Wall clock time and date at job start Tue Mar 31 2020 17:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99831 * 2 1 4 4 O 1.20827 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00169 * 180.02562 * 3 2 1 6 6 C 1.53002 * 110.30509 * 57.82837 * 5 3 2 7 7 C 1.54796 * 110.52573 * 295.60379 * 5 3 2 8 8 N 1.48150 * 104.41328 * 265.22368 * 7 5 3 9 9 C 1.34774 * 127.83743 * 140.37184 * 8 7 5 10 10 O 1.21589 * 120.00278 * 352.80360 * 9 8 7 11 11 C 1.47643 * 120.00263 * 172.80947 * 9 8 7 12 12 C 1.40012 * 119.89517 * 337.53099 * 11 9 8 13 13 C 1.36319 * 120.10885 * 180.23461 * 12 11 9 14 14 C 1.40889 * 119.88791 * 359.51364 * 13 12 11 15 15 C 1.41110 * 120.10039 * 180.21546 * 14 13 12 16 16 H 1.08002 * 119.99950 * 204.60658 * 15 14 13 17 17 C 1.40223 * 120.00253 * 24.60631 * 15 14 13 18 18 N 1.30652 * 119.99979 * 18.30825 * 17 15 14 19 19 Si 1.86802 * 120.00073 * 198.30471 * 17 15 14 20 20 H 1.48495 * 109.47187 * 60.00235 * 19 17 15 21 21 H 1.48508 * 109.47000 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47170 * 299.99862 * 19 17 15 23 23 C 1.40887 * 119.79410 * 0.47822 * 14 13 12 24 24 C 1.36314 * 119.89403 * 359.75960 * 23 14 13 25 25 C 1.48147 * 104.32374 * 320.10497 * 8 7 5 26 26 C 1.54279 * 110.34620 * 180.02562 * 5 3 2 27 27 H 1.09009 * 110.34533 * 359.97438 * 26 5 3 28 28 C 1.53001 * 110.43417 * 237.79136 * 26 5 3 29 29 H 1.08997 * 109.47460 * 59.99756 * 1 2 3 30 30 H 1.09006 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47137 * 299.99082 * 1 2 3 32 32 H 1.08995 * 109.47362 * 182.17471 * 6 5 3 33 33 H 1.08995 * 109.47193 * 302.17989 * 6 5 3 34 34 H 1.08999 * 109.47108 * 62.17418 * 6 5 3 35 35 H 1.09002 * 110.54505 * 146.48334 * 7 5 3 36 36 H 1.09001 * 110.46508 * 23.91716 * 7 5 3 37 37 H 1.08007 * 119.94386 * 359.94801 * 12 11 9 38 38 H 1.08002 * 120.05317 * 179.74558 * 13 12 11 39 39 H 0.96994 * 119.99921 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.04993 * 179.77653 * 23 14 13 41 41 H 1.07992 * 119.95251 * 179.97438 * 24 23 14 42 42 H 1.09001 * 110.40646 * 158.63775 * 25 8 7 43 43 H 1.09008 * 110.40744 * 280.94285 * 25 8 7 44 44 H 1.09001 * 109.46890 * 302.95480 * 28 26 5 45 45 H 1.08993 * 109.47303 * 62.95110 * 28 26 5 46 46 H 1.08998 * 109.47453 * 182.95538 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1360 0.5400 -1.2156 7 6 4.1416 0.6775 1.3064 8 7 4.3221 1.8467 2.1982 9 6 4.0819 1.9215 3.5222 10 8 3.5438 0.9943 4.0958 11 6 4.4720 3.1295 4.2762 12 6 5.4738 3.9706 3.7769 13 6 5.8407 5.0844 4.4719 14 6 5.2029 5.3941 5.6894 15 6 5.5761 6.5484 6.4102 16 1 5.4113 6.5960 7.4765 17 6 6.1609 7.6337 5.7421 18 7 6.0418 7.7438 4.4457 19 14 7.1102 8.9221 6.7056 20 1 8.2490 8.2765 7.4065 21 1 7.6247 9.9576 5.7737 22 1 6.2110 9.5569 7.7025 23 6 4.1954 4.5447 6.1877 24 6 3.8386 3.4305 5.4881 25 6 4.8329 2.9131 1.3055 26 6 4.0261 2.7476 0.0002 27 1 3.1635 3.4141 0.0005 28 6 4.9143 3.0305 -1.2131 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 5.2250 0.5724 -1.1821 33 1 3.8027 -0.4976 -1.2017 34 1 3.7861 1.0218 -2.1286 35 1 5.0993 0.1929 1.1164 36 1 3.4372 -0.0295 1.7447 37 1 5.9598 3.7340 2.8418 38 1 6.6164 5.7304 4.0879 39 1 6.4466 8.4944 3.9835 40 1 3.7063 4.7762 7.1224 41 1 3.0667 2.7786 5.8694 42 1 4.6508 3.8946 1.7431 43 1 5.8974 2.7735 1.1171 44 1 5.7649 2.3489 -1.2075 45 1 4.3383 2.8850 -2.1269 46 1 5.2726 4.0590 -1.1693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283199135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:19 Heat of formation + Delta-G solvation = -111.710091 kcal Electronic energy + Delta-G solvation = -28955.700723 eV Core-core repulsion = 25002.566176 eV Total energy + Delta-G solvation = -3953.134547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.29290 -40.89248 -39.39996 -38.61639 -37.53186 -35.71562 -34.71096 -32.52250 -31.84194 -31.34316 -28.75095 -28.62836 -27.27369 -26.72914 -25.32884 -23.35044 -23.05310 -22.47784 -20.68546 -20.00992 -19.35572 -18.55923 -18.38362 -17.57708 -17.47291 -17.38960 -16.85129 -16.48393 -15.90764 -15.44377 -15.21826 -15.07295 -14.97338 -14.57900 -14.47627 -14.13674 -14.03281 -13.87424 -13.74771 -13.51346 -13.12428 -13.06926 -13.03497 -12.99212 -12.84073 -12.65926 -12.42881 -12.34856 -12.15154 -11.89641 -11.81651 -11.79897 -11.50946 -11.46224 -11.27376 -11.07865 -10.76996 -9.83367 -9.57295 -9.41584 -8.79791 -6.49028 0.44028 1.02307 1.12180 1.38714 1.43973 1.52108 1.61501 1.96076 2.06891 2.17236 2.72262 3.16641 3.37092 3.63633 3.68405 3.89977 4.00169 4.08593 4.21035 4.21558 4.24905 4.36273 4.39200 4.45637 4.54568 4.58106 4.63593 4.68086 4.76899 4.79891 4.89671 4.97079 5.00934 5.11580 5.14559 5.18316 5.24342 5.26039 5.30092 5.34283 5.53754 5.57855 5.79888 5.94339 5.98494 6.20371 6.52088 6.53768 6.59385 6.75945 6.87476 7.26842 8.15519 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.003069 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.660509 B = 9122.737003 C = 9794.633411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.537 6.537 5 C -0.060 4.060 6 C -0.131 4.131 7 C 0.116 3.884 8 N -0.631 5.631 9 C 0.590 3.410 10 O -0.606 6.606 11 C -0.293 4.293 12 C -0.059 4.059 13 C -0.197 4.197 14 C 0.102 3.898 15 C -0.474 4.474 16 H 0.084 0.916 17 C 0.040 3.960 18 N -0.795 5.795 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.262 1.262 22 H -0.260 1.260 23 C -0.253 4.253 24 C -0.037 4.037 25 C 0.097 3.903 26 C -0.097 4.097 27 H 0.072 0.928 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.298 0.702 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -9.061 -15.818 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.062 4.062 6 C -0.188 4.188 7 C -0.006 4.006 8 N -0.363 5.363 9 C 0.387 3.613 10 O -0.490 6.490 11 C -0.298 4.298 12 C -0.077 4.077 13 C -0.216 4.216 14 C 0.099 3.901 15 C -0.501 4.501 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.418 5.418 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.186 1.186 22 H -0.184 1.184 23 C -0.272 4.272 24 C -0.056 4.056 25 C -0.025 4.025 26 C -0.116 4.116 27 H 0.090 0.910 28 C -0.193 4.193 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.375 -9.103 -15.637 18.098 hybrid contribution -0.657 0.812 0.937 1.403 sum -0.282 -8.292 -14.700 16.880 Atomic orbital electron populations 1.23543 0.75057 1.05846 1.02086 1.86475 1.24759 1.32498 1.83542 1.24057 0.92791 0.81172 0.70710 1.90634 1.67802 1.37564 1.46670 1.21668 0.85758 0.99134 0.99602 1.21996 1.03407 1.00123 0.93293 1.22610 1.02708 0.88553 0.86745 1.48778 1.66226 1.14979 1.06337 1.18187 0.76308 0.86643 0.80192 1.90614 1.47088 1.41720 1.69600 1.19081 1.09676 1.00668 1.00345 1.21108 0.95235 0.93065 0.98337 1.21019 1.03634 0.98436 0.98504 1.18130 0.88114 0.91727 0.92150 1.20086 1.34426 0.99043 0.96560 0.89767 1.26910 0.94329 1.00871 0.95887 1.69752 1.31888 1.29383 1.10752 0.85166 0.78779 0.76529 0.78838 1.18233 1.18562 1.18445 1.20824 1.03514 0.99803 1.03096 1.20451 0.96820 0.95123 0.93204 1.23000 0.99218 0.91761 0.88482 1.22272 0.99677 0.93253 0.96396 0.90960 1.21917 0.99385 1.03092 0.94911 0.91233 0.84526 0.93615 0.87562 0.90385 0.90285 0.86119 0.91381 0.84833 0.86556 0.89057 0.87870 0.88543 0.90728 0.87554 0.89182 0.90870 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -8.93 10.29 -51.40 -0.53 -9.46 16 3 C 0.47 13.49 6.54 71.24 0.47 13.95 16 4 O -0.54 -19.20 15.01 21.96 0.33 -18.87 16 5 C -0.06 -1.34 0.97 -51.88 -0.05 -1.39 16 6 C -0.13 -1.64 7.21 71.98 0.52 -1.13 16 7 C 0.12 3.09 6.17 86.68 0.54 3.63 16 8 N -0.63 -22.11 3.31 -810.82 -2.68 -24.80 16 9 C 0.59 26.87 7.70 86.73 0.67 27.53 16 10 O -0.61 -30.95 16.79 -3.99 -0.07 -31.02 16 11 C -0.29 -14.18 5.75 -19.93 -0.11 -14.29 16 12 C -0.06 -2.67 7.89 22.25 0.18 -2.49 16 13 C -0.20 -9.84 8.64 22.47 0.19 -9.65 16 14 C 0.10 5.40 5.57 -21.28 -0.12 5.29 16 15 C -0.47 -24.23 9.04 23.46 0.21 -24.02 16 16 H 0.08 4.14 7.91 -2.91 -0.02 4.11 16 17 C 0.04 1.84 5.13 85.35 0.44 2.28 16 18 N -0.79 -37.77 10.98 21.87 0.24 -37.53 16 19 Si 0.99 34.80 29.60 68.60 2.03 36.83 16 20 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 21 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 23 C -0.25 -13.02 9.73 22.47 0.22 -12.80 16 24 C -0.04 -1.86 9.52 22.25 0.21 -1.65 16 25 C 0.10 2.75 4.58 86.52 0.40 3.15 16 26 C -0.10 -2.30 3.24 -9.90 -0.03 -2.33 16 27 H 0.07 2.22 6.47 -2.38 -0.02 2.20 16 28 C -0.14 -2.00 7.93 71.98 0.57 -1.43 16 29 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.04 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.11 0.81 6.68 -2.39 -0.02 0.80 16 33 H 0.08 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.08 0.86 6.89 -2.39 -0.02 0.85 16 35 H 0.12 2.34 7.84 -2.39 -0.02 2.32 16 36 H 0.07 2.11 7.46 -2.39 -0.02 2.09 16 37 H 0.13 5.02 4.89 -2.91 -0.01 5.00 16 38 H 0.12 5.82 6.17 -2.91 -0.02 5.80 16 39 H 0.30 12.55 8.29 -92.71 -0.77 11.78 16 40 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.10 4.78 7.79 -2.91 -0.02 4.76 16 42 H 0.07 2.54 5.82 -2.39 -0.01 2.53 16 43 H 0.11 2.31 7.52 -2.38 -0.02 2.30 16 44 H 0.09 0.88 6.63 -2.39 -0.02 0.86 16 45 H 0.07 0.93 6.99 -2.39 -0.02 0.91 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.65 369.52 5.81 -65.84 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 1.01 Total: 32.61 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.49 Total: -13.61 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -2.44 Total: -62.32 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -0.27 Total: -59.35 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -71.65 5.81 -65.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283199135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.873 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds