Wall clock time and date at job start Tue Mar 31 2020 17:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99831 * 2 1 4 4 O 1.20827 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00169 * 180.02562 * 3 2 1 6 6 C 1.53002 * 110.30509 * 57.82837 * 5 3 2 7 7 C 1.54796 * 110.52573 * 295.60379 * 5 3 2 8 8 N 1.48150 * 104.41328 * 265.22368 * 7 5 3 9 9 C 1.34774 * 127.83743 * 140.37184 * 8 7 5 10 10 O 1.21589 * 120.00278 * 352.80360 * 9 8 7 11 11 C 1.47643 * 120.00263 * 172.80947 * 9 8 7 12 12 C 1.40012 * 119.89517 * 337.53099 * 11 9 8 13 13 C 1.36319 * 120.10885 * 180.23461 * 12 11 9 14 14 C 1.40889 * 119.88791 * 359.51364 * 13 12 11 15 15 C 1.41110 * 120.10039 * 180.21546 * 14 13 12 16 16 H 1.08002 * 119.99950 * 204.60658 * 15 14 13 17 17 C 1.40223 * 120.00253 * 24.60631 * 15 14 13 18 18 N 1.30652 * 119.99979 * 18.30825 * 17 15 14 19 19 Si 1.86802 * 120.00073 * 198.30471 * 17 15 14 20 20 H 1.48495 * 109.47187 * 60.00235 * 19 17 15 21 21 H 1.48508 * 109.47000 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47170 * 299.99862 * 19 17 15 23 23 C 1.40887 * 119.79410 * 0.47822 * 14 13 12 24 24 C 1.36314 * 119.89403 * 359.75960 * 23 14 13 25 25 C 1.48147 * 104.32374 * 320.10497 * 8 7 5 26 26 C 1.54279 * 110.34620 * 180.02562 * 5 3 2 27 27 H 1.09009 * 110.34533 * 359.97438 * 26 5 3 28 28 C 1.53001 * 110.43417 * 237.79136 * 26 5 3 29 29 H 1.08997 * 109.47460 * 59.99756 * 1 2 3 30 30 H 1.09006 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47137 * 299.99082 * 1 2 3 32 32 H 1.08995 * 109.47362 * 182.17471 * 6 5 3 33 33 H 1.08995 * 109.47193 * 302.17989 * 6 5 3 34 34 H 1.08999 * 109.47108 * 62.17418 * 6 5 3 35 35 H 1.09002 * 110.54505 * 146.48334 * 7 5 3 36 36 H 1.09001 * 110.46508 * 23.91716 * 7 5 3 37 37 H 1.08007 * 119.94386 * 359.94801 * 12 11 9 38 38 H 1.08002 * 120.05317 * 179.74558 * 13 12 11 39 39 H 0.96994 * 119.99921 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.04993 * 179.77653 * 23 14 13 41 41 H 1.07992 * 119.95251 * 179.97438 * 24 23 14 42 42 H 1.09001 * 110.40646 * 158.63775 * 25 8 7 43 43 H 1.09008 * 110.40744 * 280.94285 * 25 8 7 44 44 H 1.09001 * 109.46890 * 302.95480 * 28 26 5 45 45 H 1.08993 * 109.47303 * 62.95110 * 28 26 5 46 46 H 1.08998 * 109.47453 * 182.95538 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1360 0.5400 -1.2156 7 6 4.1416 0.6775 1.3064 8 7 4.3221 1.8467 2.1982 9 6 4.0819 1.9215 3.5222 10 8 3.5438 0.9943 4.0958 11 6 4.4720 3.1295 4.2762 12 6 5.4738 3.9706 3.7769 13 6 5.8407 5.0844 4.4719 14 6 5.2029 5.3941 5.6894 15 6 5.5761 6.5484 6.4102 16 1 5.4113 6.5960 7.4765 17 6 6.1609 7.6337 5.7421 18 7 6.0418 7.7438 4.4457 19 14 7.1102 8.9221 6.7056 20 1 8.2490 8.2765 7.4065 21 1 7.6247 9.9576 5.7737 22 1 6.2110 9.5569 7.7025 23 6 4.1954 4.5447 6.1877 24 6 3.8386 3.4305 5.4881 25 6 4.8329 2.9131 1.3055 26 6 4.0261 2.7476 0.0002 27 1 3.1635 3.4141 0.0005 28 6 4.9143 3.0305 -1.2131 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 5.2250 0.5724 -1.1821 33 1 3.8027 -0.4976 -1.2017 34 1 3.7861 1.0218 -2.1286 35 1 5.0993 0.1929 1.1164 36 1 3.4372 -0.0295 1.7447 37 1 5.9598 3.7340 2.8418 38 1 6.6164 5.7304 4.0879 39 1 6.4466 8.4944 3.9835 40 1 3.7063 4.7762 7.1224 41 1 3.0667 2.7786 5.8694 42 1 4.6508 3.8946 1.7431 43 1 5.8974 2.7735 1.1171 44 1 5.7649 2.3489 -1.2075 45 1 4.3383 2.8850 -2.1269 46 1 5.2726 4.0590 -1.1693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283199135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:20 Heat of formation + Delta-G solvation = -94.580699 kcal Electronic energy + Delta-G solvation = -28954.957937 eV Core-core repulsion = 25002.566176 eV Total energy + Delta-G solvation = -3952.391760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15141 -39.44729 -37.92931 -36.90672 -36.35094 -33.92322 -33.39829 -31.42285 -30.17678 -29.47303 -27.86637 -27.24015 -26.02477 -25.47550 -24.09144 -21.98700 -21.40390 -20.85630 -19.12181 -18.91543 -17.54078 -17.34795 -17.18731 -16.49578 -16.06442 -15.69957 -15.37074 -15.10601 -14.47620 -14.24829 -13.96514 -13.73872 -13.63137 -13.24430 -13.04423 -12.80667 -12.70278 -12.44778 -12.21928 -12.18588 -12.07332 -11.99785 -11.89922 -11.68228 -11.30226 -11.25385 -11.14825 -10.98702 -10.88226 -10.79458 -10.63847 -10.52167 -10.34674 -10.04976 -9.51413 -9.30007 -9.01474 -8.36564 -7.69637 -7.54012 -7.03055 -4.59415 2.15193 2.25858 2.58701 2.92634 2.94400 2.98814 3.03399 3.41005 3.73405 3.78511 4.20035 4.39836 4.54077 4.62054 4.84445 4.98542 5.01768 5.07858 5.26543 5.27601 5.35572 5.41185 5.49464 5.52328 5.56820 5.66480 5.74697 5.79158 5.84174 5.91631 6.02045 6.10487 6.14074 6.27854 6.30623 6.37256 6.60834 6.78778 6.83325 7.05050 7.13887 7.44745 7.65002 7.68836 7.81636 7.86838 8.06455 8.15613 8.40431 8.63922 8.76134 8.97403 9.89013 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.003069 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.660509 B = 9122.737003 C = 9794.633411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.499 6.499 5 C -0.066 4.066 6 C -0.136 4.136 7 C 0.120 3.880 8 N -0.630 5.630 9 C 0.596 3.404 10 O -0.570 6.570 11 C -0.280 4.280 12 C -0.072 4.072 13 C -0.179 4.179 14 C 0.129 3.871 15 C -0.444 4.444 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.771 5.771 19 Si 0.913 3.087 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.237 4.237 24 C -0.023 4.023 25 C 0.103 3.897 26 C -0.102 4.102 27 H 0.104 0.896 28 C -0.142 4.142 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -8.705 -13.444 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.318 3.682 4 O -0.385 6.385 5 C -0.068 4.068 6 C -0.194 4.194 7 C -0.004 4.004 8 N -0.365 5.365 9 C 0.393 3.607 10 O -0.451 6.451 11 C -0.284 4.284 12 C -0.090 4.090 13 C -0.198 4.198 14 C 0.126 3.874 15 C -0.471 4.471 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.394 5.394 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.257 4.257 24 C -0.043 4.043 25 C -0.020 4.020 26 C -0.121 4.121 27 H 0.122 0.878 28 C -0.200 4.200 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.597 -8.724 -13.202 15.904 hybrid contribution 0.073 0.756 0.271 0.806 sum -1.524 -7.968 -12.931 15.265 Atomic orbital electron populations 1.23265 0.76408 1.03607 1.02572 1.86478 1.23341 1.33334 1.84116 1.23432 0.91637 0.81322 0.71785 1.90646 1.66748 1.36328 1.44787 1.21574 0.87303 0.99132 0.98805 1.21921 1.01960 1.00226 0.95258 1.22283 1.01077 0.90039 0.86976 1.48816 1.67748 1.12673 1.07220 1.18391 0.76162 0.87541 0.78566 1.90649 1.45394 1.40823 1.68246 1.18779 1.09514 0.99841 1.00261 1.20868 0.96117 0.94296 0.97756 1.20975 1.03151 0.97511 0.98181 1.17779 0.87512 0.90950 0.91204 1.19810 1.32821 0.98215 0.96288 0.89797 1.26084 0.94210 0.99322 0.94977 1.69736 1.31911 1.28352 1.09439 0.86275 0.80501 0.79284 0.80287 1.18482 1.20047 1.18692 1.20694 1.03065 0.99396 1.02544 1.20309 0.96461 0.95037 0.92448 1.22780 0.97012 0.93916 0.88313 1.22353 1.00382 0.93464 0.95946 0.87808 1.21909 0.99196 1.02308 0.96545 0.92029 0.88100 0.91789 0.90246 0.91264 0.91456 0.89956 0.89415 0.88032 0.86220 0.90195 0.88397 0.88423 0.88020 0.91008 0.91872 0.92194 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.62 10.29 -39.25 -0.40 -5.02 16 3 C 0.48 6.97 6.54 36.01 0.24 7.21 16 4 O -0.50 -8.71 15.01 -18.75 -0.28 -8.99 16 5 C -0.07 -0.81 0.97 -154.04 -0.15 -0.96 16 6 C -0.14 -1.15 7.21 37.16 0.27 -0.88 16 7 C 0.12 1.71 6.17 -2.19 -0.01 1.70 16 8 N -0.63 -11.27 3.31 -170.25 -0.56 -11.83 16 9 C 0.60 13.31 7.70 -12.42 -0.10 13.21 16 10 O -0.57 -14.14 16.79 5.29 0.09 -14.05 16 11 C -0.28 -6.57 5.75 -104.73 -0.60 -7.17 16 12 C -0.07 -1.60 7.89 -39.61 -0.31 -1.92 16 13 C -0.18 -4.38 8.64 -39.27 -0.34 -4.72 16 14 C 0.13 3.30 5.57 -106.80 -0.60 2.70 16 15 C -0.44 -11.07 9.04 -37.75 -0.34 -11.42 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.08 1.76 5.13 -17.31 -0.09 1.67 16 18 N -0.77 -18.33 10.98 55.56 0.61 -17.72 16 19 Si 0.91 17.28 29.60 -169.99 -5.03 12.24 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 21 H -0.28 -5.06 7.11 56.52 0.40 -4.65 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.56 9.52 -39.61 -0.38 -0.94 16 25 C 0.10 1.54 4.58 -2.43 -0.01 1.53 16 26 C -0.10 -1.31 3.24 -89.25 -0.29 -1.60 16 27 H 0.10 1.58 6.47 -51.92 -0.34 1.25 16 28 C -0.14 -1.31 7.93 37.16 0.29 -1.02 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.08 0.55 6.68 -51.93 -0.35 0.20 16 33 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.07 0.52 6.89 -51.93 -0.36 0.16 16 35 H 0.08 0.97 7.84 -51.93 -0.41 0.56 16 36 H 0.09 1.39 7.46 -51.93 -0.39 1.00 16 37 H 0.10 1.96 4.89 -52.48 -0.26 1.70 16 38 H 0.12 2.95 6.17 -52.49 -0.32 2.62 16 39 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 40 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 41 H 0.10 2.28 7.79 -52.49 -0.41 1.87 16 42 H 0.10 1.74 5.82 -51.93 -0.30 1.44 16 43 H 0.07 0.92 7.52 -51.92 -0.39 0.53 16 44 H 0.06 0.49 6.63 -51.93 -0.34 0.14 16 45 H 0.06 0.50 6.99 -51.93 -0.36 0.14 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -31.00 369.52 -8.05 -39.06 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.31 Total: 8.15 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.73 Total: -7.40 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.05 Total: -29.55 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.60 Total: -28.07 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.00 -8.05 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283199135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.524 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds