.20 -5.07 16 28 H 0.24 6.80 7.80 -4.41 -0.03 6.76 16 29 H 0.08 3.24 5.65 -2.38 -0.01 3.23 16 30 H 0.12 5.94 5.96 -2.39 -0.01 5.93 16 31 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 32 H 0.14 5.40 3.99 -2.91 -0.01 5.39 16 33 H 0.17 3.79 6.27 -2.91 -0.02 3.78 16 34 H 0.07 1.25 7.65 -2.38 -0.02 1.23 16 35 H 0.07 1.23 7.65 -2.38 -0.02 1.22 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 1.54 7.67 -2.39 -0.02 1.52 16 42 H 0.06 1.56 7.65 -2.38 -0.02 1.54 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 46 H 0.13 5.19 6.28 -2.91 -0.02 5.17 16 Total: -1.00 -70.44 379.87 6.99 -63.45 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.99 Total: 28.64 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 7.11 Total: -9.04 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.51 Total: -68.63 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -1.62 Total: -58.52 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.44 6.99 -63.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281584061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.396 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds