Wall clock time and date at job start Tue Mar 31 2020 17:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35959 * 116.99592 * 2 1 4 4 C 1.38076 * 120.00320 * 359.97438 * 3 2 1 5 5 C 1.39970 * 119.84182 * 179.97438 * 4 3 2 6 6 C 1.46959 * 120.08189 * 180.02562 * 5 4 3 7 7 C 1.35027 * 120.00471 * 180.02562 * 6 5 4 8 8 C 1.46251 * 120.00280 * 180.02562 * 7 6 5 9 9 O 1.21725 * 120.00274 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99947 * 180.02562 * 8 7 6 11 11 C 1.47579 * 134.49475 * 359.97438 * 10 8 7 12 12 C 1.53936 * 86.11832 * 204.64848 * 11 10 8 13 13 H 1.08999 * 113.84266 * 222.03548 * 12 11 10 14 14 C 1.53005 * 113.74215 * 90.74093 * 12 11 10 15 15 C 1.47581 * 134.49181 * 179.97438 * 10 8 7 16 16 H 1.09005 * 113.76867 * 41.05407 * 15 10 8 17 17 C 1.52999 * 113.77018 * 269.65617 * 15 10 8 18 18 C 1.40037 * 119.84138 * 0.27487 * 5 4 3 19 19 C 1.37643 * 119.99688 * 359.46398 * 18 5 4 20 20 C 1.39062 * 120.16373 * 0.51882 * 19 18 5 21 21 O 1.35611 * 119.92249 * 179.74108 * 20 19 18 22 22 C 1.34760 * 116.99970 * 354.37631 * 21 20 19 23 23 H 1.08000 * 120.00458 * 5.06669 * 22 21 20 24 24 C 1.38709 * 120.00096 * 185.06422 * 22 21 20 25 25 N 1.31524 * 119.99989 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00031 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.46905 * 89.99444 * 26 24 22 28 28 H 1.48493 * 109.46837 * 210.00047 * 26 24 22 29 29 H 1.48498 * 109.46797 * 329.99966 * 26 24 22 30 30 H 1.08998 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47285 * 300.00095 * 1 2 3 32 32 H 1.08994 * 109.47015 * 60.00453 * 1 2 3 33 33 H 1.08002 * 120.07895 * 359.95600 * 4 3 2 34 34 H 1.08003 * 119.99762 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.99766 * 359.97438 * 7 6 5 36 36 H 1.09002 * 113.76462 * 90.34114 * 11 10 8 37 37 H 1.09003 * 113.76908 * 318.95689 * 11 10 8 38 38 H 1.08998 * 109.47286 * 323.32321 * 14 12 11 39 39 H 1.09000 * 109.47405 * 203.32369 * 14 12 11 40 40 H 1.09004 * 109.47130 * 83.32257 * 14 12 11 41 41 H 1.08997 * 109.47113 * 323.50480 * 17 15 10 42 42 H 1.09000 * 109.47067 * 83.50469 * 17 15 10 43 43 H 1.09003 * 109.46656 * 203.50549 * 17 15 10 44 44 H 1.07994 * 119.99760 * 179.70294 * 18 5 4 45 45 H 1.07998 * 119.91948 * 180.23473 * 19 18 5 46 46 H 0.97003 * 119.99653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9330 3.6148 0.0000 6 6 1.1378 4.8507 0.0000 7 6 1.7557 6.0513 0.0000 8 6 0.9642 7.2811 0.0006 9 8 -0.2516 7.2225 0.0006 10 7 1.5811 8.4795 0.0001 11 6 2.9905 8.9173 -0.0006 12 6 2.4771 10.2196 0.6398 13 1 2.9394 11.1207 0.2369 14 6 2.4623 10.1897 2.1695 15 6 1.1184 9.8809 -0.0001 16 1 0.2666 10.0624 0.6554 17 6 0.9326 10.4688 -1.4003 18 6 3.3318 3.6804 -0.0047 19 6 4.0751 2.5219 0.0012 20 6 3.4405 1.2846 0.0011 21 8 4.1775 0.1463 0.0017 22 6 5.5131 0.2822 -0.1153 23 1 5.9573 1.2666 -0.1216 24 6 6.3176 -0.8422 -0.2275 25 7 7.6210 -0.7095 -0.3422 26 14 5.5494 -2.5450 -0.2172 27 1 5.2193 -2.9475 -1.6081 28 1 6.5089 -3.5173 0.3651 29 1 4.3093 -2.5236 0.5994 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2155 2.3144 -0.0017 34 1 0.0590 4.7986 -0.0008 35 1 2.8345 6.1033 0.0004 36 1 3.4078 9.0530 -0.9983 37 1 3.6335 8.3292 0.6544 38 1 2.1830 9.1929 2.5108 39 1 1.7395 10.9164 2.5402 40 1 3.4541 10.4384 2.5474 41 1 1.7076 10.0826 -2.0623 42 1 -0.0476 10.1873 -1.7854 43 1 1.0052 11.5552 -1.3507 44 1 3.8274 4.6400 -0.0092 45 1 5.1538 2.5740 0.0014 46 1 8.1836 -1.4959 -0.4203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293930473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:54 Heat of formation + Delta-G solvation = -22.719586 kcal Electronic energy + Delta-G solvation = -27282.486592 eV Core-core repulsion = 23333.210963 eV Total energy + Delta-G solvation = -3949.275629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70344 -39.87251 -38.10896 -37.86337 -36.63390 -33.07987 -32.43331 -31.46407 -30.62486 -29.84104 -28.81493 -27.08711 -26.58878 -25.49646 -24.32080 -22.95607 -21.85868 -21.02611 -19.53144 -18.28881 -18.08353 -17.94130 -17.08652 -16.48719 -16.15981 -15.77936 -15.39007 -15.36659 -14.66996 -14.40654 -14.05173 -13.97569 -13.86275 -13.80561 -13.56717 -13.45631 -13.26183 -12.71365 -12.61193 -12.47291 -12.32073 -12.02144 -11.94191 -11.92416 -11.70743 -11.58169 -11.41231 -11.10267 -10.99190 -10.89422 -10.74682 -10.64444 -10.30398 -9.71804 -9.59569 -9.46770 -8.92704 -8.75668 -8.09088 -7.05790 -6.58840 -4.18696 0.94249 1.99620 2.44142 2.73944 3.16542 3.21033 3.38468 3.51929 3.77860 3.93824 4.14853 4.35646 4.37886 4.56439 4.63836 4.78311 4.88413 4.95029 5.01255 5.03120 5.16647 5.19414 5.26879 5.34290 5.41971 5.42594 5.46691 5.50407 5.51715 5.62634 5.64330 5.66012 5.69932 5.82458 5.85325 5.90927 6.01829 6.06671 6.34927 6.40626 6.52375 6.78190 6.90586 7.15114 7.31200 7.49213 7.68716 7.78093 7.97770 8.28703 8.74915 9.36852 10.46952 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.002422 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.362584 B =11559.291051 C =12856.862427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.051 3.949 4 C -0.136 4.136 5 C -0.154 4.154 6 C 0.028 3.972 7 C -0.263 4.263 8 C 0.577 3.423 9 O -0.558 6.558 10 N -0.640 5.640 11 C 0.104 3.896 12 C -0.124 4.124 13 H 0.092 0.908 14 C -0.134 4.134 15 C 0.132 3.868 16 H 0.088 0.912 17 C -0.154 4.154 18 C -0.063 4.063 19 C -0.209 4.209 20 C 0.155 3.845 21 O -0.189 6.189 22 C -0.388 4.388 23 H 0.111 0.889 24 C 0.067 3.933 25 N -0.866 5.866 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.254 1.254 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.144 0.856 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 18.108 0.999 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.155 4.155 6 C 0.008 3.992 7 C -0.284 4.284 8 C 0.372 3.628 9 O -0.439 6.439 10 N -0.375 5.375 11 C -0.019 4.019 12 C -0.143 4.143 13 H 0.111 0.889 14 C -0.192 4.192 15 C 0.029 3.971 16 H 0.106 0.894 17 C -0.212 4.212 18 C -0.082 4.082 19 C -0.228 4.228 20 C 0.100 3.900 21 O -0.092 6.092 22 C -0.463 4.463 23 H 0.128 0.872 24 C -0.138 4.138 25 N -0.502 5.502 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.178 1.178 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.161 0.839 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.112 17.290 1.002 20.055 hybrid contribution -0.190 -0.534 -0.153 0.588 sum -10.303 16.755 0.848 19.688 Atomic orbital electron populations 1.22935 0.79886 1.03137 1.00676 1.86178 1.19870 1.26355 1.89886 1.18035 0.89262 0.84633 1.07406 1.20891 0.98720 0.90835 1.05120 1.18239 0.92833 0.91456 1.13008 1.22230 0.99168 0.90880 0.86945 1.22467 0.99896 0.91406 1.14622 1.18094 0.87076 0.82556 0.75099 1.90773 1.14159 1.86969 1.51999 1.49990 1.08670 1.04588 1.74270 1.23265 0.84615 0.93260 1.00737 1.23054 0.96251 0.98172 0.96798 0.88947 1.21565 1.02125 1.02593 0.92884 1.22698 0.97795 0.79879 0.96714 0.89435 1.21943 1.02868 1.00859 0.95565 1.20975 0.92424 0.97557 0.97223 1.20973 1.01233 0.90512 1.10133 1.18614 0.87699 0.87038 0.96626 1.83587 1.20429 1.27496 1.77679 1.20901 0.77168 0.97182 1.51016 0.87202 1.24519 0.94534 0.99741 0.95057 1.69626 1.03166 1.32046 1.45352 0.86166 0.79892 0.81370 0.79618 1.19627 1.20616 1.17758 0.88936 0.93264 0.93244 0.85656 0.85893 0.85842 0.89727 0.89734 0.92121 0.92081 0.91864 0.91923 0.91814 0.90955 0.86421 0.83869 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.39 16 2 O -0.31 -6.07 10.28 -34.23 -0.35 -6.42 16 3 C 0.05 1.04 6.70 -39.13 -0.26 0.78 16 4 C -0.14 -2.35 8.77 -38.99 -0.34 -2.70 16 5 C -0.15 -2.61 5.87 -105.04 -0.62 -3.22 16 6 C 0.03 0.42 9.45 -37.19 -0.35 0.07 16 7 C -0.26 -3.77 9.20 -37.51 -0.34 -4.12 16 8 C 0.58 8.71 7.97 -13.04 -0.10 8.61 16 9 O -0.56 -10.32 16.96 5.17 0.09 -10.23 16 10 N -0.64 -7.40 3.28 -172.53 -0.57 -7.97 16 11 C 0.10 0.83 7.61 -2.98 -0.02 0.81 16 12 C -0.12 -0.83 4.20 -89.69 -0.38 -1.20 16 13 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 14 C -0.13 -0.91 9.65 37.16 0.36 -0.55 16 15 C 0.13 1.20 4.59 -66.86 -0.31 0.89 16 16 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 17 C -0.15 -1.17 9.84 37.16 0.37 -0.80 16 18 C -0.06 -1.10 9.40 -39.12 -0.37 -1.47 16 19 C -0.21 -4.28 9.14 -39.49 -0.36 -4.65 16 20 C 0.16 3.54 6.67 -38.76 -0.26 3.28 16 21 O -0.19 -4.93 8.35 -13.94 -0.12 -5.04 16 22 C -0.39 -10.53 9.94 30.91 0.31 -10.22 16 23 H 0.11 2.98 5.42 -52.49 -0.28 2.70 16 24 C 0.07 1.82 5.49 -17.51 -0.10 1.72 16 25 N -0.87 -24.02 13.96 55.48 0.77 -23.25 16 26 Si 0.90 21.28 28.62 -169.99 -4.86 16.42 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 33 H 0.13 1.80 6.28 -52.49 -0.33 1.47 16 34 H 0.12 1.86 7.52 -52.48 -0.39 1.46 16 35 H 0.12 1.58 5.89 -52.48 -0.31 1.27 16 36 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16 37 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.06 0.53 7.99 -51.93 -0.41 0.11 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 1.72 6.15 -52.49 -0.32 1.40 16 45 H 0.14 3.00 5.62 -52.49 -0.29 2.70 16 46 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -32.17 385.83 -7.46 -39.63 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.45 Total: 2.42 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.79 Total: -11.38 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.21 Total: -31.21 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.38 Total: -21.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.42 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.17 -7.46 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293930473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.912 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds