Wall clock time and date at job start Tue Mar 31 2020 16:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50691 * 120.00104 * 2 1 4 4 N 1.46497 * 109.47241 * 127.39817 * 3 2 1 5 5 C 1.46501 * 120.00119 * 280.61308 * 4 3 2 6 6 C 1.50701 * 109.47409 * 269.99845 * 5 4 3 7 7 H 1.08004 * 119.99799 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00003 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00232 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99913 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47145 * 59.99895 * 10 8 6 12 12 H 1.48495 * 109.47439 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47194 * 300.00138 * 10 8 6 14 14 C 1.34779 * 120.00401 * 100.61177 * 4 3 2 15 15 O 1.21579 * 120.00465 * 178.18734 * 14 4 3 16 16 C 1.47608 * 119.99374 * 358.18649 * 14 4 3 17 17 C 1.39734 * 120.08869 * 319.04045 * 16 14 4 18 18 C 1.37700 * 119.91044 * 179.97438 * 17 16 14 19 19 C 1.38993 * 120.08770 * 359.97438 * 18 17 16 20 20 O 1.35710 * 119.91441 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00446 * 185.31828 * 20 19 18 22 22 H 1.08994 * 110.90805 * 30.99809 * 21 20 19 23 23 C 1.55306 * 110.84873 * 154.58204 * 21 20 19 24 24 C 1.54944 * 100.94128 * 152.32226 * 23 21 20 25 25 O 1.43644 * 105.14015 * 323.55906 * 24 23 21 26 26 C 1.43235 * 109.96941 * 24.42020 * 25 24 23 27 27 C 1.38998 * 120.18069 * 0.27098 * 19 18 17 28 28 C 1.37714 * 120.08085 * 359.49110 * 27 19 18 29 29 H 1.08005 * 120.00547 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.00198 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.99514 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.47456 * 7.40082 * 3 2 1 33 33 H 1.09001 * 109.47746 * 247.40044 * 3 2 1 34 34 H 1.08998 * 109.47205 * 29.99945 * 5 4 3 35 35 H 1.09003 * 109.47311 * 149.99799 * 5 4 3 36 36 H 0.96997 * 119.99943 * 180.02562 * 9 8 6 37 37 H 1.08000 * 120.04551 * 359.95551 * 17 16 14 38 38 H 1.08004 * 119.95416 * 179.97438 * 18 17 16 39 39 H 1.09003 * 111.12808 * 34.40337 * 23 21 20 40 40 H 1.09003 * 111.12560 * 270.23871 * 23 21 20 41 41 H 1.08996 * 110.31343 * 204.63639 * 24 23 21 42 42 H 1.09007 * 110.39234 * 82.51467 * 24 23 21 43 43 H 1.09010 * 109.82864 * 117.80792 * 26 25 24 44 44 H 1.08998 * 109.83360 * 238.77857 * 26 25 24 45 45 H 1.07992 * 119.96233 * 179.72634 * 27 19 18 46 46 H 1.08002 * 120.03992 * 180.27647 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0341 1.3085 1.0973 5 6 2.5923 1.5911 2.4652 6 6 2.6743 3.0736 2.7234 7 1 3.0205 3.7388 1.9461 8 6 2.3065 3.5808 3.9515 9 7 1.8835 2.7710 4.8976 10 14 2.4074 5.4185 4.2713 11 1 1.5330 6.1370 3.3099 12 1 1.9597 5.7050 5.6579 13 1 3.8103 5.8743 4.1006 14 6 4.3336 1.0516 0.8484 15 8 5.1445 1.0869 1.7535 16 6 4.7721 0.7274 -0.5233 17 6 3.9955 -0.1109 -1.3273 18 6 4.4078 -0.4105 -2.6065 19 6 5.5946 0.1202 -3.0984 20 8 5.9973 -0.1769 -4.3598 21 6 7.2810 0.3054 -4.7616 22 1 7.9602 0.3591 -3.9108 23 6 7.8765 -0.5811 -5.8891 24 6 8.7809 0.4421 -6.6211 25 8 8.0617 1.6844 -6.5673 26 6 7.1593 1.6794 -5.4550 27 6 6.3726 0.9505 -2.3000 28 6 5.9646 1.2588 -1.0213 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3626 2.1293 0.1324 33 1 2.5872 1.4223 -0.9487 34 1 1.5625 1.2569 2.5908 35 1 3.2342 1.0634 3.1707 36 1 1.6244 3.1279 5.7614 37 1 3.0732 -0.5236 -0.9459 38 1 3.8083 -1.0588 -3.2285 39 1 7.0940 -0.9562 -6.5487 40 1 8.4650 -1.4001 -5.4755 41 1 8.9347 0.1385 -7.6566 42 1 9.7386 0.5370 -6.1092 43 1 7.4293 2.4714 -4.7562 44 1 6.1382 1.8271 -5.8064 45 1 7.2962 1.3574 -2.6842 46 1 6.5674 1.9076 -0.4031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292232902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:29 Heat of formation + Delta-G solvation = -71.759596 kcal Electronic energy + Delta-G solvation = -27958.534181 eV Core-core repulsion = 24007.132018 eV Total energy + Delta-G solvation = -3951.402163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81243 -40.99078 -39.66894 -37.92137 -37.38898 -35.14097 -33.72772 -32.89175 -32.18109 -31.35482 -29.92538 -29.27831 -27.04947 -25.59269 -24.50349 -23.82406 -23.23985 -22.19958 -21.42310 -20.20463 -19.54018 -18.65820 -18.33951 -17.83893 -17.44852 -17.30304 -16.62518 -16.34274 -16.14386 -16.06364 -15.78947 -15.36623 -15.17025 -14.97077 -14.59796 -14.46230 -14.32657 -14.13133 -13.98603 -13.55474 -13.40050 -13.25844 -13.17125 -12.93264 -12.87622 -12.58547 -12.56147 -12.34214 -12.22696 -12.02593 -11.80264 -11.69759 -11.61259 -10.77756 -10.64988 -10.61611 -10.37847 -10.06473 -9.57794 -9.26310 -8.23366 -6.38000 -0.04598 0.26841 1.30626 1.35638 1.39829 1.47213 1.80506 1.90952 2.29903 2.43850 2.72939 2.87166 3.06210 3.26306 3.60538 3.67154 3.72903 3.73774 3.89113 4.05819 4.06712 4.15483 4.20390 4.23664 4.27637 4.39253 4.53298 4.60805 4.67079 4.79530 4.83681 4.85436 4.92307 4.94517 5.00437 5.05084 5.12450 5.16758 5.23442 5.38579 5.47989 5.55744 5.69658 5.73892 5.88046 5.93350 6.04724 6.26672 6.64944 6.71934 7.23845 7.39450 8.83845 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.002641 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.094088 B =10600.743389 C =11512.113607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.194 4.194 3 C 0.127 3.873 4 N -0.590 5.590 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.051 0.949 8 C 0.009 3.991 9 N -0.926 5.926 10 Si 0.967 3.033 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.542 3.458 15 O -0.595 6.595 16 C -0.177 4.177 17 C -0.058 4.058 18 C -0.149 4.149 19 C 0.146 3.854 20 O -0.296 6.296 21 C 0.041 3.959 22 H 0.107 0.893 23 C -0.145 4.145 24 C 0.046 3.954 25 O -0.400 6.400 26 C 0.029 3.971 27 C -0.208 4.208 28 C -0.039 4.039 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.027 0.973 35 H -0.003 1.003 36 H 0.268 0.732 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.156 0.844 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -8.500 -25.530 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.213 4.213 3 C 0.005 3.995 4 N -0.318 5.318 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.204 1.204 14 C 0.331 3.669 15 O -0.477 6.477 16 C -0.180 4.180 17 C -0.076 4.076 18 C -0.167 4.167 19 C 0.100 3.900 20 O -0.209 6.209 21 C -0.016 4.016 22 H 0.125 0.875 23 C -0.183 4.183 24 C -0.029 4.029 25 O -0.320 6.320 26 C -0.047 4.047 27 C -0.226 4.226 28 C -0.058 4.058 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.077 0.923 37 H 0.176 0.824 38 H 0.181 0.819 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.173 0.827 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.382 -8.410 -25.168 27.544 hybrid contribution 0.138 0.988 1.306 1.643 sum 7.520 -7.422 -23.863 26.097 Atomic orbital electron populations 1.24091 0.95284 1.03186 0.96895 1.23293 0.96876 0.97888 1.03204 1.21020 0.91685 0.96700 0.90101 1.48132 1.07010 1.66804 1.09894 1.18722 0.93929 0.94982 0.77934 1.21642 1.44424 0.93313 0.98937 0.93094 1.25838 0.94453 1.03250 0.95430 1.70041 1.44684 1.36956 1.04910 0.85487 0.78537 0.79164 0.77747 1.18474 1.20144 1.20380 1.18939 0.82215 0.76730 0.88968 1.90711 1.53625 1.55077 1.48333 1.19822 0.98995 1.05477 0.93691 1.21840 0.98911 0.94211 0.92596 1.20571 0.96342 1.04041 0.95787 1.19304 0.93826 0.93082 0.83747 1.86105 1.35505 1.72611 1.26714 1.24290 0.83665 0.94450 0.99190 0.87549 1.23373 1.00041 0.98789 0.96060 1.23593 0.94927 0.81614 1.02810 1.88438 1.56317 1.38358 1.48869 1.23649 0.95077 0.97102 0.88921 1.21289 1.02819 1.03807 0.94691 1.20998 0.93337 0.96368 0.95104 0.86003 0.88184 0.86081 0.90724 0.87677 0.95461 0.98476 0.92331 0.82431 0.81935 0.88917 0.86935 0.87462 0.90277 0.90036 0.90561 0.82650 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.19 -5.26 8.34 25.64 0.21 -5.04 16 3 C 0.13 4.22 5.32 85.63 0.46 4.68 16 4 N -0.59 -26.42 2.46 -834.20 -2.05 -28.47 16 5 C 0.27 14.73 5.13 85.63 0.44 15.17 16 6 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 10 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 C 0.54 24.60 7.30 86.72 0.63 25.23 16 15 O -0.60 -33.08 16.53 -3.97 -0.07 -33.14 16 16 C -0.18 -5.95 5.07 -20.08 -0.10 -6.05 16 17 C -0.06 -1.48 7.45 22.50 0.17 -1.31 16 18 C -0.15 -3.07 9.97 22.32 0.22 -2.85 16 19 C 0.15 3.01 6.69 22.63 0.15 3.16 16 20 O -0.30 -5.20 9.86 -90.31 -0.89 -6.09 16 21 C 0.04 0.54 2.78 31.86 0.09 0.63 16 22 H 0.11 1.21 6.11 -2.39 -0.01 1.20 16 23 C -0.15 -1.33 6.89 32.05 0.22 -1.11 16 24 C 0.05 0.44 7.78 72.65 0.56 1.01 16 25 O -0.40 -6.76 11.36 -148.98 -1.69 -8.45 16 26 C 0.03 0.45 7.49 72.45 0.54 0.99 16 27 C -0.21 -4.56 8.95 22.33 0.20 -4.36 16 28 C -0.04 -1.16 9.64 22.51 0.22 -0.95 16 29 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.10 2.36 7.85 -2.91 -0.02 2.33 16 31 H 0.12 2.99 6.47 -2.91 -0.02 2.98 16 32 H 0.07 2.60 7.80 -2.38 -0.02 2.58 16 33 H 0.11 3.01 5.24 -2.39 -0.01 3.00 16 34 H 0.03 1.53 8.05 -2.39 -0.02 1.51 16 35 H 0.00 -0.18 7.45 -2.39 -0.02 -0.20 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.16 3.75 3.53 -2.91 -0.01 3.74 16 38 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.56 8.14 -2.38 -0.02 0.55 16 43 H 0.08 1.15 8.01 -2.38 -0.02 1.13 16 44 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 45 H 0.16 2.53 5.78 -2.91 -0.02 2.52 16 46 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -77.95 379.49 4.29 -73.66 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.99 Total: 15.73 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 5.69 Total: -4.45 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -1.77 Total: -84.84 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.65 Total: -47.69 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -77.95 4.29 -73.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292232902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.898 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds