Wall clock time and date at job start Tue Mar 31 2020 17:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.58946 * 2 1 4 4 C 1.53197 * 109.58766 * 120.28191 * 2 1 3 5 5 C 1.53037 * 109.31419 * 174.42342 * 4 2 1 6 6 H 1.08995 * 109.45127 * 58.64269 * 5 4 2 7 7 O 1.42897 * 109.45921 * 178.61678 * 5 4 2 8 8 C 1.53045 * 109.53784 * 298.63306 * 5 4 2 9 9 C 1.53195 * 109.31009 * 61.36626 * 8 5 4 10 10 N 1.46922 * 109.58867 * 239.56888 * 2 1 3 11 11 C 1.34780 * 120.62998 * 6.58736 * 10 2 1 12 12 O 1.21725 * 119.99902 * 5.81272 * 11 10 2 13 13 C 1.46248 * 120.00137 * 185.81865 * 11 10 2 14 14 C 1.35028 * 120.00041 * 185.12051 * 13 11 10 15 15 C 1.46959 * 119.99917 * 179.97438 * 14 13 11 16 16 C 1.40026 * 120.10083 * 359.72935 * 15 14 13 17 17 C 1.37600 * 119.89501 * 179.73841 * 16 15 14 18 18 C 1.39186 * 120.10256 * 0.51381 * 17 16 15 19 19 O 1.35569 * 119.89763 * 179.73799 * 18 17 16 20 20 C 1.34784 * 116.99727 * 174.78077 * 19 18 17 21 21 H 1.08003 * 120.00090 * 5.02312 * 20 19 18 22 22 C 1.38721 * 119.99701 * 185.02932 * 20 19 18 23 23 N 1.31508 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99564 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47070 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47002 * 119.99989 * 24 22 20 27 27 H 1.48496 * 109.47042 * 239.99893 * 24 22 20 28 28 C 1.39177 * 120.19884 * 359.76130 * 18 17 16 29 29 C 1.37593 * 120.10602 * 359.97438 * 28 18 17 30 30 H 1.09003 * 109.47074 * 294.21588 * 1 2 3 31 31 H 1.08998 * 109.46744 * 54.21090 * 1 2 3 32 32 H 1.08996 * 109.47304 * 174.21633 * 1 2 3 33 33 H 1.08999 * 109.49342 * 54.46900 * 4 2 1 34 34 H 1.09005 * 109.49541 * 294.37244 * 4 2 1 35 35 H 0.96703 * 113.99696 * 180.02562 * 7 5 4 36 36 H 1.08997 * 109.49939 * 181.31925 * 8 5 4 37 37 H 1.08999 * 109.49431 * 301.42016 * 8 5 4 38 38 H 1.08997 * 109.58414 * 65.15497 * 9 8 5 39 39 H 1.09002 * 109.58467 * 185.57965 * 9 8 5 40 40 H 1.08004 * 120.00277 * 5.12609 * 13 11 10 41 41 H 1.07993 * 119.99992 * 0.02562 * 14 13 11 42 42 H 1.07997 * 120.05149 * 359.97438 * 16 15 14 43 43 H 1.07996 * 119.95133 * 180.23471 * 17 16 15 44 44 H 0.97002 * 119.99527 * 180.02562 * 23 22 20 45 45 H 1.07998 * 119.94266 * 179.97438 * 28 18 17 46 46 H 1.07991 * 120.05445 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 1 4.0059 0.1488 1.0990 7 8 4.0529 -1.4964 2.3477 8 6 3.9569 -1.6658 -0.0613 9 6 3.4651 -0.9487 -1.3225 10 7 2.0226 -0.7011 -1.1935 11 6 1.1674 -1.1097 -2.1518 12 8 -0.0099 -0.8073 -2.0861 13 6 1.6538 -1.9165 -3.2704 14 6 0.8207 -2.2387 -4.2830 15 6 1.3096 -3.0489 -5.4073 16 6 2.6406 -3.4830 -5.4335 17 6 3.0926 -4.2460 -6.4857 18 6 2.2318 -4.5772 -7.5281 19 8 2.6829 -5.3247 -8.5653 20 6 1.7755 -5.7022 -9.4876 21 1 0.7594 -5.3417 -9.4247 22 6 2.1467 -6.5540 -10.5177 23 7 3.3841 -6.9927 -10.5946 24 14 0.8892 -7.0767 -11.7964 25 1 -0.4209 -6.4492 -11.4877 26 1 1.3418 -6.6422 -13.1423 27 1 0.7467 -8.5546 -11.7753 28 6 0.9097 -4.1430 -7.5091 29 6 0.4474 -3.3843 -6.4585 30 1 -0.3633 0.4215 0.9373 31 1 -0.3633 0.6010 -0.8336 32 1 -0.3634 -1.0224 -0.1036 33 1 1.6029 -1.7236 1.2935 34 1 1.7660 -0.1640 2.1371 35 1 5.0135 -1.6056 2.3687 36 1 5.0412 -1.7698 -0.1013 37 1 3.4982 -2.6528 -0.0018 38 1 3.9904 0.0001 -1.4316 39 1 3.6518 -1.5746 -2.1951 40 1 2.6794 -2.2546 -3.2866 41 1 -0.2048 -1.9003 -4.2670 42 1 3.3104 -3.2227 -4.6273 43 1 4.1179 -4.5845 -6.5049 44 1 3.6436 -7.5880 -11.3151 45 1 0.2455 -4.4021 -8.3204 46 1 -0.5785 -3.0475 -6.4448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293859259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:24 Heat of formation + Delta-G solvation = -80.147772 kcal Electronic energy + Delta-G solvation = -27270.227010 eV Core-core repulsion = 23318.461108 eV Total energy + Delta-G solvation = -3951.765902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56978 -40.81885 -39.12851 -38.47430 -36.76429 -35.01005 -34.29816 -33.37980 -32.41947 -31.96915 -29.70753 -28.37630 -27.50675 -25.49044 -24.76484 -23.72045 -23.11861 -22.14649 -21.07994 -20.13112 -19.35407 -18.81820 -18.26593 -18.07350 -17.18056 -16.56178 -16.40421 -16.27620 -15.95978 -15.64603 -15.61508 -15.36268 -15.28480 -14.70605 -14.64633 -14.42042 -14.24693 -14.07171 -13.61006 -13.52777 -13.37531 -13.26670 -13.03286 -12.80635 -12.73684 -12.64916 -12.53207 -12.46332 -12.17538 -12.11008 -12.05046 -11.41082 -11.21242 -11.11179 -10.80518 -10.56090 -10.15071 -9.89685 -9.62496 -8.67680 -8.52797 -6.18668 -0.24543 0.58109 1.13470 1.35669 1.44793 1.53437 2.00526 2.14695 2.35354 2.85822 3.17153 3.22702 3.41617 3.53654 3.71190 3.83449 3.94685 3.98206 4.06916 4.10886 4.21544 4.26446 4.29142 4.42779 4.46433 4.48083 4.55231 4.64718 4.76269 4.83092 4.85788 4.93605 4.94533 4.99867 5.03846 5.15336 5.19375 5.22163 5.31952 5.34426 5.41153 5.57409 5.63542 5.71055 5.81283 5.97168 6.09957 6.44404 6.90872 6.91856 7.25135 7.68925 8.69451 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025456 B = 0.001995 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.655561 B =14028.429691 C =14916.954436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.148 3.852 3 H 0.091 0.909 4 C -0.122 4.122 5 C 0.107 3.893 6 H 0.075 0.925 7 O -0.587 6.587 8 C -0.163 4.163 9 C 0.101 3.899 10 N -0.609 5.609 11 C 0.548 3.452 12 O -0.577 6.577 13 C -0.251 4.251 14 C 0.016 3.984 15 C -0.170 4.170 16 C -0.037 4.037 17 C -0.205 4.205 18 C 0.130 3.870 19 O -0.219 6.219 20 C -0.416 4.416 21 H 0.105 0.895 22 C -0.019 4.019 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.249 4.249 29 C -0.040 4.040 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.396 0.604 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.150 0.850 41 H 0.124 0.876 42 H 0.159 0.841 43 H 0.124 0.876 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 14.001 21.684 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.045 3.955 3 H 0.109 0.891 4 C -0.160 4.160 5 C 0.048 3.952 6 H 0.093 0.907 7 O -0.395 6.395 8 C -0.202 4.202 9 C -0.021 4.021 10 N -0.341 5.341 11 C 0.342 3.658 12 O -0.460 6.460 13 C -0.272 4.272 14 C -0.003 4.003 15 C -0.171 4.171 16 C -0.055 4.055 17 C -0.225 4.225 18 C 0.078 3.922 19 O -0.124 6.124 20 C -0.491 4.491 21 H 0.123 0.877 22 C -0.218 4.218 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.175 1.175 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.268 4.268 29 C -0.059 4.059 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.246 0.754 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.167 0.833 41 H 0.142 0.858 42 H 0.176 0.824 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.534 13.941 21.693 25.792 hybrid contribution 0.178 -0.681 -1.048 1.263 sum 0.712 13.260 20.645 24.547 Atomic orbital electron populations 1.22037 0.93426 1.02143 1.01107 1.21260 0.95241 0.95855 0.83152 0.89132 1.21936 0.94952 1.01225 0.97897 1.21771 0.93818 0.95508 0.84117 0.90667 1.86489 1.29077 1.82152 1.41832 1.22653 1.03260 0.99655 0.94595 1.22033 0.78612 1.02147 0.99291 1.48129 1.08206 1.57644 1.20168 1.18511 0.85255 0.79233 0.82840 1.90831 1.18496 1.58740 1.77897 1.22915 1.02137 1.06085 0.96023 1.22168 0.98838 0.89374 0.89957 1.18784 0.94643 1.06452 0.97231 1.21254 0.94837 0.93198 0.96221 1.20419 1.00118 1.06942 0.94986 1.20190 0.93599 0.90423 0.88022 1.83885 1.37890 1.60429 1.30219 1.21929 0.93028 1.29414 1.04769 0.87739 1.26604 0.99611 0.95409 1.00141 1.70151 1.19098 1.32469 1.33294 0.84530 0.76998 0.78456 0.76270 1.17453 1.19273 1.19343 1.21198 0.95974 1.07005 1.02639 1.21306 0.99641 0.93553 0.91353 0.92079 0.91975 0.94025 0.92852 0.89434 0.75373 0.87595 0.92276 0.88904 0.87995 0.83292 0.85781 0.82398 0.85826 0.91589 0.85827 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 7.61 71.98 0.55 -2.17 16 2 C 0.15 2.44 3.49 44.98 0.16 2.60 16 3 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 4 C -0.12 -1.82 5.02 30.67 0.15 -1.66 16 5 C 0.11 1.18 3.43 30.62 0.11 1.29 16 6 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 7 O -0.59 -7.45 13.32 -148.98 -1.98 -9.43 16 8 C -0.16 -1.60 5.70 30.67 0.17 -1.43 16 9 C 0.10 1.13 6.35 86.36 0.55 1.68 16 10 N -0.61 -11.07 2.97 -800.17 -2.38 -13.45 16 11 C 0.55 13.53 7.42 86.32 0.64 14.17 16 12 O -0.58 -17.82 11.81 -4.43 -0.05 -17.87 16 13 C -0.25 -5.76 8.72 23.61 0.21 -5.55 16 14 C 0.02 0.44 9.45 23.82 0.23 0.66 16 15 C -0.17 -5.24 5.87 -20.12 -0.12 -5.36 16 16 C -0.04 -1.14 9.40 22.55 0.21 -0.93 16 17 C -0.21 -8.05 9.97 22.35 0.22 -7.83 16 18 C 0.13 6.13 6.66 22.72 0.15 6.28 16 19 O -0.22 -12.61 9.74 -20.28 -0.20 -12.80 16 20 C -0.42 -23.29 9.48 67.94 0.64 -22.64 16 21 H 0.11 5.37 5.18 -2.91 -0.02 5.36 16 22 C -0.02 -1.04 5.49 84.86 0.47 -0.57 16 23 N -0.91 -54.12 13.67 21.62 0.30 -53.82 16 24 Si 1.02 41.42 29.55 68.60 2.03 43.44 16 25 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 28 C -0.25 -10.39 9.14 22.34 0.20 -10.19 16 29 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.55 6.56 -2.39 -0.02 1.53 16 32 H 0.04 1.07 6.93 -2.39 -0.02 1.06 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.40 1.54 9.08 -74.06 -0.67 0.86 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 1.04 5.31 -2.39 -0.01 1.03 16 40 H 0.15 2.63 3.90 -2.91 -0.01 2.62 16 41 H 0.12 3.35 7.53 -2.91 -0.02 3.33 16 42 H 0.16 3.45 6.16 -2.91 -0.02 3.43 16 43 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 44 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.12 5.24 5.61 -2.91 -0.02 5.22 16 46 H 0.14 3.94 8.06 -2.92 -0.02 3.92 16 Total: -1.00 -73.87 371.21 2.82 -71.05 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.35 Total: 25.67 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 4.76 Total: -32.79 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -2.08 Total: -67.27 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -2.23 Total: -40.10 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -73.87 2.82 -71.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293859259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.100 kcal (2) G-P(sol) polarization free energy of solvation -73.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds