Wall clock time and date at job start Tue Mar 31 2020 16:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50691 * 120.00104 * 2 1 4 4 N 1.46497 * 109.47241 * 127.39817 * 3 2 1 5 5 C 1.46501 * 120.00119 * 280.61308 * 4 3 2 6 6 C 1.50701 * 109.47409 * 269.99845 * 5 4 3 7 7 H 1.08004 * 119.99799 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00003 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00232 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99913 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47145 * 59.99895 * 10 8 6 12 12 H 1.48495 * 109.47439 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47194 * 300.00138 * 10 8 6 14 14 C 1.34779 * 120.00401 * 100.61177 * 4 3 2 15 15 O 1.21579 * 120.00465 * 178.18734 * 14 4 3 16 16 C 1.47608 * 119.99374 * 358.18649 * 14 4 3 17 17 C 1.39734 * 120.08869 * 319.04045 * 16 14 4 18 18 C 1.37700 * 119.91044 * 179.97438 * 17 16 14 19 19 C 1.38993 * 120.08770 * 359.97438 * 18 17 16 20 20 O 1.35710 * 119.91441 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00446 * 185.31828 * 20 19 18 22 22 H 1.08994 * 110.90805 * 30.99809 * 21 20 19 23 23 C 1.55306 * 110.84873 * 154.58204 * 21 20 19 24 24 C 1.54944 * 100.94128 * 152.32226 * 23 21 20 25 25 O 1.43644 * 105.14015 * 323.55906 * 24 23 21 26 26 C 1.43235 * 109.96941 * 24.42020 * 25 24 23 27 27 C 1.38998 * 120.18069 * 0.27098 * 19 18 17 28 28 C 1.37714 * 120.08085 * 359.49110 * 27 19 18 29 29 H 1.08005 * 120.00547 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.00198 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.99514 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.47456 * 7.40082 * 3 2 1 33 33 H 1.09001 * 109.47746 * 247.40044 * 3 2 1 34 34 H 1.08998 * 109.47205 * 29.99945 * 5 4 3 35 35 H 1.09003 * 109.47311 * 149.99799 * 5 4 3 36 36 H 0.96997 * 119.99943 * 180.02562 * 9 8 6 37 37 H 1.08000 * 120.04551 * 359.95551 * 17 16 14 38 38 H 1.08004 * 119.95416 * 179.97438 * 18 17 16 39 39 H 1.09003 * 111.12808 * 34.40337 * 23 21 20 40 40 H 1.09003 * 111.12560 * 270.23871 * 23 21 20 41 41 H 1.08996 * 110.31343 * 204.63639 * 24 23 21 42 42 H 1.09007 * 110.39234 * 82.51467 * 24 23 21 43 43 H 1.09010 * 109.82864 * 117.80792 * 26 25 24 44 44 H 1.08998 * 109.83360 * 238.77857 * 26 25 24 45 45 H 1.07992 * 119.96233 * 179.72634 * 27 19 18 46 46 H 1.08002 * 120.03992 * 180.27647 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0341 1.3085 1.0973 5 6 2.5923 1.5911 2.4652 6 6 2.6743 3.0736 2.7234 7 1 3.0205 3.7388 1.9461 8 6 2.3065 3.5808 3.9515 9 7 1.8835 2.7710 4.8976 10 14 2.4074 5.4185 4.2713 11 1 1.5330 6.1370 3.3099 12 1 1.9597 5.7050 5.6579 13 1 3.8103 5.8743 4.1006 14 6 4.3336 1.0516 0.8484 15 8 5.1445 1.0869 1.7535 16 6 4.7721 0.7274 -0.5233 17 6 3.9955 -0.1109 -1.3273 18 6 4.4078 -0.4105 -2.6065 19 6 5.5946 0.1202 -3.0984 20 8 5.9973 -0.1769 -4.3598 21 6 7.2810 0.3054 -4.7616 22 1 7.9602 0.3591 -3.9108 23 6 7.8765 -0.5811 -5.8891 24 6 8.7809 0.4421 -6.6211 25 8 8.0617 1.6844 -6.5673 26 6 7.1593 1.6794 -5.4550 27 6 6.3726 0.9505 -2.3000 28 6 5.9646 1.2588 -1.0213 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3626 2.1293 0.1324 33 1 2.5872 1.4223 -0.9487 34 1 1.5625 1.2569 2.5908 35 1 3.2342 1.0634 3.1707 36 1 1.6244 3.1279 5.7614 37 1 3.0732 -0.5236 -0.9459 38 1 3.8083 -1.0588 -3.2285 39 1 7.0940 -0.9562 -6.5487 40 1 8.4650 -1.4001 -5.4755 41 1 8.9347 0.1385 -7.6566 42 1 9.7386 0.5370 -6.1092 43 1 7.4293 2.4714 -4.7562 44 1 6.1382 1.8271 -5.8064 45 1 7.2962 1.3574 -2.6842 46 1 6.5674 1.9076 -0.4031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292232902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:30 Heat of formation + Delta-G solvation = -50.346537 kcal Electronic energy + Delta-G solvation = -27957.605641 eV Core-core repulsion = 24007.132018 eV Total energy + Delta-G solvation = -3950.473623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88291 -39.78352 -38.69194 -36.83717 -35.82655 -33.21933 -32.22565 -32.07626 -31.15542 -30.22613 -29.24863 -27.44636 -25.62477 -24.00055 -23.48210 -22.99403 -22.03296 -21.39068 -20.19391 -18.82538 -18.69046 -17.21718 -16.99602 -16.53248 -16.42359 -15.88221 -15.59662 -15.34105 -14.93064 -14.62791 -14.49448 -14.38811 -13.94317 -13.81294 -13.59790 -13.42905 -13.18683 -12.85407 -12.75905 -12.41576 -12.14066 -12.02819 -11.94860 -11.67264 -11.45257 -11.24515 -11.11632 -10.96508 -10.93172 -10.72423 -10.57613 -10.18124 -10.03012 -9.68270 -9.26443 -9.06766 -9.01231 -8.42836 -8.25516 -7.71410 -6.03766 -4.08380 1.07714 1.29089 2.41284 2.67797 3.26199 3.32398 3.36718 3.39987 3.42247 3.76593 3.85887 4.07809 4.31530 4.33653 4.45179 4.54634 4.66750 4.74491 4.76499 4.95331 5.08138 5.17109 5.19799 5.20844 5.27743 5.30474 5.34050 5.37925 5.39163 5.50289 5.53415 5.68703 5.94195 6.00031 6.10565 6.20229 6.20638 6.43130 6.45894 6.56415 6.76121 6.88461 7.08479 7.16174 7.43370 7.52639 7.92315 8.23351 8.36674 8.88368 9.04544 9.56339 11.04401 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002641 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.094088 B =10600.743389 C =11512.113607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.127 3.873 4 N -0.585 5.585 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.548 3.452 15 O -0.535 6.535 16 C -0.150 4.150 17 C -0.065 4.065 18 C -0.156 4.156 19 C 0.134 3.866 20 O -0.297 6.297 21 C 0.048 3.952 22 H 0.096 0.904 23 C -0.152 4.152 24 C 0.051 3.949 25 O -0.377 6.377 26 C 0.030 3.970 27 C -0.217 4.217 28 C -0.028 4.028 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.130 0.870 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.175 -8.124 -22.610 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.195 4.195 3 C 0.004 3.996 4 N -0.316 5.316 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.334 3.666 15 O -0.413 6.413 16 C -0.153 4.153 17 C -0.083 4.083 18 C -0.175 4.175 19 C 0.089 3.911 20 O -0.211 6.211 21 C -0.009 4.009 22 H 0.114 0.886 23 C -0.190 4.190 24 C -0.025 4.025 25 O -0.296 6.296 26 C -0.047 4.047 27 C -0.236 4.236 28 C -0.047 4.047 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.148 0.852 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.448 -8.023 -22.186 24.740 hybrid contribution 0.093 0.933 0.541 1.082 sum 7.542 -7.090 -21.645 23.993 Atomic orbital electron populations 1.23840 0.95754 1.01922 0.99671 1.23422 0.96407 0.98859 1.00764 1.20812 0.92486 0.95322 0.91004 1.48161 1.05741 1.67130 1.10520 1.19294 0.95605 0.96446 0.75765 1.21381 1.44187 0.92352 0.98602 0.92492 1.24924 0.95110 0.98203 0.95807 1.69922 1.44170 1.34791 1.04462 0.86565 0.78555 0.85145 0.77197 1.20250 1.21180 1.20177 1.18135 0.82954 0.78145 0.87323 1.90769 1.52174 1.52334 1.45982 1.20190 0.97034 1.02249 0.95859 1.21829 0.99082 0.95112 0.92282 1.20321 0.96218 1.04403 0.96536 1.19192 0.94213 0.94335 0.83366 1.86081 1.34256 1.72933 1.27817 1.24039 0.84536 0.94091 0.98217 0.88636 1.23348 1.00032 0.98649 0.96923 1.23368 0.94763 0.82794 1.01580 1.88462 1.55905 1.36655 1.48603 1.23663 0.95449 0.96653 0.88891 1.21144 1.01981 1.04290 0.96137 1.21019 0.93851 0.95988 0.93871 0.88597 0.88154 0.87275 0.89702 0.89779 0.94695 0.93847 0.92665 0.83244 0.84821 0.88803 0.88789 0.88902 0.91562 0.90370 0.89746 0.85229 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 14.32 29.01 0.42 -1.79 16 2 C -0.18 -2.46 8.34 -36.03 -0.30 -2.76 16 3 C 0.13 2.10 5.32 -5.20 -0.03 2.08 16 4 N -0.59 -12.51 2.46 -177.64 -0.44 -12.95 16 5 C 0.25 6.49 5.13 -5.19 -0.03 6.46 16 6 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.55 11.77 7.30 -12.44 -0.09 11.68 16 15 O -0.53 -13.82 16.53 5.30 0.09 -13.73 16 16 C -0.15 -2.49 5.07 -104.96 -0.53 -3.02 16 17 C -0.07 -0.88 7.45 -39.22 -0.29 -1.17 16 18 C -0.16 -1.84 9.97 -39.50 -0.39 -2.23 16 19 C 0.13 1.57 6.69 -39.02 -0.26 1.31 16 20 O -0.30 -3.11 9.86 -18.83 -0.19 -3.29 16 21 C 0.05 0.39 2.78 -24.78 -0.07 0.32 16 22 H 0.10 0.71 6.11 -51.93 -0.32 0.39 16 23 C -0.15 -0.94 6.89 -24.48 -0.17 -1.11 16 24 C 0.05 0.32 7.78 38.18 0.30 0.61 16 25 O -0.38 -3.56 11.36 -35.23 -0.40 -3.96 16 26 C 0.03 0.26 7.49 37.88 0.28 0.55 16 27 C -0.22 -2.59 8.95 -39.49 -0.35 -2.94 16 28 C -0.03 -0.42 9.64 -39.22 -0.38 -0.80 16 29 H 0.10 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.10 1.26 7.85 -52.48 -0.41 0.84 16 31 H 0.11 1.42 6.47 -52.49 -0.34 1.08 16 32 H 0.08 1.45 7.80 -51.92 -0.41 1.05 16 33 H 0.08 1.23 5.24 -51.93 -0.27 0.95 16 34 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.04 1.28 7.45 -51.93 -0.39 0.90 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.15 1.89 3.53 -52.49 -0.19 1.70 16 38 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 43 H 0.08 0.63 8.01 -51.92 -0.42 0.21 16 44 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 45 H 0.13 1.22 5.78 -52.49 -0.30 0.92 16 46 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -34.02 379.49 -8.20 -42.21 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.38 Total: 1.39 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.32 Total: -6.42 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.30 Total: -38.82 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.50 Total: -20.98 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.02 -8.20 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292232902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.134 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds