Wall clock time and date at job start Tue Mar 31 2020 17:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.58946 * 2 1 4 4 C 1.53197 * 109.58766 * 120.28191 * 2 1 3 5 5 C 1.53037 * 109.31419 * 174.42342 * 4 2 1 6 6 H 1.08995 * 109.45127 * 58.64269 * 5 4 2 7 7 O 1.42897 * 109.45921 * 178.61678 * 5 4 2 8 8 C 1.53045 * 109.53784 * 298.63306 * 5 4 2 9 9 C 1.53195 * 109.31009 * 61.36626 * 8 5 4 10 10 N 1.46922 * 109.58867 * 239.56888 * 2 1 3 11 11 C 1.34780 * 120.62998 * 6.58736 * 10 2 1 12 12 O 1.21725 * 119.99902 * 5.81272 * 11 10 2 13 13 C 1.46248 * 120.00137 * 185.81865 * 11 10 2 14 14 C 1.35028 * 120.00041 * 185.12051 * 13 11 10 15 15 C 1.46959 * 119.99917 * 179.97438 * 14 13 11 16 16 C 1.40026 * 120.10083 * 359.72935 * 15 14 13 17 17 C 1.37600 * 119.89501 * 179.73841 * 16 15 14 18 18 C 1.39186 * 120.10256 * 0.51381 * 17 16 15 19 19 O 1.35569 * 119.89763 * 179.73799 * 18 17 16 20 20 C 1.34784 * 116.99727 * 174.78077 * 19 18 17 21 21 H 1.08003 * 120.00090 * 5.02312 * 20 19 18 22 22 C 1.38721 * 119.99701 * 185.02932 * 20 19 18 23 23 N 1.31508 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99564 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47070 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47002 * 119.99989 * 24 22 20 27 27 H 1.48496 * 109.47042 * 239.99893 * 24 22 20 28 28 C 1.39177 * 120.19884 * 359.76130 * 18 17 16 29 29 C 1.37593 * 120.10602 * 359.97438 * 28 18 17 30 30 H 1.09003 * 109.47074 * 294.21588 * 1 2 3 31 31 H 1.08998 * 109.46744 * 54.21090 * 1 2 3 32 32 H 1.08996 * 109.47304 * 174.21633 * 1 2 3 33 33 H 1.08999 * 109.49342 * 54.46900 * 4 2 1 34 34 H 1.09005 * 109.49541 * 294.37244 * 4 2 1 35 35 H 0.96703 * 113.99696 * 180.02562 * 7 5 4 36 36 H 1.08997 * 109.49939 * 181.31925 * 8 5 4 37 37 H 1.08999 * 109.49431 * 301.42016 * 8 5 4 38 38 H 1.08997 * 109.58414 * 65.15497 * 9 8 5 39 39 H 1.09002 * 109.58467 * 185.57965 * 9 8 5 40 40 H 1.08004 * 120.00277 * 5.12609 * 13 11 10 41 41 H 1.07993 * 119.99992 * 0.02562 * 14 13 11 42 42 H 1.07997 * 120.05149 * 359.97438 * 16 15 14 43 43 H 1.07996 * 119.95133 * 180.23471 * 17 16 15 44 44 H 0.97002 * 119.99527 * 180.02562 * 23 22 20 45 45 H 1.07998 * 119.94266 * 179.97438 * 28 18 17 46 46 H 1.07991 * 120.05445 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 1 4.0059 0.1488 1.0990 7 8 4.0529 -1.4964 2.3477 8 6 3.9569 -1.6658 -0.0613 9 6 3.4651 -0.9487 -1.3225 10 7 2.0226 -0.7011 -1.1935 11 6 1.1674 -1.1097 -2.1518 12 8 -0.0099 -0.8073 -2.0861 13 6 1.6538 -1.9165 -3.2704 14 6 0.8207 -2.2387 -4.2830 15 6 1.3096 -3.0489 -5.4073 16 6 2.6406 -3.4830 -5.4335 17 6 3.0926 -4.2460 -6.4857 18 6 2.2318 -4.5772 -7.5281 19 8 2.6829 -5.3247 -8.5653 20 6 1.7755 -5.7022 -9.4876 21 1 0.7594 -5.3417 -9.4247 22 6 2.1467 -6.5540 -10.5177 23 7 3.3841 -6.9927 -10.5946 24 14 0.8892 -7.0767 -11.7964 25 1 -0.4209 -6.4492 -11.4877 26 1 1.3418 -6.6422 -13.1423 27 1 0.7467 -8.5546 -11.7753 28 6 0.9097 -4.1430 -7.5091 29 6 0.4474 -3.3843 -6.4585 30 1 -0.3633 0.4215 0.9373 31 1 -0.3633 0.6010 -0.8336 32 1 -0.3634 -1.0224 -0.1036 33 1 1.6029 -1.7236 1.2935 34 1 1.7660 -0.1640 2.1371 35 1 5.0135 -1.6056 2.3687 36 1 5.0412 -1.7698 -0.1013 37 1 3.4982 -2.6528 -0.0018 38 1 3.9904 0.0001 -1.4316 39 1 3.6518 -1.5746 -2.1951 40 1 2.6794 -2.2546 -3.2866 41 1 -0.2048 -1.9003 -4.2670 42 1 3.3104 -3.2227 -4.6273 43 1 4.1179 -4.5845 -6.5049 44 1 3.6436 -7.5880 -11.3151 45 1 0.2455 -4.4021 -8.3204 46 1 -0.5785 -3.0475 -6.4448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293859259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:25 Heat of formation + Delta-G solvation = -59.724683 kcal Electronic energy + Delta-G solvation = -27269.341398 eV Core-core repulsion = 23318.461108 eV Total energy + Delta-G solvation = -3950.880290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64676 -39.21273 -38.29150 -36.94361 -35.97676 -33.83395 -32.74498 -32.12294 -31.67929 -30.45423 -28.37894 -27.49458 -25.72479 -24.57872 -23.73481 -22.29121 -22.06766 -21.19480 -19.95206 -18.75900 -18.00384 -17.61581 -17.23984 -16.99607 -16.25027 -15.43248 -15.13156 -14.97410 -14.86936 -14.65141 -14.27481 -14.11064 -13.85926 -13.72273 -13.44447 -13.30981 -13.04644 -12.77587 -12.57426 -12.41764 -12.12238 -11.95203 -11.91869 -11.83400 -11.77056 -11.64335 -11.30465 -11.15814 -11.07195 -10.81945 -10.64472 -10.54480 -10.24414 -9.60788 -9.51445 -9.08858 -8.90301 -8.72807 -8.40762 -7.13459 -6.67333 -4.22054 1.04853 2.11093 2.52757 2.87103 3.02046 3.03478 3.09200 3.50487 3.78254 3.80495 4.29921 4.35701 4.48779 4.61776 4.68658 4.83649 4.89650 4.91006 4.99902 5.05285 5.16106 5.18934 5.22036 5.38079 5.45898 5.48695 5.52927 5.59714 5.65133 5.68864 5.71697 5.84339 5.98938 6.07014 6.09903 6.18434 6.43830 6.48268 6.56023 6.61181 6.76948 6.89847 7.10763 7.21393 7.24293 7.25499 7.40741 7.61555 7.78209 8.30726 8.77660 9.44441 10.49343 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.001995 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.655561 B =14028.429691 C =14916.954436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.070 0.930 4 C -0.125 4.125 5 C 0.105 3.895 6 H 0.056 0.944 7 O -0.568 6.568 8 C -0.169 4.169 9 C 0.109 3.891 10 N -0.615 5.615 11 C 0.560 3.440 12 O -0.548 6.548 13 C -0.288 4.288 14 C 0.039 3.961 15 C -0.199 4.199 16 C -0.043 4.043 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.393 4.393 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.378 0.622 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 11.706 18.746 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.163 4.163 5 C 0.047 3.953 6 H 0.074 0.926 7 O -0.373 6.373 8 C -0.208 4.208 9 C -0.014 4.014 10 N -0.349 5.349 11 C 0.354 3.646 12 O -0.429 6.429 13 C -0.309 4.309 14 C 0.020 3.980 15 C -0.200 4.200 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.468 4.468 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.225 0.775 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.294 11.598 18.676 21.986 hybrid contribution 0.275 -0.345 -0.774 0.891 sum 0.569 11.252 17.902 21.152 Atomic orbital electron populations 1.22179 0.92048 1.04115 1.00958 1.21159 0.96304 0.94753 0.83214 0.91233 1.22003 0.93543 1.02550 0.98216 1.21780 0.95011 0.94471 0.84082 0.92624 1.86532 1.27156 1.82007 1.41643 1.22696 1.01723 1.01016 0.95375 1.21732 0.80491 1.00597 0.98582 1.48012 1.07116 1.58912 1.20834 1.18366 0.85261 0.78908 0.82078 1.90813 1.17119 1.57807 1.77157 1.22580 1.01488 1.09237 0.97575 1.22292 0.98157 0.87841 0.89740 1.18463 0.94920 1.08900 0.97719 1.20852 0.94237 0.94702 0.96331 1.20145 1.00098 1.06657 0.94956 1.19612 0.91926 0.89895 0.87529 1.83904 1.36941 1.57188 1.28280 1.21530 0.92479 1.28693 1.04116 0.88466 1.25404 0.97494 0.95546 0.98062 1.70022 1.16721 1.30079 1.31602 0.85579 0.79356 0.78840 0.79321 1.18847 1.19907 1.19897 1.21104 0.96724 1.06499 1.01800 1.20987 0.97938 0.94251 0.92110 0.93984 0.89982 0.91463 0.90661 0.90181 0.77507 0.90351 0.90347 0.91306 0.88471 0.85790 0.85951 0.86594 0.86143 0.91630 0.85107 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.61 37.16 0.28 -1.24 16 2 C 0.15 1.45 3.49 -67.60 -0.24 1.22 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -1.10 5.02 -26.61 -0.13 -1.24 16 5 C 0.11 0.79 3.43 -26.69 -0.09 0.70 16 6 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 7 O -0.57 -4.55 13.32 -35.23 -0.47 -5.01 16 8 C -0.17 -1.19 5.70 -26.61 -0.15 -1.34 16 9 C 0.11 0.87 6.35 -3.71 -0.02 0.85 16 10 N -0.61 -6.66 2.97 -166.90 -0.50 -7.15 16 11 C 0.56 7.72 7.42 -13.04 -0.10 7.62 16 12 O -0.55 -8.90 11.81 5.17 0.06 -8.84 16 13 C -0.29 -3.87 8.72 -37.51 -0.33 -4.20 16 14 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 15 C -0.20 -3.33 5.87 -105.02 -0.62 -3.95 16 16 C -0.04 -0.72 9.40 -39.14 -0.37 -1.09 16 17 C -0.20 -3.92 9.97 -39.46 -0.39 -4.31 16 18 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 19 O -0.16 -4.36 9.74 0.74 0.01 -4.36 16 20 C -0.39 -10.36 9.48 30.91 0.29 -10.06 16 21 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.85 -23.68 13.67 55.48 0.76 -22.92 16 24 Si 0.95 19.42 29.55 -169.99 -5.02 14.39 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.24 -4.96 9.14 -39.47 -0.36 -5.32 16 29 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 1.07 6.56 -51.93 -0.34 0.72 16 32 H 0.07 0.89 6.93 -51.93 -0.36 0.53 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.38 1.42 9.08 45.56 0.41 1.84 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.76 5.31 -51.93 -0.28 0.49 16 40 H 0.12 1.44 3.90 -52.48 -0.20 1.24 16 41 H 0.12 1.81 7.53 -52.49 -0.40 1.42 16 42 H 0.12 1.56 6.16 -52.49 -0.32 1.24 16 43 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.13 2.66 5.61 -52.49 -0.29 2.37 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -31.11 371.21 -8.30 -39.40 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.41 Total: 7.51 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -3.31 Total: -18.61 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.26 Total: -30.08 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.40 Total: -18.21 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.11 -8.30 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293859259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.321 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds